Keywords: ترتیب توالی چندگانه; Swarm intelligence; Multiple sequence alignment; Characteristics-based framework; Evolutionary algorithms;
مقالات ISI ترتیب توالی چندگانه (ترجمه نشده)
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Keywords: ترتیب توالی چندگانه; Multiobjective optimization; Multiple sequence alignment; Characteristic-based; Evolutionary algorithms;
Keywords: ترتیب توالی چندگانه; Multi-drug resistance; Polymyxin resistance; Phosphoethanolamine transferase; Multiple sequence alignment; Phylogenetic analysis;
Keywords: ترتیب توالی چندگانه; MSA; Multiple Sequence Alignment; HRV; human rhinovirus; PS; Fourier power spectrum; DFT; discrete Fourier transform; CPS; cumulative Fourier power spectrum; COI; cytochrome oxidase subunit I; HA; hemagglutinin; NA; neuraminidase; Cumulative Fourier power
Keywords: ترتیب توالی چندگانه; LGT; lateral gene transfer; BALOs; Bdellovibrio and like organisms; IMG; Integrated Microbial Genomes; COGs; orthologous groups of proteins; MSA; multiple sequence alignment; RSD; Reciprocal Smallest Distance; Gene gain and loss; BALOs; Bacteriovorax; Bde
Keywords: ترتیب توالی چندگانه; Phylogenetics; Desaturase; Peptide pattern recognition; Multiple sequence alignment;
Keywords: ترتیب توالی چندگانه; Alarm flood analysis; Time-stamped sequences; Multiple sequence alignment; Smith-Waterman algorithm; Industrial alarm monitoring;
Keywords: ترتیب توالی چندگانه; RPD; repeat protein domain; MSA; multiple sequence alignment; PPI; protein-protein interaction; TPR; tetratricopeptide repeat; ANK; Ankyrin repeat; ExAC; Exome Aggregation Consortium; SNV; single nucleotide variant; DAF; derived allele frequency; PDB; P
Keywords: ترتیب توالی چندگانه; Biological knowledge; Aligner decision making; Multiple sequence alignment; Multiobjective optimization;
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; Genetic algorithm; Multiobjective function;
Keywords: ترتیب توالی چندگانه; Artificial bee colony; Multiobjective optimization; Multiple sequence alignment; Evolutionary computation; Swarm intelligence; Bioinformatics
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; Multi-objective optimization; GA; ACO; ABC; PSO; GA-ABC; MO-BFO;
Keywords: ترتیب توالی چندگانه; IspS; isoprene synthase; DMAPP; dimethylallyl pyrophosphate; MEP; methylerythritol phosphate; MEV; mevalonate; IPTG; isopropyl β-D-1-thiogalactopyranoside; CDW; cell dry weight; TSP; terpene synthase; TSP-b; terpene synthase protein family clade b; MSA;
Keywords: ترتیب توالی چندگانه; Pyrimidine biosynthesis; Orotidine monophosphate decarboxylase; Ligand-enzyme interactions; Antimalarial agents; BMP; barbituric acid ribosyl 5â²-monophosphate (6-hydroxy UMP); CTP; cytidine 5â²-triphosphate; dCTP; deoxycytidine 5â²-triphosphate; HMOA;
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; Multi-objective genetic algorithm; Bioinformatics;
An approach for COFFEE objective function to global DNA multiple sequence alignment
Keywords: ترتیب توالی چندگانه; 00-01; 99-00; Multiple sequence alignment; Genetic Algorithm; Optimization;
New insights into the phylogeny of the TMBIM superfamily across the tree of life: Comparative genomics and synteny networks reveal independent evolution of the BI and LFG families in plants
Keywords: ترتیب توالی چندگانه; Bax inhibitor 1; Gene family evolution; Lifeguard; Programmed cell death; Synteny network; TMBIM; ER; endoplasmic reticulum; FtsH; filamentous temperature-sensitive; GA; Golgi apparatus; GAAP; Golgi anti-apoptotic protein; GHITM; growth-hormone inducible
