Keywords: nt، نوکلئوتید; miRNA, microRNA; nt, nucleotide; RT-qPCR, reverse transcription quantitative polymerase chain reaction; TPM, transcripts per millionMicroRNA; Soybean; Flower; Carpel; Stamen; Petal
مقالات ISI nt، نوکلئوتید (ترجمه نشده)
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Keywords: nt، نوکلئوتید; hMPV, human metapneumovirus; RT-PCR, reverse transcription polymerase chain reaction; RTIs, respiratory tract infections; ICU, intensive care unit; F, fusion protein; G, glycoprotein; RNA, ribonucleic acid; nt, nucleotide; bp, base pair; kb, kilobaseRespi
Keywords: nt، نوکلئوتید; RNA methylation; Bi-profile Bayes; Dinucleotide frequency; k nearest neighbor; Support vector machinem6A, N6-methyladenosine; nt, nucleotide; SVM, support vector machine; MCC, Matthew's correlation coefficient; KNN, k nearest neighbor; BPB, bi-profile Bay
In silico analysis of 5′-UTRs highlights the prevalence of Shine–Dalgarno and leaderless-dependent mechanisms of translation initiation in bacteria and archaea, respectively
Keywords: nt، نوکلئوتید; bp, base pair; CDS, coding sequence; DNA, Deoxyribonucleic Acid; HGT, horizontal gene transfer; IF, initiation factor; mRNA, messenger Ribonucleic Acid; nt, nucleotide; ORF, open reading frame; RNA, Ribonucleic Acid; SD, Shine Dalgarno; TIS, translation i
Transcriptome analysis of Solanum melongena L. (eggplant) fruit to identify putative allergens and their epitopes
Keywords: nt، نوکلئوتید; NGS, next generation sequencing; GC, Guanine and Cytosine; Nr, NCBI non-redundant protein database; BLAST, Basic Local Alignment Search Tool; GO, Gene Ontology; PE, paired end; SE, single end; ESTs, expressed sequence tags; Nt, nucleotide; UniProt, Univer
The complete mitochondrial genome of Caenorhabditis remanei (Rhabditida: Rhabditoidae), in comparison with four other Caenorhabditis species
Keywords: nt، نوکلئوتید; mitogenome, mitochondrial genome; bp, base pair(s); nt, nucleotide; PCGs, protein coding genes; tRNAs, transfer RNA genes; rRNAs, ribosomal RNA genes; A, Adenosine; T, Thymidine; G, Guanosine; C, Cytidine; Ψ, pseudouridine; H-strand, heavy strand; RSCU, r
Mitochondrial genome characterization of Tecia solanivora (Lepidoptera: Gelechiidae) and its phylogenetic relationship with other lepidopteran insects
Keywords: nt، نوکلئوتید; A, adenosine; G, guanosine; C, cytidine; T, thymidine; Nt, nucleotide; rRNA, ribosomal RNA; tRNA, transfer RNA; mtDNA, mitochondrial DNAMitogenome; T. solanivora; Lepidoptera; Genes; Phylogeny
Molecular identification and functional characterisation of the interferon regulatory factor 1 in the blunt snout bream (Megalobrama amblycephala)
Keywords: nt، نوکلئوتید; MaIRF1; Aeromonas hydrophila; Cloning; ExpressionMaIRF1, Megalobrama amblycephala interferon regulatory factor 1; aa, amino acid; IFN, interferon; nt, nucleotide; hpi, hours post injection; NLS, nuclear localization signal; DBD, DNA-binding domain; IAD, I
From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity
Keywords: nt، نوکلئوتید; NGS, next generation sequencing; mt, mitochondrial; mtDNA, mitochondrial DNA; nt, nucleotide; bp, base pair; kb, kilobase pair; Mb, megabase pair; ori, origin of replication; orf, open reading frameNext generation sequencing; Repetitive DNA; Fungal mitoch
POT1–TPP1 Binding and Unfolding of Telomere DNA Discriminates against Structural Polymorphism
Keywords: nt، نوکلئوتید; ss, single-stranded; ssDNA, single-stranded DNA; nt, nucleotide; POT1, Protection of telomeres 1; OB, oligonucleotide binding; SE-HPLC, size-exclusion HPLC; CD, circular dichroism; EMSA, electrophoretic mobility shift assays; TBE, Tris/Borate/EDTAtelomere
Disruption of HNF1α binding site causes inherited severe unconjugated hyperbilirubinemia
