Biogeochemical processes in a clay formation in situ experiment: Part C – Organic contamination and leaching data

Data interpretation of the Porewater Chemistry (PC) experiment at the Mont Terri Rock Laboratory has led to unexpected observations of anaerobic microbial processes which caused important geochemical perturbations of the Opalinus Clay water in the borehole. The increases of acetate to 146 mg C/L, of DIC to 109 mg C/L and of CH4 to 0.5 mg C/L were unexpected and could not be explained without the presence of a C source in the system. The organic C fuelling the observed microbial activity was until then unknown. Leaching tests were performed on several polymers used for the fabrication of the PC equipment to identify the source of organic matter (OM). Polyethylene (PE) appears to be very inert and does not release detectable concentrations of dissolved organic C (DOC) (<1 ppb) into the water. Polyurethane (PU) leaches out a dozen different organic compounds accounting for only 13 μg DOC/g PU. Under the conditions of the leaching tests, 1 g of polyamide (PA, Nylon) also releases ∼512 μg of the plasticizer N-Butyl-Benzene-Sulfonamide (NBBS). Soaking tests with polyethylene samples immersed in acetone under conditions similar to those used to remove grease spots on the porous PE filter prior to installation showed that acetone could have been trapped in the PE filter, corresponding to an initial concentration of 1.5 g acetone/L of water. However, the accumulated amount of organic C taken into account from all these components was insufficient to satisfactorily explain the observed microbially mediated reducing perturbation. Finally, large amounts of dissolved organic C were found to be released in the system by the jelly polymer filling the reference compartment of the pH and Eh electrodes permanently installed over 5 years in flow-through cells on the water circulation loop of the PC experiment. Glycerol was further identified by chromatographic analysis as the main organic compound released by the electrodes. From the analysis results, as well as from the geochemical calculations, the most likely primary organic C source fuelling the microbial perturbation was glycerol released from the polymeric gel filling the reference electrodes (1.6 g glycerol/electrode). Other sources, such as acetone, may also have contributed to microbial processes, but only to a minor extent.

► The cause of a microbial perturbation of an in situ geochemistry experiment in clay is identified.
► Bacterial activity plays a key role in restoring highly reducing conditions in porewater.
► Bacterial activity was fuelled by contamination of porewater by dissolved organic carbon (DOC).
► Glycerol released from pH–Eh electrode polymer gel was the main source of organic carbon.
► Constant water recirculation in close loop aggravated the contamination of porewater by DOC.