Keywords: c-di-GMP; 3â²*5â²-cyclic-di-guanosine monophosphate; c-di-AMP; 3â²*5â²-cyclic-di-Adenosine monophosphate; 3â²*3â² c-GAMP; 3â²*3â² cyclic guanosine monophosphate adenosine monophosphate; 2â²*3â²-c-GAMP; 2â²*3â² cyclic guanosine monophosphate ad
مقالات ISI (ترجمه نشده)
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Keywords: Ribozyme; Riboswitch; glmS; Posttranscriptional regulation; RNA structure and function;
Keywords: Antibiotic resistance; Aminoglycoside; Riboswitch; Antibiotic sensing RNA; Induction of antibiotic resistance; Integron;
Keywords: Riboswitch; Ribozyme; Metabolite; FMN; TPP; Glucosamin-6-phosphate; Lysine; Adenine; Guanine
Keywords: c-Di-GMP; Fluorescent sensor; RNA-based sensor; Riboswitch; Spinach RNA
Canonical translation-modulating OFF-riboswitches with a single aptamer binding to a small molecule that function in a higher eukaryotic cell-free expression system
Keywords: Riboswitch; Aptamer; Small ligand; Eukaryotic cell-free translation; Wheat germ extract;
Aptamers in Bordeaux 2017: An exceptional “millésime”
Keywords: Aptamer; Oligonucleotide; Riboswitch; Biosensor; Diagnostic; Pre-clinical and clinical;
Covalent and non-covalent binding of platinated vitamin B12-derivatives to a B12 responsive riboswitch
Keywords: Vitamin B12; Coenzyme B12; Cisplatin; RNA; Riboswitch;
Comparative genomic analysis of fungal TPP-riboswitches
Keywords: Riboswitch; Fungi; Thiamin; TPP; Regulation; Alternative; Splicing;
Efficient computation of co-transcriptional RNA-ligand interaction dynamics
Keywords: RNA-ligand interaction; RNA dynamics; Co-transcriptional folding; Energy landscape; Riboswitch;
Sensitive and specific detection of ligands using engineered riboswitches
Keywords: Riboswitch; Biosensor; Specificity; Sensitivity; In vitro; Selection;
Engineering riboswitch in L. major: From prediction to conceptualization
Keywords: Riboswitch; Theophylline; L. major; Post-transcription; Infectious disease;
Purine analogs targeting the guanine riboswitch as potential antibiotics against Clostridioides difficile
Keywords: Antibiotics; Clostridium difficile; Clostridioides difficile; Riboswitch; Guanine;
In silico design of ligand triggered RNA switches
Keywords: UTR; untranslated region; mRNA; messenger RNA; SELEX; Systematic Evolution of Ligands by EXponential enrichment; MFE; minimum free energy; RBS; Ribosome Binding Site; Inverse folding; Multi state design; RNA design; Riboswitch; Objective function; RNA kin
Screening and selection of artificial riboswitches
Keywords: Aptamer; Riboswitch; In vivo selection;
Synthesis and evaluation of c-di-4â²-thioAMP as an artificial ligand for c-di-AMP riboswitch
Keywords: c-di-AMP; 4â²-Thioadenosine; 4â²-ThioRNA; Riboswitch; In-line probing;
TPP riboswitch characterization in Alishewanella tabrizica and Alishewanella aestuarii and comparison with other TPP riboswitches
Keywords: Alishewanella tabrizica; Thiamine pyrophosphate; Riboswitch; In-line probing; SPR;
Non-coding RNAs as antibiotic targets
Keywords: Antibiotic; Non-coding RNA; Ribosome; tRNA; Riboswitch;
Search for 5â²-leader regulatory RNA structures based on gene annotation aided by the RiboGap database
Keywords: ncRNA; Bioinformatics; GraphClust; Infernal; Rfam; RNA secondary structure; Riboswitch; Methyltransferase; TRAP; CsrA; RsmA;
In vitro evolution of coenzyme-independent variants from the glmS ribozyme structural scaffold
Keywords: APM; N-acryloylaminophenylmercuric acetate; dNTPs; deoxyribonucleotide triphosphates; DTT; dithiothreitol; GlcN6P; glucosamine-6-phosphate; glmSWT; wild-type glmS ribozyme; 6SGMP; 6-thioguanosine monophosphate; glmSAAA; triple adenosine-mutant glmS ribozy
Identification of RNA aptamers with riboswitching properties
Keywords: Aptamer; Riboswitch; Genetic engineering; SELEX; Screening system
An in vitro selection for small molecule induced switching RNA molecules
Keywords: SELEX; Stand displacement; In vitro selection; Riboswitch;
Folding of SAM-II riboswitch explored by replica-exchange molecular dynamics simulation
Keywords: Riboswitch; Bacteria; REMD; Folding dynamics;
A label-free and self-assembled electrochemical biosensor for highly sensitive detection of cyclic diguanylate monophosphate (c-di-GMP) based on RNA riboswitch
Keywords: Cyclic diguanylate monophosphate (c-di-GMP); Riboswitch; Biosensor; Label-free; Self-assembled;
A synthetic suicide riboswitch for the high-throughput screening of metabolite production in Saccharomyces cerevisiae