Keywords: nt، نوکلئوتید; CAR, Constitutive androstane receptor; CNS, Crigler-Najjar syndrome; gtPBREM, phenobarbital-responsive enhancer module; HNF1α, Hepatic nuclear factor 1α; NT, nucleotide; PXR, Pregnane X Receptor; UCB, unconjugated bilirubin; UGT1A1, Uridine Diphosphate Gl
Micro-RNAs and Next Generation Sequencing: New perspectives in Heart Failure
Keywords: nt، نوکلئوتید; NGS, Next Generation Sequencing; MPS, Massive Parallel Sequencing; miRNA, micro-RNA; nt, nucleotide; BNP, brain natriuretic peptide or B-type natriuretic peptide; QRS, combination of Q, R and S waves' graphical deflections seen on a typical electrocardiog
The mitochondrial genome of a Texas outbreak strain of the cattle tick, Rhipicephalus (Boophilus) microplus, derived from whole genome sequencing Pacific Biosciences and Illumina reads
Keywords: nt، نوکلئوتید; A, adenine; bp, base pairs; C, cytosine; DNA, deoxyribonucleic acid; ds, double-stranded; G, guanine; kb, kilobase; min, minutes; mt, mitochondria; nt, nucleotide; PCR, polymerase chain reaction; RNA, ribonucleic acid; T, thymineCattle tick; Mitochondrial
miR-24-2 regulates genes in survival pathway and demonstrates potential in reducing cellular viability in combination with docetaxel
Keywords: nt، نوکلئوتید; miR, microRNA; nt, nucleotide; UTR, untranslated region; NCBI, National Centre for Biotechnology Information; PCR, polymerase chain reaction; MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromidemiR-24-2; Cell death; Apoptosis; Docetaxel; Micr
In silico identification, characterization and expression analysis of miRNAs in Cannabis sativa L.
Keywords: nt، نوکلئوتید; ESTs, Expressed Sequence Tags; TSA, transcribed sequence assemblies; MiRNAs, MicroRNAs; DCL, dicer like enzyme; Nt, nucleotide; Pre-miRNAs, precursor microRNAs; BLAST, basic local alignment search tool; GO, gene ontologyComputational; Conserved; Expressio
The “11K” gene family members sf68, sf95 and sf138 modulate transmissibility and insecticidal properties of Spodoptera frugiperda multiple nucleopolyhedrovirus
Keywords: nt، نوکلئوتید; AcMNPV, Autographa californica multiple nucleopolyhedrovirus; BmNPV, Bombyx mori nucleopolyhedrovirus; H. virescens, Heliothis virescens; LC50, lethal concentration 50%; MTD, mean time to death; nt, nucleotide; OB, occlusion body; ODV, occlusion derived v
Expanding the tool box for genetic manipulation of Trypanosoma cruzi
Keywords: nt، نوکلئوتید; SL, splice leader; nt, nucleotide; HR, homologous recombination; SM, selectable marker; GOI, gene of interest; TetR, tetracycline repressor; DHFR, dihydrofolate reductase; DDD, dihydrofolate reductase destabilization domain; ddFKBP, destabilization domain
Genome-wide identification of microRNAs associated with taproot development in radish (Raphanus sativus L.)
Keywords: nt، نوکلئوتید; miRNA, microRNA; RISC, RNA-induced silencing complex; nt, nucleotide; MFE, minimum free energy; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; qRT-PCR, quantitative real-time PCRMicroRNA; Raphanus sativus L; Taproot development
Analysis of splice variants for the C. elegans orthologue of human neuroligin reveals a developmentally regulated transcript
Keywords: nt، نوکلئوتید; ASD, autism spectrum disorders; SS, splice site; SL, splice leader; SH3, Src-Homology 3; EGF, epidermal growth factor; LNS, laminin/neurexin/sex-hormone-binding; nt, nucleotide; aa, amino acidNeuroligin; Neurexin; Splicing; Development; Synapse; C. elegan
Peroxisome proliferator-activated receptor gamma (PPARγ) in yellow catfish Pelteobagrus fulvidraco: Molecular characterization, mRNA expression and transcriptional regulation by insulin in vivo and in vitro
Keywords: nt، نوکلئوتید; aa, amino acid; DBD, DNA-binding domain; LBD, ligand-binding domain; NJ, neighbor-joining; nt, nucleotide; ORF, open reading frame; PPAR, peroxisome proliferator-activated receptor; RACE, rapid amplification of cDNA ends; SEM, standard errors of means; UT
