Keywords: شبکه های متابولیک; Metabolic networks; Constraint-based models; Genome-scale models; Multi-scale models; Dynamic flux balance analysis;
مقالات ISI شبکه های متابولیک (ترجمه نشده)
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Keywords: شبکه های متابولیک; Metabolic networks; RNA-seq data; Genome-wide models; Sample stratification; Cancer metabolism;
Keywords: شبکه های متابولیک; Biological Networks; Protein-Protein Interaction Networks (PPIn); Gene Regulatory Networks (GRN); Metabolic Networks; Signaling Networks; Neuronal Networks; Food Webs; Phylogenetic Trees; Special Networks and Hierarchies; Health Care Model;
Keywords: شبکه های متابولیک; Metagenomics; Metabolic networks; Dynamic flux balance analysis (DFBA); Biogeochemical cycles; Metagenomic modelling;
Keywords: شبکه های متابولیک; Network analysis; Habitat variability; Modularity; Metabolic networks; Evolution
Keywords: شبکه های متابولیک; Flux balance analysis; Metabolic networks; Transcriptional regulatory networks; Data integration; Integrated regulatory-metabolic models;
Keywords: شبکه های متابولیک; Gene regulatory networks; Metabolic networks; Information; Uncertainty; Entropy and mutual information
Keywords: شبکه های متابولیک; Metabolic control analysis; Allosteric regulation; Metabolic networks; Kinetic models; Kinetic modeling; Prediction performance; Systems metabolic engineering;
Keywords: شبکه های متابولیک; Polycyclic aromatic hydrocarbons (PAHs); Microbial community; Fluoranthene biodegradation; Metabolic networks; PICRUSt;
Keywords: شبکه های متابولیک; Metabolic flux analysis; Gene expression; Metabolic networks; Cancer;
Keywords: شبکه های متابولیک; Cancer; Metabolic networks; Topological analysis; Flux balance analysis; Warburg effect; Genome-scale modeling; Cancer treatment;
Keywords: شبکه های متابولیک; Seed development; Seed size; Nutrition; Genomics; Metabolic networks; Systems biology;
Integrated physiology and proteome analysis of embryo and endosperm highlights complex metabolic networks involved in seed germination in wheat (Triticum aestivum L.)
Keywords: شبکه های متابولیک; Bread wheat; Embryo; Endosperm; Proteome; Metabolic networks; Seed germination;
Tapping into Salmonella typhimurium LT2 genome in a quest to explore its therapeutic arsenal: A metabolic network modeling approach
Keywords: شبکه های متابولیک; S. typhimurium; Metabolic networks; FBA; MOMA; Drug target; Constraint based modeling;
Computational modelling of genome-scale metabolic networks and its application to CHO cell cultures
Keywords: شبکه های متابولیک; Metabolic networks; Genome-scale metabolic models; Chinese hamster ovary cells; Flux balance analysis; Modelling and analysis;
Virocell Metabolism: Metabolic Innovations During Host-Virus Interactions in the Ocean
Keywords: شبکه های متابولیک; host-virus coevolution; metabolic networks; auxiliary metabolic genes; marine viruses; virocell phytoplankton; large dsDNA viruses; cyanophages;
Solving the maximum edge biclique packing problem on unbalanced bipartite graphs
Keywords: شبکه های متابولیک; Maximum edge biclique packing; Branch-and-price; Metabolic networks; Product bundling
Dynamic metabolic models of CHO cell cultures through minimal sets of elementary flux modes
Keywords: شبکه های متابولیک; Elementary flux modes; Dynamical modeling; Metabolic networks; Underdetermined systems; Mammalian cells;
Finding minimal generating set for metabolic network with reversible pathways
Keywords: شبکه های متابولیک; Metabolic networks; Elementary flux modes; Minimal generating set; Metabolic pathways
An algorithm for rapid computational construction of metabolic networks: A cholesterol biosynthesis example
Keywords: شبکه های متابولیک; Systems biology; Binary coding; Modelling; Simulation; Metabolic networks
Optimizing metabolic pathways by screening for feasible synthetic reactions
Keywords: شبکه های متابولیک; Metabolic networks; Optimization; Mass-balanced reactions; Synthetic biology;
Exploring the gap between dynamic and constraint-based models of metabolism
Keywords: شبکه های متابولیک; Systems biology; Metabolic networks; Dynamic models; Constraint-based models
Structural distance and evolutionary relationship of networks
Keywords: شبکه های متابولیک; Metabolic networks; Graph spectra; Graph Laplacian; Normalized graph Laplacian; Structural difference of networks; Graph evolution; Evolutionary relationship of networks
Restricted cooperative games on metabolic networks reveal functionally important reactions
Keywords: شبکه های متابولیک; Cooperative game theory; Flux balance analysis; Shapley value; Metabolic networks; Functional importance of reactions
On generalisations of the log-Normal distribution by means of a new product definition in the Kapteyn process
Keywords: شبکه های متابولیک; Generalised log-Normal; Kapteyn multiplicative process; Metabolic networks; q-product; Volatility;
