Keywords: خوشه های گروه های ارتوقی; RNA-seq; RNA sequencing; GO; gene ontology; KEGG; Kyoto Encyclopedia of Genes & Genome, GENES database; GPCR; G-protein-coupled receptor; Poecilobdella javanica; P. javanica; Hirudo medicinalis; H. medicinalis; Haemadipsa cavatuses; H. cavatuses; Whitmani
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Keywords: خوشه های گروه های ارتوقی; ABA; abscisic acid; DTGs; differentially transcribed genes; ROS; reactive oxygen species; SOD; superoxide dismutase; POD; peroxidase; CAT; catalase; APX; ascorbate peroxidase; GR; glutathione reductase; COG; clusters of orthologous groups; FDR; false disc
Keywords: خوشه های گروه های ارتوقی; Chromosome; Chromid; Nonsymbiotic plasmid; Symbiotic plasmid; Population structure; Ancestor; Population expansion; ANI; average nucleotide identity; COGs; Clusters of orthologous groups;
Proteome-wide identification of lysine succinylation in thermophilic and mesophilic bacteria
Keywords: خوشه های گروه های ارتوقی; COGs; Clusters of orthologous groups; KAT; lysine acyltransferase; KDAC; lysine deacylase; LC-MS/MS; liquid chromatography-tandem mass spectrometry; PBS; phosphate buffered saline; PDB; Protein Data Bank; PTM; post-translational modification; RCSB; Resear
Keywords: خوشه های گروه های ارتوقی; CPU; central processing unit; COG; clusters of orthologous groups; DBMS; database management system (DBMS); de.NBI; German Network for Bioinformatics Infrastructure; EC; enzyme commission number; eggNOG; evolutionary genealogy of genes non-supervised orth
Keywords: خوشه های گروه های ارتوقی; ABST; 2,2â²-azino-bis-(3-ethylbenzothiazoline-6-sulphonate); AP2/ERF; APETELA2/ethylene responsive factor; C4H; cinnamate 4-hydroxylase; CC; N-terminal coiled-coil; COG; clusters of orthologous groups; FC; fold change; FDR; false discovery rate; GO; gene
Keywords: خوشه های گروه های ارتوقی; AA; amino acid; COG; Clusters of Orthologous Groups; COG1; 604 COGs distributed in both prokaryotes and eukaryotes; COG2; 456 COGs from 44 mesophilic species; Ke; the proportion of Group to Atom on the side-chains of AA in prokaryotic proteins; Kp; the pr
Keywords: خوشه های گروه های ارتوقی; CNP; clusters of nucleotide polymorphisms; COG; clusters of orthologous groups; DLV; double locus variant; H. pylori; Helicobacter pylori; ISR; interspersed sequences of the recipient; MLSA; multilocus sequence analysis; omp; outer membrane protein; r/m;
Genomic insights into Photobacterium damselae subsp. damselae strain KC-Na-1, isolated from the finless porpoise (Neophocaena asiaeorientalis)
Keywords: خوشه های گروه های ارتوقی; Photobacterium damselae ssp. damselae; KC-Na-1; Cetaceans; Pathogens; PDD; Photobacterium damselae subsp. damselae; COG; Clusters of Orthologous Groups; plpV; phospholipase; colP; collagenase; nusB; N utilization substance protein B; tdh; thermostable dir
Hepatic transcriptome analysis of juvenile GIFT tilapia (Oreochromis niloticus), fed diets supplemented with different concentrations of resveratrol
Keywords: خوشه های گروه های ارتوقی; Nr; non-redundant protein database; Nt; non-redundant nucleotide database; GO; gene ontology; COG; Clusters of Orthologous Groups; KEGG; Kyoto Encyclopedia of Gene and Genomes; NGS; next-generation sequencing; DEG; differentially expressed gene; RES; resv
Pseudomonas silesiensis sp. nov. strain A3T isolated from a biological pesticide sewage treatment plant and analysis of the complete genome sequence
Keywords: خوشه های گروه های ارتوقی; ANIb; Average Nucleotide Identity based on BLAST; COG; Clusters of Orthologous Groups; DDH; DNA-DNA Hybridization; FAME; Fatty Acid Methyl Esters; MIGS; Minimum Information about a Genome Sequence; MLSA; Multilocus Sequence Analysis; PHA; polyhydroxyalkan
Comparative transcriptome analysis of genes involved in Na+ transport in the leaves of halophyte Halogeton glomeratus
Keywords: خوشه های گروه های ارتوقی; CDS; coding DNA sequence; COG; Clusters of Orthologous Groups; CS; consensus sequence; DEIs; differentially expressed isoforms; FL; full-length; GO; Gene Ontology; H. glomeratus; Halogeton glomeratus; HgNHX1; H. glomeratus vacuolar Na+/H+ antiporter; Iso-
Deep sequencing-based characterization of transcriptome of Pyrus ussuriensis in response to cold stress
Keywords: خوشه های گروه های ارتوقی; GO; Gene Ontology; COG; clusters of orthologous groups; KEGG; Kyoto Encyclopedia of Genes and Genomes; CRT; cis-acting element; DEGs; differentially expressed genes; CA; cold acclimation; qPCR; quantitative real-time RT-PCR; Pyrus ussuriensis; RNA-Seq; Co
A comparative proteomic characterization and nutritional assessment of naturally- and artificially-cultivated Cordyceps sinensis
Keywords: خوشه های گروه های ارتوقی; Naturally- and artificially-cultivated Cordyceps sinensis; Nutritional value; Mass-spectrometry; Label-free quantification proteomics; Metabolomics; PCA; Principal component analysis; GO; Gene ontology Terms; iBAQ; intensity based absolute quantification;
De novo transcriptome sequencing and analysis of Euphorbia pekinensis Rupr. and identification of genes involved in diterpenoid biosynthesis
Keywords: خوشه های گروه های ارتوقی; EPR; Euphorbia pekinensis Radixz; GO; gene ontology; COGs; Clusters of Orthologous Groups; KEGG; Kyoto Encyclopedia of Genes and Genomes; NCBI; National Center for Biotechnology Information; qRT-PCR; quantitative real-time reverse transcription PCR; Nt; n
Transcriptome profiling of the Plutella xylostella (Lepidoptera: Plutellidae) ovary reveals genes involved in oogenesis
Keywords: خوشه های گروه های ارتوقی; bp; Base pair(s); BmCho; Bombyx mori chorion; cAMP; Cyclic adenosine 3â²,5â²-monophosphate; Cdks; Cyclin-dependent kinases; cDNA; DNA complementary to RNA; COG; Clusters of Orthologous Groups; FDR; False discovery rate; FPKM; Fragments Per Kilobase of t
Functional genomics provides insights into the role of Propionibacterium freudenreichii ssp. shermanii JS in cheese ripening
Keywords: خوشه های گروه های ارتوقی; Cas; CRISPR-associated protein; CDS; coding sequence; COG; clusters of orthologous groups; CRISPR; clustered regularly interspaced short palindromic repeats; EMPP; Embden-Meyerhof-Parnas-pathway; FDR; false discovery rate; GI; genomic island; HGT; horizon
Transcriptomic analysis of flower development in tea (Camellia sinensis (L.))
