Keywords: شاخص سازگاری کدون; Mycoplasma; Nucleotide usage bias; Synonymous codon usage bias; Information entropy; Codon adaptation index; Evolutionary process;
مقالات ISI شاخص سازگاری کدون (ترجمه نشده)
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Keywords: شاخص سازگاری کدون; Codon adaptation index; Electric circuit model; Steady state; Relative codon usage;
Keywords: شاخص سازگاری کدون; Actinobacteria; Codon usage; Pathogenicity; Codon adaptation index; Effective number of codons; Highly expressed genes
Keywords: شاخص سازگاری کدون; L. major; Leishmania major; BLAST; Basic Local Alignment Search Tool; GRAVY; grand average of hydropathy index; Nc; effective number of codon; CAI; Codon Adaptation Index; FPKM; Fragments Per Kilobase of exon per Million fragments mapped; Orphan genes; Ev
Keywords: شاخص سازگاری کدون; VP; viral protein; AvRV; avian rotavirus; RVA; rotavirus species A; RVD; rotavirus species D; RVF; rotavirus species F; RVG; rotavirus species G; ORF; open reading frame; CAI; codon adaptation index; CoA; correspondence analysis; ENc; effective number of
Keywords: شاخص سازگاری کدون; DEGs; differentially expressed genes; CAI; Codon Adaptation Index; OGT; Optimal Growth Temperature; COG; Clusters Of Orthologous Groups of proteins; Gene regulation; Temperature adaptation; Sequence analysis; Transcriptome; Proteome;
An in silico study: Novel targets for potential drug and vaccine design against drug resistant H. pylori
Keywords: شاخص سازگاری کدون; H. pylori; Common proteins; Metabolic pathways; Network analysis; Druggability; Therapeutic targets; CAI; Codon adaptation index; CELLO; subCELlular LOcalization predictor; COGdb; Cluster of orthologous groups database; CP; chokepoint proteins; DEG; Datab
Evaluation of in vitro refolding vs cold shock expression: Production of a low yielding single chain variable fragment
Keywords: شاخص سازگاری کدون; Inclusion bodies; Single chain variable fragment; In vitro protein refolding; Cold shock; Disulfide bridge; Tissue factor; Fusion partner; Codon Adaptation Index; CAI; Dimethyl sulfoxide; DMSO; E.coli Codon Usage Analyzer; ECUA; Escherichia coli; E.coli;
Dissimilar substitution rates between two strands of DNA influence codon usage pattern in some human genes
Keywords: شاخص سازگاری کدون; CUB; codon usage bias; E. coli; Escherichia coli; S. typhimurium; Salmonella typhimurium; tAI; tRNA adaptation index; CDS; coding sequences; RSCU; relative synonymous codon usage; Nc; effective number of codon; CA; correspondence analysis; PR2; parity rul
A novel in silico minigene vaccine based on CD4+ T-helper and B-cell epitopes of EG95 isolates for vaccination against cystic echinococcosis
Keywords: شاخص سازگاری کدون; HC; hydatid cyst; PSC; protoscolex; CE; cystic echinococcosis; MPMV; multi-potent minigene vaccine; VCA; vaccine candidate antigen; EBV; epitope-based vaccine; BE; B-cell epitope; TE; T-cell epitope; MHC; major histocompatibility; Ag; antigen; Ab; antibod
Analysis of synonymous codon usage in Zika virus
Keywords: شاخص سازگاری کدون; Zika virus; Zoonotic; Guillain-Barre syndrome; Microcephaly; Relative synonymous codon usage; Codon adaptation index;
Synthesis, cloning and expression of a novel pre-miniproinsulin analogue gene in Escherichia coli
Keywords: شاخص سازگاری کدون; Pre-miniproinsulin; Proinsulin; Insulin analogues; Synthetic DNA; Codon adaptation index
The evolutionary landscape of the Mycobacterium tuberculosis genome
Keywords: شاخص سازگاری کدون; MTB; Mycobacterium tuberculosis; MTBC; Mycobacterium tuberculosis complex; dN; Nonsynonysmous substitution rate; dS; Synonymous substation rate; di; Nucleotide substitution rate at intergenic regions; indel; Insertion and deletion; kb; kilobase; SNP; Sing
Genome-wide characterization of the relationship between essential and TATA-containing genes
Keywords: شاخص سازگاری کدون; NENT; non-essential non-TATA; NET; non-essential TATA; ENT; essential non-TATA; ET; essential TATA; CAI; codon adaptation index; Fop; frequency of optimal codon; EL; mRNA expression level; Degree; degree in protein interaction network; TFBS; the number of