Position of premature termination codons determines susceptibility of hERG mutations to nonsense-mediated mRNA decay in long QT syndrome
Keywords: nt، نوکلئوتید; CHX, cycloheximide; EJC, exon junction complex; hERG, human ether-a-go-go-related gene; HPH, hygromycin B phosphotransferase; LQT2, long QT syndrome type 2; MO, morpholino oligonucleotide; NMD, nonsense-mediated mRNA decay; nt, nucleotide; PTC, premature
Different activities of the conserved lysine residues in the double-stranded RNA binding domains of RNA helicase A in vitro and in the cell
Keywords: nt، نوکلئوتید; HIV-1, human immunodeficiency virus 1; UTR, untranslated region; RHA, RNA helicase A; dsRNA, double-stranded RNA; ssRNA, single-stranded RNA; NTP, nucleotide triphosphate; nt, nucleotide; dsRBD, double-stranded RNA binding domain; HA2, helicase associated
Characterization of the response to ecdysteroid of a novel cuticle protein R&R gene in the honey bee, Apis cerana cerana
Keywords: nt، نوکلئوتید; CPR, cuticle protein R&R; 20E, 20-Hydroxyecdysone; aa, amino acid (s); nt, nucleotide; ORF, open reading frame; cDNA, DNA complementary to DNA; mRNA, messenger ribonucleic acid; RACE, rapid amplification of cDNA ends; RT-PCR, reverse transcription polymer
The alpaca agouti gene: Genomic locus, transcripts and causative mutations of eumelanic and pheomelanic coat color
Keywords: nt، نوکلئوتید; RNA, ribonucleic acid; DNA, deoxyribonucleic acid; mRNA, messenger RNA; bp, base pair; kb, kilobase; nt, nucleotide; cDNA, complementary DNA; PCR, polymerase chain reaction; RT, reverse transcription; BLAST, Basic Local Alignment Search Tool; NCBI, Nation
5′-UTR mediated translational control of splicing assembly factor RNP-4F expression during development of the Drosophila central nervous system
Keywords: nt، نوکلئوتید; bp, base pair; dADAR, Drosophila adenosine deaminase acting on RNA; cDNA, DNA complementary to RNA; CNS, central nervous system; GFP, green fluorescent protein; IRES, internal ribosomal entry site; mRNA, messenger RNA; nt, nucleotide; PCR, polymerase chai
miR-27a suppresses triglyceride accumulation and affects gene mRNA expression associated with fat metabolism in dairy goat mammary gland epithelial cells
Keywords: nt، نوکلئوتید; miRNA, microRNA; RNA, messenger RNA; MOI, multiplicity of infection; Ad, adenoviral; Ad-miR-27a, recombinant adenoviral-miR-27a; nt, nucleotide; cDNA, DNA complementary to RNA; DMEM, Dulbecco's modified Eagle medium; EGF, epidermal growth factor; UTR, un-
Control of RNA processing by a large non-coding RNA over-expressed in carcinomas
Keywords: nt، نوکلئوتید; ASO, antisense oligo; ENG, Endoglin; ENGalt, alternatively spliced Endoglin; hnRNP, heterogeneous nuclear ribonucleoprotein; IPA, ingenuity pathway analysis; ncRNA, non-coding RNA; nt, nucleotide; SR protein, serine/arginine-rich proteinHepcarcin; Σ RNA/M
Quantification of complex precore mutations of hepatitis B virus by SimpleProbe real time PCR and dual melting analysis
Keywords: nt، نوکلئوتید; HBV, hepatitis B virus; HBeAg, hepatitis B e antigen; HCC, hepatocellular carcinoma; LNA, locked nucleic acid; nt, nucleotide; TVL, total viral load; WT, wild typeMutation; HBV; Precore; Quantification; SimpleProbe; qPCR
Alteration of microRNA expression in the process of mouse brain growth
Keywords: nt، نوکلئوتید; RNA, ribonucleic acid; miRNA, microRNA; DNA, deoxyribonucleic acid; RISC, RNA-induced silencing complex; mRNA, messenger RNA; RNAi, RNA interference; siRNA, small interfering RNA; piRNA, Piwi-interacting RNA; cDNA, complementary DNA; nt, nucleotide; PCR,
Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in Populus
Keywords: nt، نوکلئوتید; OMT, O-methyltransferase; COMT, caffeic acid O-methyltransferase; nt, nucleotide; aa, amino acid; RT-PCR, reverse transcriptase polymerase chain reaction; CCoAOMT, caffeoyl CoA-methyltransferase; FAH, ferulic acid hydroxylase; SAM, S-adenosyl-l-methionine
