Keywords: NGS، توالی نسل بعدی; MA, microarray; HK, housekeeping; RNA-seq, RNA-sequencing; NGS, next generation sequencing; MPSS, massively parallel signature sequencing; Est, expressed sequence tag technique; PC, probe coverage; DB, detection breadth; GO, gene ontology; BP, biological
مقالات ISI NGS، توالی نسل بعدی (ترجمه نشده)
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Keywords: NGS، توالی نسل بعدی; RA, Rheumatoid Arthritis; PM, Personalized Medicine; GWAS, Genome Wide Association Study; NGS, Next generation Sequencing; SNP, Single Nucleotide Polymorphism; eQTLs, Expression quantitative trait loci; ACPA, anti–citrullinated peptide antibodiesGene poly
Keywords: NGS، توالی نسل بعدی; ARPKD, autosomal recessive polycystic kidney disease; ADPKD, Autosomal Dominant Polycystic Kidney Disease; nsSNPs, non-synonymous SNPs; SIFT, Sorting Intolerant From Tolerant; PolyPhen2, Polymorphism Phenotyping; NGS, Next generation sequencing; ISP, Ion
Keywords: NGS، توالی نسل بعدی; urinary bladder neoplasms; neoplastic cells; circulating; neoadjuvant therapy; pathology; molecular; genomicsCTC, circulating tumor cell; MVAC, methotrexate, vinblastine, doxorubicin and cisplatin; NGS, next generation sequencing; pStage, pathological sta
Keywords: NGS، توالی نسل بعدی; Circulating tumor DNA; Liquid biopsy; Intra-tumor heterogeneity; Disease monitoring; Molecular resistance; Early detectionctDNA, circulating tumor DNA; MPS, massive parallel sequencing; MRD, minimal residual disease; NGS, Next Generation Sequencing; PCR,
A FASTQ compressor based on integer-mapped k-mer indexing for biologist
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; KIC, K-mer Index Compressor; GB, gigabytes; RNA-seq, RNA sequencing; GUI, graphic user interfaceFASTQ compression; FASTQ sequence data compression; Integer-mapped k-mer indexing; Biologist-friendly NGS data compressor; Dat
Transcriptome analysis of Solanum melongena L. (eggplant) fruit to identify putative allergens and their epitopes
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; GC, Guanine and Cytosine; Nr, NCBI non-redundant protein database; BLAST, Basic Local Alignment Search Tool; GO, Gene Ontology; PE, paired end; SE, single end; ESTs, expressed sequence tags; Nt, nucleotide; UniProt, Univer
RNA-seq analysis of hippocampal tissues reveals novel candidate genes for drug refractory epilepsy in patients with MTLE-HS
Keywords: NGS، توالی نسل بعدی; MTLE-HS, mesial temporal lobe epilepsy-hippocampal sclerosis; RNAseq, RNA sequencing; AEDs, anti-epileptic drugs; DRE, drug resistant epilepsy; MDTs, multi drug transporters; NGS, next generation sequencing; ATL, anterior temporal lobectomy; AH, amygdalo-
From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; mt, mitochondrial; mtDNA, mitochondrial DNA; nt, nucleotide; bp, base pair; kb, kilobase pair; Mb, megabase pair; ori, origin of replication; orf, open reading frameNext generation sequencing; Repetitive DNA; Fungal mitoch
uGPA: unified Gene Pathway Analyzer package for high-throughput genome-wide screening data provides mechanistic overview on human diseases
Keywords: NGS، توالی نسل بعدی; GPA, gene set or pathway analysis; DGEs, differentially gene expressions; NGS, next generation sequencing; FDR, false discovery rate; TCGA, The Cancer Genome Atlas; AML, acute myeloid leukemiaGenome-wide screening; Pathway analysis; Gene set enrichment; M
A labor and cost effective next generation sequencing of PKHD1 in autosomal recessive polycystic kidney disease patients
Keywords: NGS، توالی نسل بعدی; PKHD1, polycystic kidney and hepatic disease 1 gene; ARPKD, recessive polycystic kidney disease; NGS, next generation sequencing; PGM, Personal Genome Machine; VC, variant caller; HGMD, Human Gene Mutation database; INDELS, insertion/deletion variants.Nex
Implementing amplicon-based next generation sequencing in the diagnosis of small cell lung carcinoma metastases
Keywords: NGS، توالی نسل بعدی; SCLC, small cell lung cancer; NSCLC, non-small cell lung cancer; NE, neuroendocrine; IHC, immunohistochemistry; NGS, next generation sequencing; FFPE, formalin-fixed and paraffin-embedded; SNP, single nucleotide polymorphism; EMT, epithelial mesenchymal t
