Keywords: DEGs; differentially expressed genes; RPKM; reads per kilobase per million reads; GO; gene ontology; KEGG; Kyoto encyclopedia of genes and genomes; ZG; zhongguo; XY; xiangyang; PPI; protein-protein interaction; RSEM; RNA-seq by Expectation Maximization;
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Keywords: Aboriginal fiber; String; Resin; Seeds; Residues; Usewear;
Keywords: aCL; anticardiolipin; ADP; adenosine diphosphate; APOH; apolipoprotein H; APS; antiphospholipid syndrome; β2GPI; β2-glycoprotein I; DVT; deep vein thrombosis; FDR; false discovery rate; GO; gene ontology; IL; interleukin; IRAK 1; interleukin-1 receptor-
Keywords: NSCLC; non-small cell lung cancer; DEGs; differentially expressed genes; PPI; protein-protein interaction; GEO; Gene Expression Omnibus; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; DEMs; differentially expressed microRNA; DAVID; Data
Keywords: APCS; amyloid p component serum; CAF; cancer associated fibroblast; cSCC; cutaneous squamous cell carcinoma; DAPI; 4â²,6-diamidino-2-phenylindole; ECM; extracellular matrix; EMT; epithelial-mesenchymal transition; FFPE; formalin-fixed paraffin-embedded;
Keywords: α-Syn; α-synuclein; AD; Alzheimer's disease; BP; Biological Process; CAMS; Chinese Academy of Medical Sciences; CAPS; calcium-dependent activator of secretion; CC; Cellular component; CCK; Cell counting kit; DA; dopamine; DAVID; Database for annotation,
Keywords: TCM; Traditional Chinese medicine; YXST; Yangxinshi tablet; SPR; Surface plasmon resonance; PPARγ; Peroxisome proliferator-activated receptor gamma; ACE; Angiotensin-converting enzyme; MAPK; Mitogen-activated protein kinase 14; KEGG; Kyoto Encyclopedia o
Keywords: PCOS; polycystic ovary syndrome; DEGs; differentially expressed genes; PPI; protein-protein interaction; POLR1B; polymerase I subunit B; POLE3; polymerase epsilon 3, accessory subunit; POLD3; polymerase delta 3, accessory subunit; HTR2C; 5âhydroxytrypta
Keywords: ATP; adenosine triphosphate; BCAA; branched-chain amino acid; BIA; bioelectrical impedance analysis; BMI; body mass index; CSIU; Clinical Studies Infusion Unit; DAVID; Database for Annotation, Visualization and Integrated Discovery; DEP; differentially ex
Keywords: Curcumin (PubChem CID: 969516); Simvastatin (PubChem CID: 54454); CI; combination index; DMSO; dimethylsulfoxide; EtOH; ethanol; H2O; water; IPA; Ingenuity Pathway Analysis; NIGMS; National Institute of General Medical Sciences; STRING; search tool for re
Keywords: Hub nodes; Microarray data; Lung adenocarcinoma; Neural network; Network analyst; STRING; Walktrap module;
Keywords: GI; gene interaction; PP; protein-protein interaction; URL; Uniform Resource Locators; STRING; Search Tool for the Retrieval of Interacting Genes/Proteins; COGs; Cluster of Orthologous Groups; KEGG; Kyoto Encyclopedia of Genes and Genomes; MINT; Molecular
Keywords: Pax6; string; atonal; Evolution of development; Genetic redundancy; Arthropod; Ocular segment; Ocelli; Compound eye; Subfunctionalization; Neofunctionalization;
Keywords: Diabetes mellitus; Human pancreatic islets; Protein mass spectrometry; Bone marrow; Glucose stimulated insulin secretion; STRING;
Keywords: HCM; hypertrophic cardiomyopathy; PPI; protein-protein interaction; SCC; spearman correlation coefficient; RMA; robust multiarray average; MAS; micro array suite; STRING; Search Tool for the Retrieval of Interacting Genes; WID; weighted interaction dens
Keywords: Static magnetic fields; Shielded space habitat simulation; DIGE proteomics; Tomato hairy roots; Anthocyanins; Stress response; mT; milli Tesla; SMF; Static Magnetic Field; HRC; Hairy Root Culture; BLSS; Bioregenerative Life-Support Systems; ATCC; American
Keywords: PPI; protein-protein interaction; ACTA2; Actin, Alpha 2, Smooth Muscle, Aorta; ACTN1; Actinin, Alpha 1; VCL; Vinculin; CCND1; cyclin D1; MCM7; Minichromosome Maintenance Complex Component 7; TRIM29; Tripartite Motif Containing 29; UBE2C; Ubiquitin-Conjuga
Keywords: Adr; Adriamycin; miRNA; microRNA; MTT; 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide; mRNA; messenger RNA; RT-qPCR; real-time quantitative PCR; KEGG; Kyoto Encyclopedia of Genes and Genomes; PPI; protein-protein interaction; CHOL; cholest
