A soft collision detection algorithm for simple Brownian dynamics
Keywords: دینامیک براون; Brownian dynamics; Collision detection; Radial distribution functions
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Browndye: A software package for Brownian dynamics
Keywords: دینامیک براون; Brownian dynamics; Protein association; Software; Diffusion; Kinetics
A coarse-grained molecular model for actin–myosin simulation
Keywords: دینامیک براون; Actin; Myosin; Molecular motor; Brownian dynamics
Simulation of the heteroagglomeration between highly size-asymmetric ceramic particles
Keywords: دینامیک براون; Dilute colloidal suspensions; Heteroaggregation; Brownian dynamics; Global minimization; Simulation;
Do bending and torsional potentials affect the unraveling dynamics of flexible polymer chains in extensional or shear flows?
Keywords: دینامیک براون; Computational chemistry; Polymers; Simulation; Rheology; Rouse model; Brownian dynamics
Electrophoretical stretching of DNA in a hybrid microchannel
Keywords: دینامیک براون; DNA; Hybrid microchannel; Brownian dynamics;
Role of acetylcholine receptor domains in ion selectivity
Keywords: دینامیک براون; Molecular dynamics; Brownian dynamics; nAChR; Ion channel; Membrane protein; Selectivity
Using biased molecular dynamics and Brownian dynamics in the study of fluorescent proteins
Keywords: دینامیک براون; Green Fluorescent Protein; Molecular dynamics; Brownian dynamics; Potential of mean force; Nonradiative decay;
Comparison of steric effects in the modeling of spheres and rodlike particles in field-flow fractionation
Keywords: دینامیک براون; Separations; Complex fluids; Fluid mechanics; Hydrodynamics; Mathematical modelling; Simulation; Brownian dynamics; Field-flow fractionation; Nanotubes; Steric inversion; SWNTs
Mathematical modeling for colloidal dispersion undergoing Brownian motion
Keywords: دینامیک براون; Brownian dynamics; Colloidal dispersion; Particle suspension
Long-time self-diffusion for Brownian Gaussian-core particles
Keywords: دینامیک براون; 66.10.Cb; 61.20.Ja; 82.70.DdSelf-diffusion; Brownian dynamics; Simulations; Colloids
Brownian dynamics simulations of complexes of hyperbranched polymers with linear polyelectrolytes: Effects of the strength of electrostatic interactions on static properties
Keywords: دینامیک براون; Hyperbranched polymers; Interpolyelectrolyte complexes; Computer simulation; Brownian dynamics
From molecular shuttles to directed procession of nanorings
Keywords: دینامیک براون; Molecular motor; Brownian dynamics; Photoisomerization;
A computationally efficient approach for Hi fidelity fine graining from bead-spring models to bead-rod models
Keywords: دینامیک براون; Brownian dynamics; Coarse-graining; Bead-spring model; Bead-rod model; Successive fine graining
Brownian dynamics simulations of concentration coupled shear banding
Keywords: دینامیک براون; Particle-based simulation; Brownian dynamics; Core shell particles; Shear thinning; Shear banding
Efficacy of external tetraethylammonium block of the KcsA potassium channel: Molecular and Brownian dynamics studies
Keywords: دینامیک براون; Potassium ion channel; Tetraethylammonium; TEA; KcsA; Brownian dynamics; Conductance; Ion permeation
Computer simulation study on filtration of soot particles in diesel particulate filter
Keywords: دینامیک براون; Lattice Boltzmann method; Brownian dynamics; Diesel particulate filter; Porous media
Bacterial mechanosensitive channels: Experiment and theory
Keywords: دینامیک براون; MS channels; Patch clamp; Bilayer model; Mechanosensory transduction; EPR spectroscopy; FRET; molecular dynamics; Brownian dynamics
Effect of internal viscosity on Brownian dynamics of DNA molecules in shear flow
Keywords: دینامیک براون; Effect of internal viscosity; Dumbbell model; Brownian dynamics; DNA molecules in shear flow
Transient molecular electro-optics: Cartesian rotation vector versus Eulerian angles
Keywords: دینامیک براون; Molecular electro-optics; Cartesian rotation vector; Eulerian angles; Brownian dynamics; Theory
A note on the correspondence of an immersed boundary method incorporating thermal fluctuations with Stokesian–Brownian dynamics
Keywords: دینامیک براون; Stochastic processes; Fluid dynamics; Brownian dynamics; Statistical mechanics; Immersed Boundary Method
Brownian dynamics simulation of reversible polymer networks using a non-interacting bead-and-spring chain model
Keywords: دینامیک براون; Brownian dynamics; Bead-and-spring; Temporary network; Hydroxyethyl cellulose;
Brownian dynamics simulations of copolymer-stabilized nanoparticles in the presence of an oil–water interface
Keywords: دینامیک براون; Nanoparticles; Brownian dynamics; Oil–water interfaces