Functional interaction of low-homology FRPs from different cyanobacteria with Synechocystis OCP
Keywords: ترتیب توالی چندگانه; OCP; orange carotenoid protein, holoprotein; OCPAA; OCP with amino acid substitutions Y201A and W288A, holoprotein; NTE; N-terminal extension (comprising the αA helix up to amino acid 20); ÎNTE; OCP with the 12 most N-terminal amino acids deleted, holop
PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; Locality-sensitive hash; A-Star; Parallel algorithms;
Genome-wide identification, cloning and characterization of SNARE genes in bread wheat (Triticum aestivum L.) and their response to leaf rust
Keywords: ترتیب توالی چندگانه; SNARE; soluble N-ethylmaleimide sensitive factor adaptor protein; Receptors TMD; Trans-membrane domain; PR; Pathogenesis-related; qRT-PCR; quantitative Real Time PCR; CDD; Conserved Domain Database; HMM; Hidden Markov Model; MSA; Multiple sequence alignme
Original articleFragmented protein sequence alignment using two-layer particle swarm optimization (FTLPSO)
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; Particle swarm optimization; Fragmentation; Two-layer PSO;
Multi-objective two-level swarm intelligence approach for multiple RNA sequence-structure alignment
Keywords: ترتیب توالی چندگانه; Multi-objective optimization; RNA secondary structure; Multiple sequence alignment; Particle swarm optimization; Non-dominated solutions; Pareto optimal solution; Minimum free energy; Conflicting objectives;
Molecular, structural, and phylogenetic analyses of Taxus chinensis JAZs
Keywords: ترتیب توالی چندگانه; MJ; Methyl Jasmonate; GA; Gibberellin; MSA; multiple sequence alignment; NINJA; novel interactor of JAZ; EAR; ethylene-responsive element binding factor-associated amphiphilic repression; JA signaling; JAZ; Gymnosperm; Angiosperm; Taxus chinensis;
In silico characterization of TTHA0596: A potential Zn2Â + binding protein of ATP-binding cassette transporter
Keywords: ترتیب توالی چندگانه; APBS; adaptive Poisson Boltzmann solver; ATP; ATP-binding cassette; Fe; iron; HP; hypothetical protein; Mn; manganese; MSA; multiple sequence alignment; NBD; nucleotide binding domain; ORF; open reading frame; PMBP; periplasmic metal binding protein; RMSD
MKS1 mutations cause Joubert syndrome with agenesis of the corpus callosum
Keywords: ترتیب توالی چندگانه; Joubert syndrome; Meckel-Gruber syndrome; Multiple sequence alignment; Evolutionary conservation; MKS1; Corpus-Callosum agenesis; Genotype-phenotype correlation; Ciliopathy; Dysmorphology; Syndromology; Bioinformatics; Missense-mutation; Founder mutation
Structure-function characterization of the human mitochondrial thiamin pyrophosphate transporter (hMTPPT; SLC25A19): Important roles for Ile33, Ser34, Asp37, His137 and Lys291
Keywords: ترتیب توالی چندگانه; Thiamin pyrophosphate transporter; Mitochondria; Site-directed mutagenesis; Protein-docking modeling; Multiple sequence alignment; Uptake;
Engineering a thermostable iron superoxide dismutase based on manganese superoxide dismutase from Thermus thermophilus
Keywords: ترتیب توالی چندگانه; Manganese superoxide dismutase; Site-directed mutagenesis; Multiple sequence alignment; Megaprimer-PCR; Metal-binding specificity; Thermostable Fe-SOD
A multi-subunit based, thermodynamically stable model vaccine using combined immunoinformatics and protein structure based approach
Keywords: ترتیب توالی چندگانه; APC; antigen presenting cells; CTL; cytolytic T-lymphocytes; FASTA; FAST-ALL; HBHA; heparin-binding hemagglutinin; HTL; helper T-lymphocytes; IC50; inhibitory concentration; IEDB-AR; immune epitope database analysis resource; JCAT; Java Codon Adaptation T
