The mtDNA replication-related genes TFAM and POLG are associated with leprosy in Han Chinese from Southwest China
Keywords: Leprosy; TFAM; POLG; eQTL; Genetic association study;
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Association of Ribonuclease T2 Gene Polymorphisms With Decreased Expression and Clinical Characteristics of Severity in Crohn's Disease
Keywords: SNP; Prognosis; Genetics; Risk Factor; CD; Crohn's disease; eQTL; expression quantitative trait loci; GWAS; genome-wide association study; IBD; inflammatory bowel diseases; ICAM1; intercellular adhesion molecule 1; IFNG; interferon gamma; IIBDGC; Intern
A cis-eQTL in AHI1 confers risk to schizophrenia in European populations
Keywords: AHI1; rs11154801; Schizophrenia; eQTL;
One SNP at a Time: Moving beyond GWAS in Psoriasis
Keywords: ChIP; chromatin immunoprecipitation; eQTL; expression quantitative trait locus; GPP; generalized pustular psoriasis; GWAS; genome-wide association study; LCE; late cornified envelope; LD; linkage dysequilibrium; MHC; major histocompatibility complex; SNP;
Gene signatures of postoperative atrial fibrillation in atrial tissue after coronary artery bypass grafting surgery in patients receiving β-blockers
Keywords: AF; atrial fibrillation; BB; β-blocker; CABG; coronary artery bypass grafting; CPB; cardiopulmonary bypass; EGFR; epidermal growth factor receptor; eQTL; expression quantitative trait loci; ES; enrichment score; FAM126B; family with sequence similarity 1
Fine mapping of the GWAS loci identifies SLC35D1 and IL23R as potential risk genes for leprosy
Keywords: Leprosy; SLC35D1; IL23R; GWAS; Susceptibility; eQTL;
A 3′UTR polymorphism marks differential KLRG1 mRNA levels through disruption of a miR-584-5p binding site and associates with pemphigus foliaceus susceptibility
Keywords: KLRG1; rs1805672; Gene expression; eQTL; 3′UTR; miR-584-5p
Transcriptomics in type 2 diabetes: Bridging the gap between genotype and phenotype
Keywords: Type 2 diabetes; Insulin resistance; Obesity; Gene expression; Mexican Americans; VAGES; ADH1B; Transcriptomics; GWAS; eQTL
Original ResearchFull Report: Basic and Translational-Alimentary TractVariants in TRIM22 That Affect NOD2 Signaling Are Associated With Very-Early-Onset Inflammatory Bowel Disease
Keywords: VEOIBD; NF-kB; Antiviral and Antibacterial Networks; eQTL; expression quantitative trait loci; GWAS; genome-wide association study; MDP; muramyl dipeptide; NF-κB; nuclear factorâκB; NOD2; nucleotide binding oligomerization domain containing 2; RSV; to
Functional variants of 17q12-21 are associated with allergic asthma but not allergic rhinitis
Keywords: ORMDL3; 17q21; allergic asthma; allergic rhinitis; Singapore Chinese; IgE; eosinophil counts; AR; Allergic rhinitis; eQTL; Expression quantitative trait loci; GSDMB; Gasdermin B; HDM; House dust mite; IKZF3; IKAROS family zinc finger 3 (Aiolos); OR; Odds
ImmVar project: Insights and design considerations for future studies of “healthy” immune variation
Keywords: Genetic variation; eQTL; Healty immune variation; Genetic architecture;
Common variants of IRF3 conferring risk of schizophrenia
Keywords: Schizophrenia; Association; eQTL; IRF3; Expression;
CTNNA3 and SEMA3D: Promising loci for asthma exacerbation identified through multiple genome-wide association studies
Keywords: Asthma; exacerbation; genome-wide association study; expression quantitative trait locus; CTNNA3; SEMA3D; biobank; childhood asthma; ABRIDGE; Asthma BioRepository for Integrative Genomic Exploration; ASM; Airway smooth muscle; BioVU; Biobank of Vanderbilt
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs
Keywords: Translational bioinformatics; Centrality; Complex diseases; eQTL; Single Nucleotide Polymorphism (SNP); Master integrator; Computational genomics; Genomics; Transcriptome; mRNA; Network biology; Big data; Computational biology; Computational medicine; Com
Genome-wide association study and admixture mapping reveal new loci associated with total IgE levels in Latinos
