کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
8646135 | 1569796 | 2018 | 11 صفحه PDF | دانلود رایگان |
عنوان انگلیسی مقاله ISI
Complete structure and variation of the chloroplast genome of Agropyron cristatum (L.) Gaertn
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کلمات کلیدی
LSCCTABSSCdN/dS ratioAgropyron cristatumCetyltrimethyl ammonium bromide - استیلتریال آمونیوم برومیدinverted repeat - تکرار معکوسDogma - دگمهChloroplast - سبزدیسه، کلروپلاستNon-synonymous - غیر مترادفPhylogeny - فیلوژنیSynonymous - مترادفEvolutionary rate - نرخ تکاملChloroplast genome - ژنوم کلروپلاست
موضوعات مرتبط
علوم زیستی و بیوفناوری
بیوشیمی، ژنتیک و زیست شناسی مولکولی
ژنتیک
پیش نمایش صفحه اول مقاله
چکیده انگلیسی
Agropyron cristatum (L.) Gaertner, a perennial grass in the tribe Triticeae (Poaceae), is a wild relative of cereal crops that is suitable for genetic improvement. In this study, we first sequenced the complete chloroplast (cp) genome of Ag. cristatum using Hiseq4000 PE150. The Ag. cristatum chloroplast genome is 135,554Â bp in length, has a typical quadripartite structure and contains 76 protein-coding genes, 29 tRNA genes and four rRNA genes. The cp genome of Ag. cristatum was used for comparison with other seven Triticeae species. One large variable region (800Â bp), which primarily contained the rpl23 (non-reciprocally translocated from IRs) and accD genes, was detected between rbcL gene and psaI gene within LSC region. The deletion of the accD and translocated rpl23 genes in Ag. cristatum indicated an independent gene-loss events or an additional divergence in Triticeae. Analyses of the dn/ds ratio and K2-P's genetic distance for 76 protein-coding genes showed that genes with evolutionary divergence might suffer from the effect of sequence regional constraints or gene functional constraints in Triticeae species. Our research will generally contribute to the knowledge of plastid genome evolution in Triticeae.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Gene - Volume 640, 15 January 2018, Pages 86-96
Journal: Gene - Volume 640, 15 January 2018, Pages 86-96
نویسندگان
Ning Chen, Li-Na Sha, Zhen-Zhen Dong, Chao Tang, Yi Wang, Hou-Yang Kang, Hai-Qin Zhang, Xue-Bin Yan, Yong-Hong Zhou, Xing Fan,