Keywords: حداقل انرژی آزاد; AGRIS; Arabidopsis Gene Regulatory Information Server; AtcisDB; Arabidopsis thaliana cis-regulatory element database; AtPAN; Arabidopsis thaliana Promoter Analysis Net; AtRegNet; Arabidopsis thaliana regulatory network; AtTFDB; Arabidopsis thaliana transc
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Keywords: حداقل انرژی آزاد; Particle swarm optimization; Minimum free energy; Hydrogen bond model; Nearest neighbor database; Combinatorial optimization; RNA secondary structure
A family based triad study evaluating the role of MTHFR gene polymorphisms in spontaneous abortions
Keywords: حداقل انرژی آزاد; MTHFR; methylenetetrahydrofolate reductase; ARMS-PCR; Amplification Refractory Mutation System-Polymerase Chain Reaction method; OR; odds ratios; CI; confidence intervals; MFE; minimum free energy; kcal/mol; kilocalorie/mole; mRNA; messenger ribonucleic
Study of association the single nucleotide polymorphisms (rs6631) in 3â²-UTR CGA gene with male infertility in Iranian population
Keywords: حداقل انرژی آزاد; CGA; Glycoprotein hormone, alpha polypeptide gene; FSH; Follicle stimulating hormone; LH; Luteinizing hormone; TSH; Thyroid stimulating hormone; CG; Chorionic gonadotropin; SNP; Single nucleotide polymorphism; 3â²-UTR; 3´untranslated region; miRNA-bindi
Hsa-miR-11181 regulates Wnt signaling pathway through targeting of APC2 transcripts in SW480 cell line
Keywords: حداقل انرژی آزاد; Wnt; wingless-type; APC; adenomatosis polyposis coli; Axin; axis inhibition protein; FZ; frizzled; LEF; lymphoid enhancer binding factor; TCF; T-cell-specific factor; GSK3-β; glycogen synthase kinase 3-beta; TRE; transcriptional response element; Dsh; di
Association between miR-218 rs11134527 polymorphism and risk of selected types of cancer in Asian population: An updated meta-analysis of case-control studies
Keywords: حداقل انرژی آزاد; CIs; confidence intervals; ESCC; esophageal squamous cell carcinoma; MFE; minimum free energy; miRNA; microRNA; NSSLC; non-small cell lung cancer; ORs; odds ratio; PCR; polymerase chain reaction; RFLP; restriction fragments length polymorphism; UTR; untra
A specific haplotype in potential miRNAs binding sites of secreted frizzled-related protein 1 (SFRP1) is associated with BMD variation in osteoporosis
Keywords: حداقل انرژی آزاد; BMD; bone mineral density; BMC; bone mineral content; BMI; body mass index; MFE; minimum free energy; PCR; polymerase chain reaction; RFLP; restriction-fragment length polymorphism; SFRP1; secreted frizzled-related protein 1; SNP; single nucleotide polymo
Bioinformatics profiling and expressional studies of microRNAs in root, stem and leaf of the bioenergy plant switchgrass (Panicum virgatum L.) under drought stress
Keywords: حداقل انرژی آزاد; Biofuel crop; Abiotic stress; Regulatory RNAs; qRT-PCR; Aly; Arabidopsis lyrata; AP; APETELA; ARF; Auxin Response Factor; Ath; Arabidopsis thaliana; ATP; Adenosine Tri Phosphate; BLAST; Basic Local Alignment Search Tool; BLASTx; Translated Nucleotide Prot
Remarkable sequence polymorphisms in 18S rDNA of Pleuronichthys cornutus (Pleuronectiformes: Pleuronectidae)
Keywords: حداقل انرژی آزاد; DNA; Deoxyribonucleic acid; rDNA; DNA coding for rRNA, ribosomal RNA gene; ITS; internal transcribed spacer; IGS; Intergenic spacer; PCR; Polymerase chain reaction; dNTP; Deoxyribonucleoside triphosphate; MFE; minimum free energy; K2P; Kimura-2-parameter;
