کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
5102825 1480091 2017 8 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
A novel genome signature based on inter-nucleotide distances profiles for visualization of metagenomic data
ترجمه فارسی عنوان
امضای جدید ژنوم براساس پروفایل فاصله بین نوکلئوتیدی برای تجسم داده های متان ژنومیک است
کلمات کلیدی
موضوعات مرتبط
مهندسی و علوم پایه ریاضیات فیزیک ریاضی
چکیده انگلیسی
There has been a growing interest in visualization of metagenomic data. The present study focuses on the visualization of metagenomic data using inter-nucleotide distances profile. We first convert the fragment sequences into inter-nucleotide distances profiles. Then we analyze these profiles by principal component analysis. Finally the principal components are used to obtain the 2-D scattered plot according to their source of species. We name our method as inter-nucleotide distances profiles (INP) method. Our method is evaluated on three benchmark data sets used in previous published papers. Our results demonstrate that the INP method is good, alternative and efficient for visualization of metagenomic data.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Physica A: Statistical Mechanics and its Applications - Volume 482, 15 September 2017, Pages 87-94
نویسندگان
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