Two mutations in nAChR beta subunit is associated with imidacloprid resistance in the Aphis gossypii
Keywords: NGS، توالی نسل بعدی; nAChR, nicotinic acetylcholine receptor; P450, cytochrome P450; ABC transporter, ATP binding cassette transporter; GST, glutathione S-transferase; UGT, UDP-glucuronosyltransferase; NGS, next generation sequencing; 2DE, two-dimentional electrophoresis; IEF
Comparisons of isomiR patterns and classification performance using the rank-based MANOVA and 10-fold cross-validation
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; TCGA, The Cancer Genome Atlas; BRCA, breast invasive carcinoma; DE, differentially expressed; MANOVA, multivariate analysis of variance; kNN, k-nearest neighbors; RF, Random Forest; FDR, false discovery rate; Q–Q, Quantile
Micro-RNAs and Next Generation Sequencing: New perspectives in Heart Failure
Keywords: NGS، توالی نسل بعدی; NGS, Next Generation Sequencing; MPS, Massive Parallel Sequencing; miRNA, micro-RNA; nt, nucleotide; BNP, brain natriuretic peptide or B-type natriuretic peptide; QRS, combination of Q, R and S waves' graphical deflections seen on a typical electrocardiog
MSPrecise: A molecular diagnostic test for multiple sclerosis using next generation sequencing
Keywords: NGS، توالی نسل بعدی; RRMS, relapsing–remitting multiple sclerosis; OND, other neurological disease; MS, multiple sclerosis; CNS, central nervous system; SHM, somatic hypermutation; CSF, cerebrospinal fluid; VH4, variable heavy chain family 4; NGS, next generation sequencing;
Performance of QF-PCR in targeted prenatal aneuploidy diagnosis: Indian scenario ★
Keywords: NGS، توالی نسل بعدی; QF-PCR, quantitative fluorescent PCR; RAT, rapid aneuploidy testing; FISH, fluorescence in-situ hybridization; MLPA, multiplex ligation dependent amplification; LOH, loss of heterozygosity assay (LOH assay); NGS, next generation sequencing; STR, short tan
NGS population genetics analyses reveal divergent evolution of a Lyme Borreliosis agent in Europe and Asia
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; SNP, single nucleotide polymorphism; LB, Lyme Borreliosis; EM, erythema migrans; dN/dS, ratio of non-synonymous to synonymous SNPs; FDR, false discovery rateBorrelia bavariensis; Ixodes ricinus; Ixodes persulcatus; Lyme di
Analysis of the crow lung transcriptome in response to infection with highly pathogenic H5N1 avian influenza virus
Keywords: NGS، توالی نسل بعدی; HPAIV, highly pathogenic avian influenza virus; NGS, next generation sequencing; IFN, interferon; IFNAR, interferon-alpha/beta receptor; SOCS, suppressor of cytokine signalling; TLR, toll-like receptors; AIV, avian influenza virus; RPKM, reads per kilobas
Assessment of genetic diversity and population structure of mung bean (Vigna radiata) germplasm using EST-based and genomic SSR markers
Keywords: NGS، توالی نسل بعدی; SSR, simple sequence repeat; EST-SSRs (eSSRs), expressed sequence tag-simple sequence repeats; gSSRs, genomic SSRs; MAS, marker assisted selection; NGS, next generation sequencing; He, expected heterozygosity; Na, number of alleles; Ne, effective number o
The genome of the Pacific oyster Crassostrea gigas brings new insights on the massive expansion of the C1q gene family in Bivalvia
Keywords: NGS، توالی نسل بعدی; C1qDC, C1q domain-containing; FREPs, fibrinogen-related proteins; ORF, Open Reading Frame; NGS, next generation sequencing; PAMP, pathogen associated molecular pattern; PRR, pathogen recognition receptor; SRA, Sequence Read ArchiveC1q; Crassostrea gigas;
Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
Keywords: NGS، توالی نسل بعدی; miRNA, microRNA; pre-miRNA, precursor microRNA; sRNA, small RNA; miRNA*, microRNA star; sRNAomes, small RNAomes; NGS, next generation sequencing; HTL, healthy tomato library; ITL, infected tomato library; gDNA, genomic DNALeaf curling; Micro RNA; Small RN
SOX9 dimerization domain mutation mimicking type 2 collagen disorder phenotype
Keywords: NGS، توالی نسل بعدی; Type 2 collagen disorders; SOX9; Campomelic dysplasiaACD, acampomelic campomelic dysplasia; NGS, next generation sequencing