Keywords: IgE; genome-wide association study; admixture mapping; allergy; asthma; next-generation sequencing; Latinos; Hispanics; minority populations; eQTL; Expression quantitative trait locus; GALA I; Genetics of Asthma in Latino Americans; GALA II; Genes-environ
PTPN21 exerts pro-neuronal survival and neuritic elongation via ErbB4/NRG3 signaling
Keywords: NRG3; Neuregulin 3; eQTL; expression quantitative trait locus; SNPs; single nucleotide polymorphisms; PTPN21; protein tyrosine phosphatase non-receptor 21; GWAS; genome-wide association study; RTK; receptor tyrosine kinase; FAK; focal adhesion kinase; KIF
Original ResearchFull Report: Basic and Translational-Alimentary TractPolymorphisms Near TBX5 and GDF7 Are Associated With Increased Risk for Barrett's Esophagus
Keywords: EAC; Intestinal Metaplasia; Susceptibility; Cancer; ASE; allele-specific expression; BE; Barrett's esophagus; BEACON; Barrett's and Esophageal Adenocarcinoma Consortium; CI; confidence interval; EAC; esophageal adenocarcinoma; eQTL; expression quantitat
ReviewM1 and M2 immune activation in Parkinson's Disease: Foe and ally?
Keywords: AD; Alzheimer Disease; CD; cluster of differentiation; EAE; experimental autoimmune encephalitis; eQTL; expression of quantitative trait loci; GM-CSF; granulocyte-modifying colony-stimulating factor; GWAS; genome-wide association studies; HLA-DR; human le
A functional brain-derived neurotrophic factor (BDNF) gene variant increases the risk of moderate-to-severe allergic rhinitis
Keywords: Brain-derived neurotrophic factor; moderate-to-severe allergic rhinitis; Singapore Chinese; neurotrophins; genetic association; AR; Allergic rhinitis; BDNF; Brain-derived neurotrophic factor; CHB; HapMap Han Chinese from Beijing; eQTL; Expression quantit
Genome-Wide Significant Loci: How Important Are They?: Systems Genetics to Understand Heritability of Coronary Artery Disease and Other Common Complex Disorders
Keywords: atherosclerosis; atherosclerotic plaque; genome-wide association study; myocardial infarction; primary prevention; regulatory gene networks; CAD; coronary artery disease; eQTL; expression quantitative trait locus; GGES; genetics of gene expression studies
Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels
Keywords: Genetics; occupational exposures; interactions; gene expression; lung function; COPD; Chronic obstructive pulmonary disease; DC; Dendritic cell; eQTL; Expression quantitative trait locus; GWAS; Genome-wide association study; GWIS; Genome-wide interaction
Association analysis of putative cis-acting polymorphisms of interleukin-19 gene with schizophrenia
Keywords: eQTL; expression quantitative trait loci; GWAS; genome-wide association study; HWE; Hardy-Weinberg equilibrium; LD; linkage disequilibrium; IL-19; interleukin-19; SNP; single nucleotide polymorphism; eQTL; Haplotype; IL-19; Schizophrenia; SNP;
From genome to function by studying eQTLs
Keywords: eQTL; Gene expression; Genetics; Micro-array; RNA-seq
Association of IL33-IL-1 receptor-like 1 (IL1RL1) pathway polymorphisms with wheezing phenotypes and asthma in childhood
Keywords: IL33-IL1RL1 pathway; asthma; wheezing phenotypes; children; IL1RL1; IL33; Avon Longitudinal Study of Parents and Children study; Prevalence and Incidence of Asthma and Mite Allergy study; ALSPAC; Avon Longitudinal Study of Parents and Children; eQTL; Expr
Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics
Keywords: Asthma; bronchodilator response; lung function; inhaled corticosteroids; single nucleotide polymorphisms; zinc finger proteins; ZNF432; AC9; Adenylate cyclase 9; ADRB2; β2-adrenergic receptor; BDR; Bronchodilator response; CAMP; Childhood Asthma Manageme
Asthma and lower airway diseaseFraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants
Keywords: Airway inflammation; asthma phenotypes; biomarker; genetics; genome-wide association study; eQTL; Expression quantitative trait locus; Feno; Fraction of exhaled nitric oxide; GCTA; Genome-wide complex trait analysis; GSDMB; Gasdermin B; GWA; Genome-wide a