Keywords: Riboswitch; glmS ribozyme; Evolutionary engineering; Random mutagenesis;
Control of alphavirus-based gene expression using engineered riboswitches
Keywords: Alphavirus; Replicon; Riboswitch; Aptamer; Venezuelan equine encephalitis virus;
A riboswitch sensor to determine vitamin B12 in fermented foods
Keywords: Riboswitch; Green fluorescence protein; Cobalamin;
Riboswitches in regulation of Rho-dependent transcription termination
Keywords: Riboswitch; Rho; Transcription termination;
Dynamics of riboswitches: Molecular simulations
Keywords: Riboswitch; Molecular dynamics simulation; RNA;
The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand
Keywords: tRNA; Riboswitch; Transcription attenuation; Gene regulation; RNA structure;
Common themes and differences in SAM recognition among SAM riboswitches
Keywords: SAM; S-adenosyl-l-methionine; Riboswitch; Regulatory RNA; Antitermination; Ribosome binding site;
Computational analysis of riboswitch-based regulation
Keywords: RNA regulatory motif; Riboswitch; Regulon; Gene function; Comparative genomics; Bacteria;
Gene regulation by structured mRNA elements
Keywords: mRNA; structure; riboswitch; gene regulation
Gramicidin D enhances the antibacterial activity of fluoride
Keywords: Antibiotic; Bacillus subtilis; Fluoride reporter; Riboswitch; Polymyxin B;
The purine riboswitch as a model system for exploring RNA biology and chemistry
Keywords: Riboswitch; Purine; RNA structure; Co-transcriptional folding; Gene expression;
Fluorescence tools to investigate riboswitch structural dynamics
Keywords: Riboswitch; Fluorescence; RNA conformational change; Forster resonance energy transfer; Single-molecule FRET;
Solution NMR determination of hydrogen bonding and base pairing between the glyQS T box riboswitch Specifier domain and the anticodon loop of tRNAGly
Keywords: NOESY; nuclear Overhauser effect spectroscopy; 2D; two dimensional; HMQC; heteronuclear multiple quantum coherence; NH; imino; CW; continuous wave; SD; specifier domain; Heteronuclear; U-turn; tRNA; Transcription regulation; Riboswitch; Antitermination; D
Regulatory RNAs and target mRNA decay in prokaryotes
Keywords: Small RNA; mRNA translation; mRNA degradation; RNase E; Ribonuclease; Riboswitch;
The genetic code as expressed through relationships between mRNA structure and protein function
Keywords: RNA structure; Riboswitch; Frameshifting; IRES; Translation;
Bacterial sRNAs: Regulation in stress
Keywords: sRNA; Stress; RNA thermometer; Riboswitch; cis-Encoded; trans-Encoded; CRISPR;
Methionine biosynthesis in Agrobacterium tumefaciens: study of the first enzyme
Keywords: Methionine biosynthesis; Agrobacterium tumefaciens; Homoserine trans-succinylase; Homoserine acetyl-transferase; Heat shock gene; Riboswitch
Synthesis of spin-labeled riboswitch RNAs using convertible nucleosides and DNA-catalyzed RNA ligation
Keywords: Solid-phase synthesis; Convertible nucleoside; Spin label; RNA ligation; Deoxyribozyme; Riboswitch
Dual Posttranscriptional Regulation via a Cofactor-Responsive mRNA Leader
Keywords: SD, Shine–Dalgarno; WT, wild type; EDTA, ethylenediaminetetraacetic acidglobal regulation; translation control; molybdenum cofactor; riboswitch
Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA
Keywords: RNA secondary structure; Stochastic context-free grammars; Structural entropy; Riboswitch; Structural ambiguity
Rational construction of eukaryotic OFF-riboswitches that downregulate internal ribosome entry site-mediated translation in response to their ligands
Keywords: Riboswitch; Aptamer; Gene regulation; IRES; Biosensor
Genetically encoded RNA photoswitches as tools for the control of gene expression
Keywords: Synthetic biology; Aptamer; Riboswitch; Photoswitch; Photoisomerization;
Fluoride enhances the activity of fungicides that destabilize cell membranes
Keywords: Antifungal; Amphotericin B; Candida albicans; Riboswitch; Yeast;
Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators
Keywords: Synthetic biology; Riboswitch; Aptamer; Ribozyme; Aptazyme;
Atomic force microscope-based single-molecule force spectroscopy of RNA unfolding
Keywords: RNA; Atomic force microscopy; Single-molecule force spectroscopy; Rev-RRE; Riboswitch
Trans-acting RNAs as molecular probes for monitoring time-dependent structural change of an RNA complex adapting two structures
Keywords: RNA structure; Structural change; RNA–RNA interaction; Ribozyme; Riboswitch