Mitochondrial tRNALeu(UUR) C3275T, tRNAGln T4363C and tRNALys A8343G mutations may be associated with PCOS and metabolic syndrome
Keywords: حداقل انرژی آزاد; PCOS; polycystic ovary syndrome; T2DM; type 2 diabetes mellitus; MetS; metabolic syndrome; mtDNA; mitochondrial DNA; TG; triglyceride; HbA1c; Hemoglobin A1c; MMP; mitochondrial membrane potential; ROS; reactive oxygen species; PMNs; polymononuclear leukoc
In silico design of ligand triggered RNA switches
Keywords: حداقل انرژی آزاد; UTR; untranslated region; mRNA; messenger RNA; SELEX; Systematic Evolution of Ligands by EXponential enrichment; MFE; minimum free energy; RBS; Ribosome Binding Site; Inverse folding; Multi state design; RNA design; Riboswitch; Objective function; RNA kin
RNA editing independently occurs at three mir-376a-1 sites and may compromise the stability of the microRNA hairpin
Keywords: حداقل انرژی آزاد; A; adenosine; ADAR; adenosine deaminase; Cq; quantification cycle; dsRNA; double-stranded RNA; G; guanosine; I; inosine; MFE; minimum free energy; mRNA; messenger RNA; miRNA; microRNA; NGS; next generation sequencing; nt; nucleotide; RT-qPCR; real time qu
Is Pichia pastoris a realistic platform for industrial production of recombinant human interferon gamma?
Keywords: حداقل انرژی آزاد; Biopharmaceuticals; Pichia pastoris; Protein expression; Interferon gamma; Low-abundance RNA; Minimum free energy;
The effects of structure on pre-mRNA processing and stability
Keywords: حداقل انرژی آزاد; MFE; minimum free energy; DP; dynamic programming; MEA; maximum expected accuracy; RBP; RNA-binding protein; U2AF2; U2 Small Nuclear RNA Auxiliary Factor 2; HLA; Human Leukocyte Antigen; SNP; single nucleotide polymorphism; HGMD; Human Gene Mutation Datab
Multi-objective two-level swarm intelligence approach for multiple RNA sequence-structure alignment
Keywords: حداقل انرژی آزاد; Multi-objective optimization; RNA secondary structure; Multiple sequence alignment; Particle swarm optimization; Non-dominated solutions; Pareto optimal solution; Minimum free energy; Conflicting objectives;
Long noncoding RNAs: Unexplored players in the drug response of the sea louse Caligus rogercresseyi
Keywords: حداقل انرژی آزاد; lncRNAs; long non-coding RNAs; GC; guanine-cytosine; ncRNAs; non-coding RNAs; miRNAs; microRNAs; siRNAs; small interfering RNAs; piRNAs; PIWI-interacting RNAs; MFE; minimum free energy; RPKM; transcript as reads per kilobase of exon model per million mapp
Associating genetic variation at Perilipin 1, Complement Factor D and Adiponectin loci to the bone health status in North Indian population
Keywords: حداقل انرژی آزاد; PLIN1; Perilipin 1; CFD; Complement Factor D; ADIPOQ; Adiponectin; QUS; quantitative ultrasound; BMD; bone mineral density; MSC; mesenchymal stem cell; T2D; type 2 diabetes; HWE; Hardy-Weinberg Equilibrium; OR; odds ratio; LD; linkage disequilibrium; MDR;
MMP 1 circulating levels and promoter polymorphism in risk prediction of coronary artery disease in asymptomatic first degree relatives
Keywords: حداقل انرژی آزاد; CAD; coronary artery disease; LDL; low density lipoprotein; MMP; matrix metalloproteinase; NSTEMI; non-ST elevated myocardial infarction; STEMI; ST elevated myocardial infarction; FDRS; first degree relatives; TGL; triglycerides; GPO; glycerol phosphate o
Using temperature effects to predict the interactions between two RNAs