Influence of the potential range on the aggregation of colloidal particles
Keywords: دینامیک براون; Dilute colloidal suspension; Aggregation; Brownian dynamics; Simulation; Interaction potential; Fractal properties
Flap opening dynamics in HIV-1 protease explored with a coarse-grained model
Keywords: دینامیک براون; Coarse-grained models; HIV-1 protease; Molecular dynamics; Brownian dynamics; Langevin dynamics
Deposition efficiency of fractal-like aggregates in fibrous filters calculated using Brownian dynamics method
Keywords: دینامیک براون; Aerosol; Aggregate; Brownian dynamics; Cluster; Deposition; Fibrous filter; Filtration
Simulation of nanotube separation in field-flow fractionation (FFF)
Keywords: دینامیک براون; Brownian dynamics; Flow-field fractionation; Jeffrey equation; Nanotubes; Separations; SWNT
A stochastic immersed boundary method for fluid-structure dynamics at microscopic length scales
Keywords: دینامیک براون; Stochastic processes; Fluid dynamics; Brownian dynamics; Statistical mechanics; Immersed boundary method; Brownian ratchet; Polymer knot; Osmotic pressure
Dynamics of shear-thinning suspensions of core–shell structured latex particles
Keywords: دینامیک براون; Suspension rheology; Core–shell particle; Carboxylated latex; Critical shear stress; Inter-particle distance; Brownian dynamics
A new simulation model for electrochemical metal deposition
Keywords: دینامیک براون; Electrochemistry; Metal deposition; Molecular dynamics; Brownian dynamics;
Modeling adsorption and order formation by colloidal particles on a solid surface: A Brownian dynamics study
Keywords: دینامیک براون; Dispersion; Microstructure; Particle; Simulation; Brownian dynamics; Order formation
A model of fine particles deposition on smooth surfaces: I—Theoretical basis and model development
Keywords: دینامیک براون; Colloidal phenomena; Diffusion; Interface; Laminar flow; Stochastic processes; Brownian dynamics
A systematic investigation of the rate laws valid in intracellular environments
Keywords: دینامیک براون; Macromolecular crowding; Law of mass action; Fractal-like kinetics; Lattice-gas automata; Brownian dynamics; Lattice effects;
Efficient numerical integrators for stochastic models
Keywords: دینامیک براون; Trotter formula; Numerical simulations; Stochastic differential equations; Mesoscopic models; Dissipative particle dynamics; Brownian dynamics
Effects of pore structure and molecular size on diffusion in chromatographic adsorbents
Keywords: دینامیک براون; Brownian dynamics; Network model; Protein diffusion; Intraparticle diffusion; Hindered transport; Percolation
Brownian dynamics simulations of star-branched polymers in dilute solutions in extensional flow
Keywords: دینامیک براون; Brownian dynamics; Branched polymers; Extensional flow; Bead-spring model;
Estimation of the diffusion coefficient of aerosol particle aggregates using Brownian simulation in the continuum regime
Keywords: دینامیک براون; Aggregates; Diffusion coefficient; Aerosol dynamics; Brownian dynamics
Diffusion in three-dimensionally ordered scaffolds with inverted colloidal crystal geometry
Keywords: دینامیک براون; Three-dimensional cell scaffolds; Inverted colloidal crystals; Diffusion modeling; Brownian dynamics; Cell culture optimization
On estimating stress in free-draining Kramers chain simulations using stochastic filtering
Keywords: دینامیک براون; 61.25.Hq; 81.05.Lg; 83.10.Mj; 83.80.Rs; 02.50.Ey; 05.10.Gg; Brownian dynamics; Kramers chains; Constraints; Dilute polymers;
Off-lattice Dynamic Monte Carlo simulations of aggregation in one dimension
Keywords: دینامیک براون; Aggregation; First collision time; DLCA; Brownian dynamics; Dynamic Monte Carlo;
Space in systems biology of signaling pathways - towards intracellular molecular crowding in silico
Keywords: دینامیک براون; 3D; three-dimensional; BD; Brownian dynamics; CA; cellular automata; DPD; dissipative particle dynamics; FCS; fluorescence correlation spectroscopy; FRAP; fluorescence recovery after photobleaching; GFRD; Green's function reaction dynamics; HP; hydropho
Steady-state behavior of ring polymers in dilute flowing solutions via Brownian dynamics
Keywords: دینامیک براون; Brownian dynamics; Bead-and-spring; Dilute solution;
Steady-state behavior of star polymers in dilute flowing solutions via Brownian dynamics
Keywords: دینامیک براون; Brownian dynamics; Bead-and-spring; Dilute solution;
A model of sodium channels
Keywords: دینامیک براون; Sodium channel; Permeation; Ion channel; Brownian dynamics; Electrostatics; Blockage; Selectivity;
Brownian dynamics simulations of electrons and ions in mesoporous films
Keywords: دینامیک براون; Brownian dynamics; Mesoporous; Solar cells; Nanostructured; Ambipolar diffusion; Dye sensitized;