Next generation sequencing based development of intron-targeting markers in tetraploid potato and their transferability to other Solanum species
Keywords: NGS، توالی نسل بعدی; IT, intron-targeting; NGS, next generation sequencing; RNA-Seq, RNA sequencing using NGS; Life Tech SOLiD, Life Technology-sequencing by oligonucleotide ligation and detection; NCBI, National Center for Biotechnology Information; SGN, Solanum Genomics Net
Early onset and severe clinical course associated with the m.5540G>A mutation in MT-TW
Keywords: NGS، توالی نسل بعدی; CoQ10, coenzyme Q10; COX, cytochrome c oxidase; CS, citrate synthase; EEG, electroencephalogram; MRI, magnetic resonance imaging; mtDNA, mitochondrial DNA; NADH, nicotinamide adenine dinucleotide dehydrogenase; NGS, next generation sequencing; SCA, spinoc
A preliminary Quality Control (QC) for next generation sequencing (NGS) library evaluation turns out to be a very useful tool for a rapid detection of BRCA1/2 deleterious mutations
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; GS, Gene Scan; QC, Quality Control; MPS, massive parallel sequencing; MLPA, multiplex ligation-dependent probe amplification; MAQ, multiplex amplicon quantificationBRCA1; BRCA2; Frameshift mutations; NGS; Breast cancer
Transcriptome analysis of Capsicum annuum varieties Mandarin and Blackcluster: Assembly, annotation and molecular marker discovery
Keywords: NGS، توالی نسل بعدی; GS-FLX, Genome Sequencer FLX system; NGS, next generation sequencing; PCR, polymerase chain reaction; SNP, single nucleotide polymorphism; SSR, simple sequence repeat; QTL, quantitative trait Locus; RNA, ribo nucleic acid; mRNA, messenger ribo nucleic aci
Assembly and annotation of full mitochondrial genomes for the corn rootworm species, Diabrotica virgifera virgifera and Diabroticabarberi (Insecta: Coleoptera: Chrysomelidae), using Next Generation Sequence data
Keywords: NGS، توالی نسل بعدی; tRNA, Transfer RNA; rRNA, Ribosomal RNA; PCG, Protein coding gene; MtD, Mitochondrial/mitochondrion; WCR, Western corn rootworm; NCR, Northern corn rootworm; ED, Extended diapause trait; ND, Non-diapause trait; NGS, Next Generation Sequencing; SRA, Short
Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)
Keywords: NGS، توالی نسل بعدی; bp, base pair(s); CR, control region; CSB, conserved sequence block; IGS, intergenic spacer; ML, maximum-likelihood; NGS, next generation sequencing; PCG, protein-coding genes; rRNA, ribosomal RNA; RSCU, relative synonymous codon usage; tRNA, transfer RNA
The eukaryotic genome, its reads, and the unfinished assembly
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; GC, guanine and cytosine levelNext generation sequencing; Eukaryotic genomics; Assembly-free genome analysis; Object-view separation; Microbial strain collection
Evolutionary anthropology and genes: Investigating the genetics of human evolution from excavated skeletal remains
Keywords: NGS، توالی نسل بعدی; aDNA, ancient DNA; Asp, Aspartic Acid; bp, base pair; HVR, Hypervariable Region; NGS, Next Generation Sequencing; PCR, Polymerase Chain Reaction; RFLP, Restriction Length Fragment PolymorphismHuman evolution; Paleogenetics; Ancient DNA; Human remains
Identification of novel splice variants in horn cancer by RNA-Seq analysis in Zebu cattle
Keywords: NGS، توالی نسل بعدی; AS, alternative splicing; BLAT, The BLAST Like Alignment Tool; BLAST, Basic Local Alignment Search Tool; HN, horn normal; HC, horn cancer; NGS, next generation sequencing; RT-PCR, reverse transcription- polymerase chain reaction; RT-qPCR, real-time quanti
Practical, ethical and regulatory considerations for the evolving medical and research genomics landscape
Keywords: NGS، توالی نسل بعدی; CLIA, Clinical Laboratory Improvements Amendments; NGS, Next generation sequencing; WGS, whole-genome sequencingGenomics; Whole genome sequencing; Ethics; Regulation; CLIA; Exome; Genetic testing
Transcriptomic analysis of incised leaf-shape determination in birch
