کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
443257 | 692696 | 2016 | 15 صفحه PDF | دانلود رایگان |

• Olive TLP catalytic acidic cleft was comparatively analyzed by structural-based modeling.
• Substrate docking identified E84-D107 pair as key residues involved in the 1,3-β-glucanase activity.
• Two specific T-cell (T4 and T7) epitopes, and two commonly shared IgE-binding (IgE1 and IgE2) epitopes identified in Ole e 13 may be responsible for both, specific reactivity and cross-allergenicity to other food and pollen allergen proteins.
• Identification of Ole e 13 epitopes will help designing strategies to improve food allergy diagnosis and immunotherapy.
Thaumatin-like proteins (TLPs) are enzymes with important functions in pathogens defense and in the response to biotic and abiotic stresses. Last identified olive allergen (Ole e 13) is a TLP, which may also importantly contribute to food allergy and cross-allergenicity to pollen allergen proteins. The goals of this study are the characterization of the structural-functionality of Ole e 13 with a focus in its catalytic mechanism, and its molecular allergenicity by extensive analysis using different molecular computer-aided approaches covering a) functional-regulatory motifs, b) comparative study of linear sequence, 2-D and 3D structural homology modeling, c) molecular docking with two different β-D-glucans, d) conservational and evolutionary analysis, e) catalytic mechanism modeling, and f) IgE-binding, B- and T-cell epitopes identification and comparison to other allergenic TLPs.Sequence comparison, structure-based features, and phylogenetic analysis identified Ole e 13 as a thaumatin-like protein. 3D structural characterization revealed a conserved overall folding among plants TLPs, with mayor differences in the acidic (catalytic) cleft. Molecular docking analysis using two β-(1,3)-glucans allowed to identify fundamental residues involved in the endo-1,3-β-glucanase activity, and defining E84 as one of the conserved residues of the TLPs responsible of the nucleophilic attack to initiate the enzymatic reaction and D107 as proton donor, thus proposing a catalytic mechanism for Ole e 13. Identification of IgE-binding, B- and T-cell epitopes may help designing strategies to improve diagnosis and immunotherapy to food allergy and cross-allergenic pollen TLPs.
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Journal: Journal of Molecular Graphics and Modelling - Volume 66, May 2016, Pages 26–40