Multistability and oscillations in genetic control of metabolism
Keywords: شبکه های متابولیک; Genetic networks; Metabolic networks; Piecewise linear systems; Transcriptional control;
Tools-4-Metatool (T4M): Online suite of web-tools to process stoichiometric network analysis data from Metatool
Keywords: شبکه های متابولیک; Metabolic networks; Stoichiometric analysis
An application programming interface for CellNetAnalyzer
Keywords: شبکه های متابولیک; Constraint-based modeling; Elementary modes; Metabolic networks; Network analysis; Systems biology; Signaling networks
Visualizing multi-omics data in metabolic networks with the software Omix—A case study
Keywords: شبکه های متابولیک; Information visualization; Metabolic networks; Omix
Robustness of metabolic networks: A review of existing definitions
Keywords: شبکه های متابولیک; Robustness; Metabolic networks; Graph theory; Constraint-based approaches
Metabolic network destruction: Relating topology to robustness
Keywords: شبکه های متابولیک; Metabolic networks; Flux balance analysis; Network topology; Robustness
Determination of flux directions by thermodynamic network analysis: Computing informative metabolite pools
Keywords: شبکه های متابولیک; Metabolic networks; Network thermodynamics; Flux directions; Monte Carlo method; Gibbs sampler
An integrated knowledge-based approach for modelling biochemical reaction networks
Keywords: شبکه های متابولیک; Metabolic networks; Pharmacophores; Graph-theory; Reaction generation; Reaction pathways; Mechanism mis-match
A note on the complexity of finding and enumerating elementary modes
Keywords: شبکه های متابولیک; Metabolic networks; Computational complexity; Elementary modes; Enumeration
A detailed metabolic flux analysis of an underdetermined network of CHO cells
Keywords: شبکه های متابولیک; Metabolic flux analysis; Mammalian cells; Metabolic networks; Underdetermined systems; Convex analysis
Global sensitivity analysis in dynamic metabolic networks
Keywords: شبکه های متابولیک; Global sensitivity analysis; Metabolic networks; DAE systems
On the stability of metabolic cycles
Keywords: شبکه های متابولیک; Metabolic networks; Structural kinetic modeling; Autocatalytic cycles
Soft constraints-based multiobjective framework for flux balance analysis
Keywords: شبکه های متابولیک; Bioartificial liver; Hepatocytes/linear physical programming; Metabolic networks; Multiobjective optimization; Pareto optimality
Phytochemical diversity: The sounds of silent metabolism
Keywords: شبکه های متابولیک; Silent metabolism; Occult metabolic capacity; Plant secondary metabolism; Natural product biosynthesis; Metabolic engineering; Metabolic networks;
Modes and cuts in metabolic networks: Complexity and algorithms
Keywords: شبکه های متابولیک; Metabolic networks; Algorithms; Computational complexity; Stoichiometry; Linear programming; Enumeration
Modeling and simulation of metabolic networks for estimation of biomass accumulation parameters
Keywords: شبکه های متابولیک; Metabolic networks; Hybrid systems; Parameter estimation; Optimization; Dynamic optimization
Stoichiometric analysis of self-maintaining metabolisms
Keywords: شبکه های متابولیک; Stoichiometric analysis; Self-maintaining systems; Metabolic networks;
Metabolic networks are NP-hard to reconstruct
Keywords: شبکه های متابولیک; Reconstruction; Metabolic networks; Completeness; Approximation;
Stoichiometric modelling of cell metabolism
Keywords: شبکه های متابولیک; stoichiometric modelling; metabolic networks; flux balance analysis; metabolic flux analysis; elementary modes; extreme pathways; flux spectrum approach
Graph models and mathematical programming in biochemical network analysis and metabolic engineering design
Keywords: شبکه های متابولیک; Biological networks; Metabolic networks; Petri nets; Linear programming
Computational methodologies for genome evolution and functional association
Keywords: شبکه های متابولیک; Computational genomics; Metabolic networks; Systems biology
New network architecture for stoichiometrically, thermodynamically and kinetically balanced metabolic reaction systems
Keywords: شبکه های متابولیک; Reaction routes; Reaction route networks; Metabolic networks;
The Identification of Similarities between Biological Networks: Application to the Metabolome and Interactome
Keywords: شبکه های متابولیک; network comparison; metabolic networks; protein interactions; systems biology
Analysis of the oscillatory kinetics of glycolytic intermediates in a yeast extract by FT-IR spectroscopy
Keywords: شبکه های متابولیک; Infrared spectroscopy; Chemometrics; Metabolic networks; Systems biology
The role of log-normal dynamics in the evolution of biochemical pathways
Keywords: شبکه های متابولیک; 89.75.â k; 87.14.Gg; 87.15.Aa; 87.15.Vv; Metabolic networks; Evolution of networks; Scale-free networks; Self-organization; Stochastic process;