Keywords: بیوانفورماتیک ساختاری; Principal component analysis; Random projection; Dimensionality reduction; Data clustering; Protein structure; Structural bioinformatics;
مقالات ISI بیوانفورماتیک ساختاری (ترجمه نشده)
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Keywords: بیوانفورماتیک ساختاری; Affinity chromatography; Formate dehydrogenase; Ligand design; Structural bioinformatics; Site-directed mutagenesis;
Keywords: بیوانفورماتیک ساختاری; Metaheuristics; Hybrid evolutionary algorithms; Multimodal optimization; Structural Bioinformatics; PSP problem;
Keywords: بیوانفورماتیک ساختاری; Virus large envelope protein; Rational peptide design; Structural bioinformatics; Pediatric receptor;
Proteome scale identification, classification and structural analysis of iron-binding proteins in bread wheat
Keywords: بیوانفورماتیک ساختاری; Coordination geometries; Ferric and ferrous ions; Iron-binding proteins; Structural bioinformatics; Triticum aestivum;
Keywords: بیوانفورماتیک ساختاری; structural bioinformatics; blood coagulation; cancer; factor VIII; factor V; neuropilin
Keywords: بیوانفورماتیک ساختاری; Function-unknown protein; Principle component analysis; Side effect; Structural bioinformatics; Three-dimensional structure
Keywords: بیوانفورماتیک ساختاری; Three-dimensional protein structure prediction; Structural bioinformatics; Ab initio methods; Knowledge-based methods
A validation strategy for in silico generated aptamers
Keywords: بیوانفورماتیک ساختاری; 3D aptamer structure computation; Structural bioinformatics; Chemical affinity; Electrical properties;
RNAComposer and RNA 3D structure prediction for nanotechnology
Keywords: بیوانفورماتیک ساختاری; RNA; RNA 3D structure; RNA structure prediction; Structural bioinformatics; RNA nanotechnology;
Structural modeling of G-protein coupled receptors: An overview on automatic web-servers
Keywords: بیوانفورماتیک ساختاری; Homology modeling; G Protein-coupled receptor; Structural bioinformatics; Database; Web server;
A computational study of ion current modulation in hVDAC3 induced by disulfide bonds
Keywords: بیوانفورماتیک ساختاری; Voltage dependent anion channels; Cysteine oxidation states; Molecular dynamics; Structural bioinformatics; Neural networks; Conductance;
A whole genome bioinformatic approach to determine potential latent phase specific targets in Mycobacterium tuberculosis
Keywords: بیوانفورماتیک ساختاری; Mycobacterium tuberculosis; Reactive oxygen and nitrogen species (RNOS); Latent phase; Structural bioinformatics; Mtb; Mycobacterium tuberculosis; RNOS; Reactive oxygen and nitrogen species; DBD; Drug Binding Domains; RPWC; Remaining proteins with crystal
Evaluation of the steric impact of flavin adenine dinucleotide in Drosophila melanogaster cryptochrome function
Keywords: بیوانفورماتیک ساختاری; Molecular dynamics; Sequence analysis; Structural bioinformatics; Cryptochrome; Drosophila melanogaster; Flavin adenine dinucleotide;
Relevance of rhodopsin studies for GPCR activation
Keywords: بیوانفورماتیک ساختاری; Rhodopsin; G protein-coupled receptors; GPCR activation; Structural biology; Structural bioinformatics;
Computational modeling of protein-RNA complex structures
Keywords: بیوانفورماتیک ساختاری; RNA; Protein; RNP; Protein-RNA binding; Macromolecular complex; Computational docking; Structural bioinformatics;
Probing the protein space for extending the detection of weak homology folds
Keywords: بیوانفورماتیک ساختاری; Protein motif; Structure prediction; Protein fold; Remote homology; Structural bioinformatics
A cluster-DEE-based strategy to empower protein design
Keywords: بیوانفورماتیک ساختاری; Integrated intelligent methods; Protein design; Structural bioinformatics; Clustering algorithms; Boolean Satisfiability problem; Dead-End-Elimination
A molecular dynamics and knowledge-based computational strategy to predict native-like structures of polypeptides
Keywords: بیوانفورماتیک ساختاری; Structural bioinformatics; Molecular dynamics simulation; Protein structure prediction; Ab initio structure prediction