Keywords: Hadron; String; Holography;
Keywords: String; Square; Canonical factorization; Double square; New Periodicity Lemma;
Keywords: Word; String; Repetition; Power; Repeat; Periodicity; Word exponent; Return word; Algorithm; Automaton
Keywords: Dyck path; Ballot path; String;
Keywords: Steel corrosion; EIS; Polarization; String; Acoustic emission;
Keywords: mozzarella; string; starch; xanthan;
Keywords: String; Square; Primitively rooted square; Number of distinct squares; Double square; Balanced double square; Factorizable double square; FS-double square
Keywords: String; Word; Overlapping squares; Repetition; Run; Maximal periodicity
Keywords: String; Resonator; Sensing; Inverse problem; Resonant frequency;
Keywords: cIFN; consensus interferon; EDHS; Egyptian Demographic Health Survey; FDA; Food and Drug Administration; HBV; hepatitis B virus; HCV; hepatitis C virus; IFN; interferon; IFNAR; IFN-α/β receptor; IFNGR; IFN-γ receptor; IRF9; IFN-regulatory factor 9; ISG
Keywords: String; T-duality; Double Field Theory
Keywords: ED; early disease; AD; advanced disease; TERT; telomerase reverse transcriptase; TNF; α-tumor necrosis factor alpha; GRHL3; grainy head-like 3; ASCO; American Society of Clinical Oncology; MS; mass spectrometry; REMARK; Reporting Recommendations for Tumo
Keywords: Alignment; Frequent pattern mining; String; Ordered tree; DNA
Redox regulation by reversible protein S-thiolation in Gram-positive bacteria
Keywords: Ac; acetyl; AcCys; acetyl cysteine; AhpE; membrane-associated peroxidase; AldA; aldehyde dehydrogenase A; Bca; BSH S-conjugate amidase; Brx; bacilliredoxin; BSH; bacillithiol; BshA; glycosyltransferase for GlcNAc-Mal biosynthesis; BshB; deacetylase produc
Kaluza-Klein string cosmological model in f(R, T) theory of gravity
Keywords: f(R, T) theory of gravity; Kaluza-Klein; String; Time varying deceleration parameter;
Identification of key microRNAs, transcription factors and genes associated with congenital obstructive nephropathy in a mouse model of megabladder
Keywords: CON; Congenital obstructive nephropathy; DEMs; Differentially expressed miRNAs; PPI; Protein-protein interaction; Vegfa; Vascular endothelial growth factor A; Nr4a2; Nuclear receptor subfamily 4, group A, member 2; Jdp2; Jun dimerisation protein 2; Klf6;
Computational analysis of non-synonymous single nucleotide polymorphism in the bovine cattle kappa-casein (CSN3) gene
Keywords: SNP; single nucleotide polymorphism; SIFT; Sorting Intolerant From Tolerant; PolyPhen; phenotype polymorphism; nsSNP; nonsynonymous single nucleotide polymorphism; MUSTER; MUlti-Sources ThreadER; NCBI; National Centre for Biological Information; PROVEAN;
Quantitative proteomics and biochemical analyses reveal the role of endoplasmin in the regulation of the expression and secretion of A Disintegrin And Metalloproteinase 12
Keywords: ADAM12S; Endoplasmin (GRP94); Label-free quantification; Secretion; Spectral counting; Docking; ADAM12S; the short form of a disintegrin and metalloproteinase 12; CANX; calnexin; CPORT; Consensus Prediction Of interface Residues in Transient complexes; Dl
Identification of differentially expressed proteins in rats with spinal cord injury during the transitional phase using an iTRAQ-based quantitative analysis
Keywords: SCI; Spinal cord injury; CNS; central nervous system; DEPs; differentially expressed proteins; iTRAQ; isobaric tagging for relative and absolute protein quantification; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; PPI; protein-protein
Bioinformatics-based interaction analysis of miR-92a-3p and key genes in tamoxifen-resistant breast cancer cells
Keywords: ER; estrogen receptor; miRNAs; microRNAs; QRT-PCR; quantitative real-time polymerase chain reaction; Ct; threshold cycle; DEGs; differentially expressed genes; DEMs; differentially expressed miRNAs; PPI; protein-protein interaction; GEO; Gene Expression O
Modelling vibrating nano-strings by lattice, finite difference and Eringen's nonlocal models