Structural insight with mutational impact on tyrosinase and PKC-β interaction from Homo sapiens: Molecular modeling and docking studies for melanogenesis, albinism and increased risk for melanoma
Keywords: ترتیب توالی چندگانه; MD; Molecular dynamics; WT; Wild-type; MT; Mutant-type; PKC; Protein kinase-C; P.I.C.; Protein Interaction Calculator; Molecular modeling; Melanogenesis; Mutational impact; Multiple sequence alignment; Docked protein-protein interaction and biostatistics;
MuffinEc: Error correction for de Novo assembly via greedy partitioning and sequence alignment
Keywords: ترتیب توالی چندگانه; Genomic error correction; Next generation sequencing; De novo; Multiple sequence alignment;
Molecular spectrum of the SPAST, ATL1 and REEP1 gene mutations associated with the most common hereditary spastic paraplegias in a group of Polish patients
Keywords: ترتیب توالی چندگانه; AAA; ATP-ase associated with diverse activities; AD; autosomal dominant; ER; endoplasmic reticulum; HSP; hereditary spastic paraplegia; MIT; microtubule interacting and trafficking domain; MLPA; multiplex ligation-dependent probe amplification; MSA; multi
Bioinformatics of cardiovascular miRNA biology
Keywords: ترتیب توالی چندگانه; MiRNAs; Multiple sequence alignment; RNA secondary structure; Database; Omics; Heart;
Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species
Keywords: ترتیب توالی چندگانه; miRNA; microRNA; DCL1; DICER LIKE1; PTGS; post transcriptional gene silencing; HD-ZIPIII; class III homeodomain leucine-zipper; PHB; PHABULOSA; PHV; PHAVOLUTA; REV; REVOLUTA; ATHB8/15; Arabidopsis thaliana HOMEOBOX8/15; MSA; multiple sequence alignment; B
Conserved motifs of MutL proteins
Keywords: ترتیب توالی چندگانه; MutL; Multiple sequence alignment; MMR; DNA repair; MLH1; PMS2;
Cantareus aspersus metallothionein metal binding abilities: The unspecific CaCd/CuMT isoform provides hints about the metal preference determinants in metallothioneins
Keywords: ترتیب توالی چندگانه; MSA; multiple sequence alignment; MT; metallothionein; Cantareus aspersus metallothionein; Cadmium; Copper; Sequence determinant;
Protein sequence comparison based on K-string dictionary
Keywords: ترتیب توالی چندگانه; SVD; Singular Value Decomposition; MSA; multiple sequence alignment; ND1; NADH dehydrogenase 1; K-string; Sequence comparison; Frequency vector; Cardinality; Singular Value Decomposition;
Coding nucleic acids are chaperons for protein folding: A novel theory of protein folding
Keywords: ترتیب توالی چندگانه; dG; Gibbs free energy (?G); ddG; calculated difference between Gibbs free energies; CDS; coding sequence; PDB; Protein Data Bank; RNA; ribonucleic acid; 3D; three dimensional; 2D; two dimensional; mRNA; messenger ribonucleic acid; RCM; residue contact map
The Global Sequence Signature algorithm unveils a structural network surrounding heavy chain CDR3 loop in Camelidae variable domains
Keywords: ترتیب توالی چندگانه; CDR; complementarity determining region; FR; framework; GSS; Global Sequence Signature analysis; Ig; immunoglobulin G; MSA; multiple sequence alignment; MDS; multidimensional scaling; PCA; principal component analysis; SCA; statistical coupling analysis;
Mdm10 is an ancient eukaryotic porin co-occurring with the ERMES complex
Keywords: ترتیب توالی چندگانه; Eukaryotic β-barrel protein; Multiple sequence alignment; Homology modeling; Phylogenetic analysis; ERMES; SAM;