Novel genes specifically expressed during the development of the male thalli and antheridia in the dioecious liverwort Pellia endiviifolia
Keywords: nt، نوکلئوتید; Aa, amino acid; aars, amino acid residues; bp, base pair; DP, difference product; HMG-box, High Mobility Group box domain; kb, kilobase; nt, nucleotide; Rab, Ras related GTP-binding protein; RACE, rapid amplification of cDNA ends; RDA-cDNA, representation
Long noncoding RNAs in cell biology
Keywords: nt، نوکلئوتید; eIF4A, eukaryotic initiation factor 4A; kb, kilobase; lncRNAs, long noncoding RNAs; miRNAs, microRNAs; nt, nucleotide; piRNAs, piwi-associated RNAs; sdRNAs, snoRNA-derived small RNAs; siRNAs, small interfering RNAs; snRNAs, small nuclear/spliceosomal RNAs
Viral load and genotypes of noroviruses in symptomatic and asymptomatic children in Southeastern Brazil
Keywords: nt، نوکلئوتید; NoVs, noroviruses; ER, emergency room; nt, nucleotide; cDNA, complementary DNA; ORF, open reading frameNoroviruses; Symptomatic and asymptomatic children; Genogroup; Genotype; Viral load
Poly(A) tail affects equilibrium and thermodynamic behavior of tobacco etch virus mRNA with translation initiation factors eIF4F, eIF4B and PABP
Keywords: nt، نوکلئوتید; m7G, 7-methyl-guanosine; eIF, eukaryotic initiation factor; PABP, poly(A)-binding protein; TEV, tobacco etch virus; IRES, internal ribosomal entry site; nt, nucleotide; PK, pseudoknot; PMSF, phenylmethylsulfonyl fluoride; DEAE, diethylaminoethyl; UTR, unt
The first complete genome sequence of a non-chicken aviadenovirus, proposed to be turkey adenovirus 1
Keywords: nt، نوکلئوتید; aa, amino acid; AdV, adenovirus; DBP, DNA binding protein; E1, early region 1; E4, early region 4; FAdV, fowl adenovirus; ITR, inverted terminal repeat; MLP, major late promoter; nt, nucleotide; ORF, open reading frame; pTP, terminal protein precursor; TA
Conserved helicase domain of human RecQ4 is required for strand annealing-independent DNA unwinding
Keywords: nt، نوکلئوتید; APE1, apurinic endonuclease 1; BER, base excision repair; BLM, Bloom syndrome protein; bp, base pair; FEN1, flap endonuclease 1; NER, nucleotide excision repair; nt, nucleotide; RPA, replication protein A; RTS, Rothmund–Thomson syndrome; SFII, superfamily
A new β-chain haemoglobin variant with increased oxygen affinity: Hb Roma [β115(g17)Ala → Val]
Keywords: nt، نوکلئوتید; Hb, hemoglobin; RP-HPLC, reversed phase-HPLC; nt, nucleotide; ESI, electrospray ionization; TFA, trifluoroacetic acid; MS/MS, Tandem Mass; XIC, extracted ion current; BPG, 2,3-bisphosphoglycerate; P50, partial pressure of O2 required to saturate 50% of th
Small RNA-mediated gene silencing pathways in C. elegans
Keywords: nt، نوکلئوتید; 3′UTR, 3′ untranslated region; C. elegans, Caenorhabditis elegans; dsRNA, double-stranded RNA; E. coli, Escherichia coli; miRISC, microRNA-induced silencing complex; miRNA, microRNA; miRNP, microribonucleoprotein; nt, nucleotide; piRNA, Piwi-interacting R
Characterization and localization of metal-responsive-element-binding transcription factors from tilapia
Keywords: nt، نوکلئوتید; aa, amino acid; AP-1, activator protein-1; bp, base-pair; DEPC, diethyl pyrocarbonate; ddH2O, double and distilled water; MT, metallothionein; MRE, metal-responsive element; MTF, MRE-binding transcription factor; nt, nucleotide; ORF, open reading frame; U
RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti
Keywords: nt، نوکلئوتید; rRNA, ribosomal RNA; rDNA, rRNA gene; RNase, ribonuclease; nt, nucleotide; rrn, ribosomal RNA operonRibonuclease; RNase J; 5′-End; 23S rRNA; 16S rRNA; Small RNA
Molecular analysis of an oyster-related norovirus outbreak