Keywords: Elastic boundary conditions; String; Vibration; Finite difference; Lattice model; Eringen's nonlocal string; Small length scale coefficient;
An in silico study: Novel targets for potential drug and vaccine design against drug resistant H. pylori
Keywords: H. pylori; Common proteins; Metabolic pathways; Network analysis; Druggability; Therapeutic targets; CAI; Codon adaptation index; CELLO; subCELlular LOcalization predictor; COGdb; Cluster of orthologous groups database; CP; chokepoint proteins; DEG; Datab
The Chinese herbal formula Zhibai Dihuang Granule treat Yin-deficiency-heat syndrome rats by regulating the immune responses
Keywords: ZDG; Zhibai Dihuang Granule; YDH; Yin-deficiency-heat; TCM; traditional Chinese medicine; HPLC; High Performance Liquid Chromatography; ELISA; enzyme-linked immunosorbent assay; Azgp1; Zinc-alpha-2-glycoprotein; Crp; C-reactive protein; Plg; Plasminogen;
A survey of string orderings and their application to the Burrows-Wheeler transform
Keywords: Algorithm; Bijective; Binary alphabet; Block order; Burrows-Wheeler transform; B-word; Data clustering; Degenerate; GB-word; Generic alphabet; Generic block order; Indeterminate Lyndon word; Inverse transform; Lexicographic order; Linear; Lyndon word; S
PDIM and SL1 accumulation in Mycobacterium tuberculosis is associated with mce4A expression
Keywords: DNA/RNA; Deoxyribose/ribose Nucleic Acid; MCC; Methylcitrate Cycle; mce; Mammalian Cell Entry; MM; Minimal Medium; MM-CoA; Methylmalonyl-CoA; MMP; Methylmalonyl Pathway; M. tuberculosis; Mycobacterium tuberculosis; PDIM; Phthiocerol Dimycocerosate; RNase;
Investigation of candidate long noncoding RNAs and messenger RNAs in the immediate phase of spinal cord injury based on gene expression profiles
Keywords: SCI; spinal cord injury; lncRNAs; long noncoding RNAs; mRNAs; messenger RNAs; DE lncRNAs; differentially expressed lncRNAs; DE mRNAs; differentially expressed mRNAs; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; PPI; protein-protein in
Identification of Skt11-regulated genes in chondrocytes by integrated bioinformatics analysis
Keywords: STK11; Serine/threonine kinase 11; DEGs; differentially expressed genes; TAC; Transcriptome Analysis Console; PPI; protein-protein interaction PPI; GO; Gene Ontology; LIP1; STK11-interacting protein 1; STRING; The Retrieval of Interacting Genes; Fgf2; Fib
Cross-regulatory network in Pseudomonas aeruginosa biofilm genes and TiO2 anatase induced molecular perturbations in key proteins unraveled by a systems biology approach
Keywords: ATP; Adenoside Tri Phosphate; DAVID; Database for Annotation, Visualization and Integrated Discovery; FDR; False Discovery Rate; GDP; Guanoside DiPhosphate; KEGG; Kyoto Encyclopedia of Genes and Genomes; MCODE; Cytoscape plugin to find clusters in a netwo
The orphan nuclear receptor TLX regulates hippocampal transcriptome changes induced by IL-1β
Keywords: TLX; orphan nuclear receptor tailless homolog; IL-1β; interleukin-1 beta; TNF; tumor necrosis factor; NPCs; neural progenitor cells; DG; dentate gyrus; LTP; long term potentiation; P; post-natal day; KO; knockout; WT; wildtype; PBS; phosphate buffered sa
How to use and integrate bioinformatics tools to compare proteomic data from distinct conditions? A tutorial using the pathological similarities between Aortic Valve Stenosis and Coronary Artery Disease as a case-study
Keywords: Proteomics; Bioinformatics; STRING; DisGeNET; Cytoscape; ClueGO;
Role of upregulated miR-136-5p in lung adenocarcinoma: A study of 1242 samples utilizing bioinformatics analysis
Keywords: NSCLC; non small cell lung cancer; SCLC; small cell lung cancer; LUAD; lung adenocarcinoma; miRNAs; microRNAs; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; PANTHER; Protein Analysis Through Evolutionary Relationships; GEO; Gene Expres
A transcriptomic analysis of black cohosh: Actein alters cholesterol biosynthesis pathways and synergizes with simvastatin
Keywords: Actein; Black cohosh; Microarrays; Ranunculaceae; Simvastatin; Triterpene glycoside; CI; Combination Index; CYP; Cytochrome P450; DMSO; dimethylsulfoxide; DMEM; Dulbecco's Modified Eagle's medium; ERK; Extracellular signal related kinase; EtOH; ethanol; F