Keywords: حداقل انرژی آزاد; RNA-RNA interaction; RNA secondary structure; Minimum free energy;
The effect of rare codons following the ATG start codon on expression of human granulocyte-colony stimulating factor in Escherichia coli
Keywords: حداقل انرژی آزاد; CAI; codon adaptation index (an index of codon usage bias towards the codon usage of highly expressed genes); hG-CSF; human granulocyte colony stimulating factor; MFE; minimum free energy; rhG-CSF; recombinant hG-CSF; SD; Shine-Dalgarno; Granulocyte-colon
Research paperIdentification of differentially expressed microRNA in the stems and leaves during sugar accumulation in sweet sorghum
Keywords: حداقل انرژی آزاد; RT-qPCR; real-time quantitative PCR; NCBI; National Center of Biotechnology Information; miRNA; microRNA; pre-miRNA; microRNA precursor; pri-miRNA; microRNA primary transcript; GO; Gene Ontology; MFE; minimum free energy; MFEI; minimum fold energy index;
RNA secondary structure prediction based on SHAPE data in helix regions
Keywords: حداقل انرژی آزاد; Minimum free energy; RNA secondary structure; SHAPE data;
Profiling microRNAs and their targets in an important fleshy fruit: Tomato (Solanum lycopersicum)
Keywords: حداقل انرژی آزاد; aly; Arabidopsis lyrata; ath; Arabidopsis thaliana; bdi; Brachypodium distachyon; BLAST; Basic Local Alignment Search Tool; dbEST; Database of EST; DCL1; Dicer-like Enzyme1; ESTs; Expressed Sequence Tags; gma; Glycine max; MFE; Minimum Free Energy; MIR; M
Combined small RNA and degradome sequencing reveals microRNA regulation during immature maize embryo dedifferentiation
Keywords: حداقل انرژی آزاد; ARF; auxin response factor; CK; the control; DEM; differentially expressed miRNA; Dicer; double-stranded-specific RNase; GA; gibberellin; HLH; helix-loop-helix; MFE; minimum free energy; miRNA; microRNA; NAM; no apical meristem; QTL; quantitative trait lo
Identification and characterization of the microRNAs and their targets in Salmo salar
Keywords: حداقل انرژی آزاد; BLAST; Basic local alignment search tool; dsRNA; Double-stranded RNA; ESTs; Expressed sequence tags; mRNA; Messenger RNA; miRNAs; MicroRNAs; mfe; Minimum free energy; pre-miRNAs; miRNAs precursor; NCBI; National Center for Biotechnology Information; nt; N
A heuristic approach to RNA–RNA interaction prediction
Keywords: حداقل انرژی آزاد; RNA secondary structure; Minimum free energy
Discovering numerical laws of plant microRNA by evolution
Keywords: حداقل انرژی آزاد; MFE; minimum free energy; AMFE; adjusted minimum free energy; MFEI; minimum free energy index; PESR; positive evolution selection ratio; Plant evolution; MicroRNA; Numerical feature; Secondary structure of microRNA; Information entropy; Minimum free energ
Analysis of tRNA abstract shapes of precursor/derivative amino acids in Archaea
Keywords: حداقل انرژی آزاد; tRNA; transfer RNA; CET; coevolution theory; P-tRNA; precursor tRNA; D-tRNA; derivative tRNA; mfe; minimum free energy; LUCA; last universal common ancestor; Genetic code; RNA plasticity; Wong's coevolution theory; RNA evolution; Plastic map;
Minimal states and maximum free energies of materials with memory
Keywords: حداقل انرژی آزاد; Continuum thermodynamics; Materials with memory; Viscoelasticity; Minimum free energy; Maximum free energy; Function of state; Frequency domain; Analyticity; Isolated singularities; Branch cuts