Keywords: NGS، توالی نسل بعدی; NGS, next generation sequencing; WPM, woody plant medium; 6BA, 6-benzylamino purine; GA3, gibberellin A3; CTAB, hexadecyltrimethylammonium bromide; KEGG, Kyoto Encyclopedia of Genes and Genomes; COG, cluster of orthologous groups of proteins; GO, gene ont
Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation
Keywords: NGS، توالی نسل بعدی; CNV, copy number variation; FISH, fluorescent in situ hybridisation; GaII x, Illumina Genome Analyzer IIx; MLPA, multiplex ligation-dependent probe amplification; OMIM, Online Mendelian Inheritance in Man; NGS, next generation sequencing; Q-PCR, Quantitat
Jumping and gliding rodents: Mitogenomic affinities of Pedetidae and Anomaluridae deduced from an RNA-Seq approach
Keywords: NGS، توالی نسل بعدی; AIC, Akaike Information Criterion; AU test, Approximately Unbiased test; BP, Bootstrap Percentage; GTR, General Time Reversible; ML, Maximum Likelihood; NGS, Next Generation Sequencing; PP, Posterior Probability; RNA-Seq, RNA SequencingGraphiurus; Pedetes
Adaptive mutation of Acetobacter pasteurianus SKU1108 enhances acetic acid fermentation ability at high temperature
Keywords: NGS، توالی نسل بعدی; Acetic acid bacteria; Thermotolerance; Adaptive evolution; Comparative genome analysisAAB, acetic acid bacteria; NGS, next generation sequencing
nMETR: Technique for facile recovery of hypomethylation genomic tags
Keywords: NGS، توالی نسل بعدی; BLAT, BLAST-like alignment tool; C, cytidine; G, guanosine; MRE, methylation-sensitive restriction endonuclease; NCBI, National Center for Biotechnology Information; NGS, next generation sequencing; nMETR, non-methylated tag recovery; PCR, polymerase chai
Non-invasive prenatal diagnosis of single-gene disorders from maternal blood
Keywords: NGS، توالی نسل بعدی; PD, Prenatal diagnosis; NIPD, Non-invasive prenatal diagnosis; NGS, Next generation sequencing; ccffDNA, circulating cell-free fetal DNA; OMIM, Online Mendelian inheritance in man; CVS, Chorion villus sampling; QF-PCR, Quantitative fluorescent PCR; MLPA,
The transcriptomes of columnar and standard type apple trees (Malus x domestica) — A comparative study
Keywords: NGS، توالی نسل بعدی; Co, Columnar; NGS, next generation sequencing; SAM, shoot apical meristem; ABA, abscisic acid; IAA, indoleacetic acid; GA, gibberellic acid; A14, ‘A14-190-93’ (standard type apple); P28, ‘Procats28’ (columnar type apple); BORT, Blast Output Refinement Too
The salt-responsive transcriptome of Populus simonii × Populus nigra via DGE
Keywords: NGS، توالی نسل بعدی; DGE, digital gene expression; ROS, reactive oxygen species; MAPK, Mitogen-activated protein kinases; PSII, photosystem II; NGS, Next Generation sequencing; Fo, Basic chlorophyll fluorescence yield; Fm, maximal chlorophyll fluorescence yield; SBS, sequenci
Sequence-based marker development in wheat: Advances and applications to breeding
Keywords: NGS، توالی نسل بعدی; COS, Conserved Orthologous Set; ISBP, Insertion Site Polymorphism; MAS, Marker Assisted Selection; NGS, Next generation Sequencing; SNP, Single Nucleotide Polymorphism; SSR, Single Sequence Repeat; TE, Transposable ElementWheat; Molecular marker; Single n
Human papillomavirus genotyping by 454 next generation sequencing technology
Keywords: NGS، توالی نسل بعدی; HPV, human papillomavirus; PCR, polymerase chain reaction; DNA, deoxyribonucleic acid; NGS, next generation sequencing; LiPA, line probe assayGenotyping; Next generation sequencing; Human papillomavirus
Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation
Keywords: NGS، توالی نسل بعدی; EST, expressed sequenced tag; MDR, mathematically defined repeat; NGS, next generation sequencing; RE, repetitive elements; SD, segmental duplication; SINE, short interspersed element; TE, transposable element; WGS, whole genome shotgunGenome components;
Variable degrees of hearing impairment in a Dutch DFNX4 (DFN6) family
Keywords: NGS، توالی نسل بعدی; AC, air conduction; ARTA, age related typical audiograms; ATD, annual threshold deterioration; BC, bone conduction; dB, decibel; HL, hearing level; I-A, inter-aural; NGS, next generation sequencing; P95, 95th percentile; PTA1,2,4 kHz, pure-tone average at