Computational methods for prediction of protein-RNA interactions
Keywords: بیوانفورماتیک ساختاری; AUC; area under receiver operating characteristic curve; cryo-EM; cryo-electron microscopy; DARS-RNP; decoys as reference state based potential to assess structure of protein-RNA complexes; FPR; false positive rate (1 - specificity); HMM; Hidden Marko
Structural in silico analysis of cross-genotype-reactivity among naturally occurring HCV NS3-1073-variants in the context of HLA-A*02:01 allele
Keywords: بیوانفورماتیک ساختاری; HCV, Hepatitis C Virus; MHC, major histocompatibility complex; pMHC, MHC-peptide complex; HLA, human leukocyte antigen; TCR, T-cell receptor; PCA, principal component analysisCross-reactivity; Immunogenicity; Structural bioinformatics; Hepatitis C virus
iWRAP: An Interface Threading Approach with Application to Prediction of Cancer-Related Protein–Protein Interactions
Keywords: بیوانفورماتیک ساختاری; structural bioinformatics; protein–protein interactions; threading; cancer; genome annotationPPIs, protein–protein interactions; LP, linear programming approach; SS, secondary structure; iracc, interacting residue accuracy; RPS, ribosomal protein associat
Adding structural information to the von Hippel-Lindau (VHL) tumor suppressor interaction network
Keywords: بیوانفورماتیک ساختاری; Von Hippel-Lindau; Hypoxia inducible factor; Structural bioinformatics; Linear motif; Protein interaction;
Structural bioinformatics analysis of free cysteines in protein environments
Keywords: بیوانفورماتیک ساختاری; Ã
; RMSD from the crystal structure of the complex; aa; amino acid; C; cysteine; SH; free cysteine form; SS; disulphide from; HSSP; a database of homology-derived secondary structure of proteins; PDB; Protein Data Bank; PERL; Practical Extraction and Repo
Structural Analysis of Metal Sites in Proteins: Non-heme Iron Sites as a Case Study
Keywords: بیوانفورماتیک ساختاری; metalloprotein; metal; iron; protein structure; structural bioinformatics
Structural insight into protein T1, the non-allergenic member of the Bet v 1 allergen family-An in silico analysis
Keywords: بیوانفورماتیک ساختاری; Bet v 1; Protein T1; Structural bioinformatics; Allergenicity; Cross-reactivity;
Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors
Keywords: بیوانفورماتیک ساختاری; SARS coronavirus; Spike protein; ACE2; Receptor-binding specificity; Structural bioinformatics
Analogue inhibitors by modifying oseltamivir based on the crystal neuraminidase structure for treating drug-resistant H5N1 virus
Keywords: بیوانفورماتیک ساختاری; H5N1; Avian influenza; Drug-resistance; Neuraminidase; Grid score; Amber score; Structural bioinformatics; 150-loop
Interfacial activation of snake venom phospholipases A2 (svPLA2) probed by molecular dynamics simulations
Keywords: بیوانفورماتیک ساختاری; Molecular dynamics; Molecular modeling; Structural bioinformatics; svPLA2;
Insights from modeling the 3D structure of H5N1 influenza virus neuraminidase and its binding interactions with ligands
Keywords: بیوانفورماتیک ساختاری; H5N1; Avian influenza; Bird flu; Drug-resistance; Neuraminidase; DANA; Structure–active relationship; Structural bioinformatics; Hydrophilic pocket; Lipophilic pocket
Quasi-symmetry in the Cryo-EM Structure of EmrE Provides the Key to Modeling its Transmembrane Domain
Keywords: بیوانفورماتیک ساختاری; dual topology; protein structure prediction; structural bioinformatics; cryo-EM; mechanism of actionSMR, small multidrug resistance; TM, transmembrane; cryo-EM, cryo-electron microscopy; TPP+, tetraphenylphosphonium
Theoretical studies of Alzheimer's disease drug candidate 3-[(2,4-dimethoxy)benzylidene]-anabaseine (GTS-21) and its derivatives
Keywords: بیوانفورماتیک ساختاری; Alzheimer's Disease; GTS-21; α7 Nicotinic acetylcholine receptor; Molecular modeling; Docking; Structural bioinformatics;
The automatic detection of known β-propeller structural motifs from protein tertiary structure
Keywords: بیوانفورماتیک ساختاری; Protein structure analysis; Structural motifs; β-Propellers; Automatic detection method; Structural bioinformatics;