Plasmodium falciparum RuvB2 translocates in 5â²-3â² direction, relocalizes during schizont stage and its enzymatic activities are up regulated by RuvB3 of the same complex
Keywords: ترتیب توالی چندگانه; AAAÂ +; ATPases Associated with various cellular Activities; DAB; 3,3-diaminobenzidine tetrahydrochloride; DAPI; 40,60-di-amidino-2-phenylindole dihydrochloride; e-PfRuvBs; endogenous PfRuvBs; HRP; horseradish peroxidise; ID; immuunodepletion; IP; immunop
GG-MSA — A GPU-based, fast and accurate algorithm for multiple sequence alignment
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; The T-Coffee algorithm; GPU heuristics; Multiple GPUs applications; Bioinformatics
Cloning and characterization of NBS-LRR encoding resistance gene candidates from Tomato Leaf Curl New Delhi Virus resistant genotype of Luffa cylindrica Roem
Keywords: ترتیب توالی چندگانه; Cucurbits; Luffa cylindrica; Multiple sequence alignment; NBS-LRRs; Resistance gene candidatesHD, hydrophobic domain; NBS-LRR, nucleotide binding site-Leucine-rich repeat; min, minutes; N-J, Neighbour-Joining tree; s, seconds; sgRGCs, sponge gourd resista
A data parallel strategy for aligning multiple biological sequences on multi-core computers
Keywords: ترتیب توالی چندگانه; Data parallelism; Parallel algorithm; Multi-core; Multiple sequence alignment; Biological sequences; Clustering
Association between rs4673 (C/T) and rs13306294 (A/G) haplotypes of NAD(P)H oxidase p22phox gene and severity of stenosis in coronary arteries
Keywords: ترتیب توالی چندگانه; ARMS; amplification refractory mutation system; BMI; body mass index; CAD; coronary artery disease; CYBA; cytochrome b alpha; EDTA; ethylenediaminetetraacetic acid; His; histidine; HGNC; HUGO Gene Nomenclature Committee; LDL; low density lipoprotein; MSA;
Multiple sequence alignment-inspired mutagenesis of marine epoxide hydrolase of Mugil cephalus for enhancing enantioselective hydrolytic activity
Keywords: ترتیب توالی چندگانه; Epoxide hydrolase; Multiple sequence alignment; Mutagenesis; Mugil cephalus
Isolation and characterization of novel variants of BBI coding genes from the legume Lathyrus sativus
Keywords: ترتیب توالی چندگانه; Grass pea; Bowman-Birk isoforms; Proteolytic enzymes; Reactive site; Recombinant proteins; Inhibitory properties; Comparative modeling; APNE; N-acetyl-DL-phenylalanine-Ã-naphthyl estere; BApNA; N-benzoyl-DL-arginine-p-nitroanilide; BBIs; Bowman-Birk
A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; Pyrosequencing; Parallel algorithms; Computational biology; Genome alignment and mapping
Incremental word learning: Efficient HMM initialization and large margin discriminative adaptation
Keywords: ترتیب توالی چندگانه; Incremental word learning; Learning from few examples; Speech recognition; Multiple sequence alignment; Discriminative training; Bootstrapping
Multiple sequence alignment using the Hidden Markov Model trained by an improved quantum-behaved particle swarm optimization
Keywords: ترتیب توالی چندگانه; Multiple sequence alignment; Hidden Markov Model; Parameter optimization; Quantum-behaved particle swarm optimization; Population diversity
Computational approaches to selecting and optimising targets for structural biology
Keywords: ترتیب توالی چندگانه; MSA; Multiple Sequence Alignment; PTM; Post Translational Modification; SSPF; Scottish Structural Proteomics Facility; MCC; Matthew's correlation coefficient; AROC; Area Under the Receiver Operator Characteristic curve; Target selection; Crystallisation