Keywords: nt، نوکلئوتید; NoV, norovirus; G, genogroup; GI.1, genotype I.1; MPN, most probable number; RT-PCR, reverse transcriptase-polymerase chain reaction; RdRp, RNA-dependent RNA-polymerase; nt, nucleotide; kb, kilobase; ORF, open reading frameNorovirus; Genome stability; Oys
Violations of the 12/23 rule at the mouse immunoglobulin kappa locus, including Vκ-Vκ rearrangement
Keywords: nt، نوکلئوتید; RSS, Recombination signal sequence; NT, Nucleotide; 12-RSS and 23-RSS, RSS with 12 or 23 nt spacer; IRS, Recombination sequence located in the Jκ-Cκ intronB cells; Antibodies; Gene rearrangement; Molecular biology; RAG; V(D)J Recombination
Sequence analysis of rice rubi3 promoter gene expression cassettes for improved transgene expression
Keywords: nt، نوکلئوتید; aa, amino acid; GUS, β-glucuronidase; IME, intron-mediated enhancement of gene expression; LUC, luciferase; MU, methylumbelliferone; MUG, 4-methylumbelliferyl-β-d-glucuronide; NOS, nopaline synthase; nt, nucleotide; UTR, untranslated region; X-Gluc, 5-bro
Reduction of gene expression by a hairpin-loop structured oligodeoxynucleotide: Alternative to siRNA and antisense
Keywords: nt، نوکلئوتید; as, antisense; ODN, hairpin-loop structured oligodeoxynucleotide; siRNA, small interfering RNA; PPT, polypurine tract; RNase H, ribonuclease H; RT, reverse transcriptase; nt, nucleotide; EGFP, enhanced green fluorescent protein; RT-PCR, reverse transcript
Conservation of selection on matK following an ancient loss of its flanking intron
Keywords: nt، نوکلئوتید; IEP, intron-encoded protein; ORF, open reading frame; CTAB, Cetyl trimethylammonium bromide; nt, nucleotide; RT, reverse-transcriptase; mya, million years agoGroup II intron; Secondary structure; trnK; Intron-encoded protein; Fern
Novel interferon delta genes in mammals: Cloning of one gene from the sheep, two genes expressed by the horse conceptus and discovery of related sequences in several taxa by genomic database screening
Keywords: nt، نوکلئوتید; IFN, interferon; ORF, open reading frame; aa, amino-acid; bp, base pair; nt, nucleotide; FCS, fetal calf serum; BAC, bacterial artificial chromosome; VSV, vesicular stomatitis virus; RPA, ribonuclease protection assay; SINE, small interspersed repetitive
Inhibition of Autographa californica nucleopolyhedrovirus (AcNPV) polyhedrin gene expression by DNAzyme knockout of its serine/threonine kinase (pk1) gene
Keywords: nt، نوکلئوتید; bp, base pairs; DZ, DNAzyme; FITC, tetra-fluoro isothiocynate; GFP, green fluorescent protein; IDV, integrated density value; nt, nucleotide; ORF, open reading frame; mDZ, mutant DNAzyme; p.i., post infection; SDS, sodium dodecyl sulphateAutographa califo
Effects of poly(A)-binding protein on the interactions of translation initiation factor eIF4F and eIF4F·4B with internal ribosome entry site (IRES) of tobacco etch virus RNA
Keywords: nt، نوکلئوتید; m7G, 7-methyl-guanosine; eIF, eukaryotic initiation factor; PABP, poly(A)-binding protein; TEV, tobacco etch virus; IRES, internal ribosomal entry site; nt, nucleotide; PK, pseudoknot; PMSF, phenylmethylsulfonyl fluoride; DEAE, diethylaminoethyleIF's; IRE
Characterization of a novel vasopressin/oxytocin superfamily peptide and its receptor from an ascidian, Ciona intestinalis
Keywords: nt، نوکلئوتید; Ci-VP, Ciona vasopressin-related peptide; Ci-VP-R, Ci-VP receptor; GnRH, gonadotropin-releasing hormone; GPCR, G protein-coupled receptor; nt, nucleotide; OT, oxytocin; VP, vasopressinVasopressin; Oxytocin; Ascidian; Ciona intestinalis; GPCR; Neurophysin
Identification and characterization of Rhox13, a novel X-linked mouse homeobox gene
Keywords: nt، نوکلئوتید; dpp, days post partum; dpc, days post coitum; Rhox, reproductive homeobox; kDa, kilodalton; bp, base pair; nt, nucleotide; KLH, keyhole limpet hemocyanin; HRP, horseradish peroxidase; MWCO, molecular weight cutoff; TEV, tobacco etch virus; MBP, maltose bi