Systematic characterization of hypothetical proteins in Synechocystis sp. PCC 6803 reveals proteins functionally relevant to stress responses
Keywords: شاخص سازگاری کدون; CAI; codon adaptation index; CH; chaperone/degradation proteins; CMR; Comprehensive Microbial Resource; DTT; dithiothreitol; EDTA; Ethylenediaminetetraacetic acid; iTRAQ; isobaric tag for relative and absolute quantification; HP; hypothetical proteins; LC
ArtPathDesign: Rational heterologous pathway design system for the production of nonnative metabolites
Keywords: شاخص سازگاری کدون; ArtPathDesign; Codon adaptation index; Heterologous enzymes; In silico platform; Metabolic pathway
Gene expression profile of the cynobacterium synechocystis genome
Keywords: شاخص سازگاری کدون; CAI; Codon adaptation index; ORF; Open reading frame; PHE; Predicted highly expressed; PS; Photosystem; RCA; Relative codon adaptation; RCBS; The score of relative codon usage bias; RP; Ribosomal protein; SAGE; Serial analysis of gene expression; TF; Tran
Eukaryotic extracellular catalase-peroxidase from Magnaporthe grisea - Biophysical/chemical characterization of the first representative from a novel phytopathogenic KatG group
Keywords: شاخص سازگاری کدون; Extracellular catalase-peroxidase; Peroxidases-catalase superfamily; Phytopathogen; Oxidative stress; Resonance Raman spectroscopy; Reduction potential; 5c; five-coordinated; 6c; six-coordinated; APx; ascorbate peroxidase; ARP; Arthromyces ramosus per
Phylogenetic relationships of the Cobitoidea (Teleostei: Cypriniformes) inferred from mitochondrial and nuclear genes with analyses of gene evolution
Keywords: شاخص سازگاری کدون; COI; cytochrome c oxidase subunit I; ND4; NADH dehydrogenase subunit 4; ND5; NADH dehydrogenase subunit 5; Cyt b; cytochrome b; RAG1; recombination activating gene 1; RH1; rhodopsin; EGR2B; early growth response protein 2B; IRBP; interphotoreceptor retino
A novel approach for predicting the evolutionary time of acquisition of foreign genes by bacteria: Application of codon usage analyses
Keywords: شاخص سازگاری کدون; Codon adaptation index; Synonymous substitution rate; Evolutionary time; Horizontal gene transfer
How does gene expression level contribute to thermophilic adaptation of prokaryotes? An exploration based on predictors
Keywords: شاخص سازگاری کدون; PHX; predicted highly expressed; OGT; optimal growth temperature; CIT; Comprehensive Indicator of Thermostability for proteins; CAI; Codon Adaptation Index; COG; Cluster of Orthologous Groups of proteins; Gene expression level; Thermophilic adaptation; Pr
A theoretical analysis of codon adaptation index of the Boophilus microplus bm86 gene directed to the optimization of a DNA vaccine
Keywords: شاخص سازگاری کدون; Codon adaptation index; DNA vaccination; Boophilus microplus; Bovine
Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation
Keywords: شاخص سازگاری کدون; CAI; Codon Adaptation Index; ENC; Effective Number of Codons; GY; Goldman and Yang; NG; Nei and Gojobori; MG; Muse and Gaut.; Codon model; Synonymous rate; Natural selection; Drosophila; Rodents; Bacteria;
Over-representation of Chi sequences caused by di-codon increase in Escherichia coli K-12
Keywords: شاخص سازگاری کدون; ChiEC; Chi sequence in E. coli; ChiBS; Chi sequences in B. subtilis; ChiHI; Chi sequences in H. influenzae; CAI; codon adaptation index; GC3; GC contents at third codon position; Chi sequence; RecBCD; Homologous recombination; Codon usage; Comparative gen
Compositional variation in bacterial genes and proteins with potential expression level
Keywords: شاخص سازگاری کدون; Codon adaptation index; Synonymous codon usage; Amino acid usage; Average size/complexity score; Alcoholicity
Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB)
Keywords: شاخص سازگاری کدون; 3D; three dimensional; CAI; codon adaptation index; CDS; coding sequences; CHGC; Chinese National Human Genome Center; DDBJ; DNA Data Bank of Japan; DKFZ; Deutsches Krebsforschungszentrum Heidelberg; EMBL; The European Molecular Biology Laboratory; EST; e