A genome-wide survey of CD4+ lymphocyte regulatory genetic variants identifies novel asthma genes
Keywords: Asthma; CD4+ lymphocytes; regulatory variants; expression quantitative trait locus; haplotype; integrative genomics; Asthma BRIDGE; Asthma Biorepository for Integrative Genomic Exploration; CAMP; Childhood Asthma Management Program; ChIP; Chromatin immuno
An eQTL analysis of the human glioblastoma multiforme genome
Keywords: Glioblastoma multiforme; eQTL; Gene expression
Genomics to systems biology in animal and veterinary sciences: Progress, lessons and opportunities
Keywords: sgBLUP; Genomic prediction; Systems genetics; Systems biology; eQTL; RNAseq;
Original ResearchFull Report: Basic and Translational-Alimentary TractExpression Quantitative Trait Loci Analysis Identifies Associations Between Genotype and Gene Expression in Human Intestine
Keywords: SNPdb; IBD; Transcriptomics; Systems Biology; eQTL; expression quantitative trait loci; eSNP; expressed single nucleotide polymorphism; FDR; false discovery rate; GC; GenCall; GWAS; genome-wide association studies; IBD; inflammatory bowel disease; kb; kil
Genetics of chronic rhinosinusitis: State of the field and directions forward
Keywords: Genetics; genome; variation; chronic rhinosinusitis; nasal polyposis; single nucleotide polymorphism; polymorphism; candidate gene; linkage; genome wide association study; susceptibility; sinusitis; AERD; Aspirin-exacerbated respiratory disease; AF; Allel
Molecular advances in QTL discovery and application in pig breeding
Keywords: pig; quantitative trait loci; eQTL; allele-specific expression; genome-wide association; candidate gene
NKAIN1–SERINC2 is a functional, replicable and genome-wide significant risk gene region specific for alcohol dependence in subjects of European descent
Keywords: Genome-wide association studies; Alcohol dependence; eQTL; Risk region; Replication
SNPs affecting serum metabolomic traits may regulate gene transcription and lipid accumulation in the liver
Keywords: SNP; single nucleotide polymorphism; GWAS; genome-wide association studies; HLC; hepatic lipid content; eQTL; expression quantitative trait loci; LD; linkage disequilibrium; FADS1; fatty acid desaturase 1; ELOVL2; ELOVL fatty acid elongase 2; ACADS; acyl-
ReviewThe age of the “ome”: Genome, transcriptome and proteome data set collection and analysis
Keywords: Human brain; Gene; Genetics; Genome; eQTL; Expression quantitative trait locus; Transcriptome; Transcript; Proteome; Next generation sequencing (NGS);
Integration of GWAS SNPs and tissue specific expression profiling reveal discrete eQTLs for human traits in blood and brain
Keywords: eQTL; GWAS; Brain; Blood;
Genetic Loci Implicated in Erythroid Differentiation and Cell Cycle Regulation Are Associated With Red Blood Cell Traits
Keywords: eMERGE; electronic MEdical Records and GEnomics; EMMAX; mixed-model association-expedited; EMR; electronic medical record; eQTL; expression quantitative trait locus; GHC; Group Health Cooperative--University of Washington; GWAS; genomewide association stu
Polymorphism and expression of the porcine Tenascin C gene associated with meat and carcass quality
Keywords: TNC gene; Single nucleotide polymorphism; mRNA expression; Association; eQTL; Meat and carcass quality
Linking Variants From Genome-Wide Association Analysis to Function via Transcriptional Network Analysis
Keywords: Genome-wide association study; gene regulation; eQTL; transcriptional network;
Single nucleotide polymorphisms affect both cis- and trans-eQTLs
Keywords: Microarray; SNP; eQTL; cis-eQTL; trans-eQTL; Mouse; Human
Detection and interpretation of expression quantitative trait loci (eQTL)
Keywords: Expression quantitative trait locus; Expression QTL; eQTL; Transcriptional regulation; Genetic association study; Linkage analysis; Random forest