Keywords: خوشه های گروه های ارتوقی; RNA-Seq; RNA sequencing; DEGs; Differentially expressed genes; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; RPKM; Reads per kb per million; COG; Clusters of orthologous groups; bHLH; Basic helix-loop-helix; GI; Gigantea; PIF3; Phytoch
Genomic characterization of a fructophilic bee symbiont Lactobacillus kunkeei reveals its niche-specific adaptation
Keywords: خوشه های گروه های ارتوقی; LAB; lactic acid bacteria; FLAB; fructophilic lactic acid bacteria; CDS; protein coding sequences; COG; Clusters of Orthologous Groups; KO; KEGG Orthology; KAAS; KEGG Automatic Annotation Server; PTS; phosphotransferase system; Lactobacillus kunkeei; Comp
Transcriptome and selected metabolite analyses reveal points of sugar metabolism in jackfruit (Artocarpus heterophyllus Lam.)
Keywords: خوشه های گروه های ارتوقی; AGPase; adenosine diphosphate glucose pyrophosphorylase; AI; acid invertase; CINV; cytoplasmic invertase; COG; clusters of orthologous groups; CWINV; cell wall invertase; CYC-β; lycopene beta-cyclase; Ct; cycle threshold; DAP; day after pollination; FK;
BOG: R-package for Bacterium and virus analysis of Orthologous Groups
Keywords: خوشه های گروه های ارتوقی; Bacterium and virus analysis; Clusters of Orthologous Groups; Hypergeometric test; Mann–Whitney Rank Sum test; Gene set enrichment analysis; Tabular and graphical visualization
Five pectinase gene expressions highly responding to heat stress in rice floral organs revealed by RNA-seq analysis
Keywords: خوشه های گروه های ارتوقی; Rice; High temperature damage; Transcriptome; RNA-seq; Pectinase; CAT; catalase; COG; Clusters of Orthologous Groups; DEGs; differentially expressed genes; FDR; false discovery rate; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; PE; pe
Transcriptome characterization and SSR discovery in large-scale loach Paramisgurnus dabryanus (Cobitidae, Cypriniformes)
Keywords: خوشه های گروه های ارتوقی; GO; gene ontology; SSRs; simple sequence repeats; COG; Clusters of Orthologous Groups; KOG; Eukaryotic Orthologous Groups; KEGG; Kyoto Encyclopedia of Genes and Genomes; QTL; quantitative trait loci; Paramisgurnus dabryanus; Illumina sequencing; Transcrip
Transcriptome sequencing and comparative analysis reveal long-term flowing mechanisms in Hevea brasiliensis latex
Keywords: خوشه های گروه های ارتوقی; LFL; Long-term flowing latex; BLAST; Basic local alignment search tool; COG; Clusters of orthologous groups; FDR; False discovery rate; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; Nr; Non-redundant; NCBI; National Center for Biotechn
Effects of the protonophore carbonyl-cyanide m-chlorophenylhydrazone on intracytoplasmic membrane assembly in Rhodobacter sphaeroides
Keywords: خوشه های گروه های ارتوقی; AFM; atomic force microscopy; BChl; bacteriochlorophyll a; β-OG; n-octyl β-d-glucopyranoside; CCCP; carbonyl-cyanide m-chlorophenyl-hydrazone; CM; cytoplasmic membrane; CNE; clear native electrophoresis; COGs; clusters of orthologous groups; DOC; deoxyc
Illumina-based de novo transcriptome sequencing and analysis of Amanita exitialis basidiocarps
Keywords: خوشه های گروه های ارتوقی; AeBA; A. exitialis basidiocarp; AMA; amanitin; bp; base pair; CDS; coding sequences; COG; Clusters of Orthologous Groups; dNTP; deoxyribonucleotide triphosphate; EST; expressed sequence tag; E-value; Expect-value; GO; Gene Ontology; KEGG; Kyoto Encycloped
The okra (Abelmoschus esculentus) transcriptome as a source for gene sequence information and molecular markers for diversity analysis
Keywords: خوشه های گروه های ارتوقی; ACC-oxidase; aminocyclopropanecarboxylate oxidase; bp; base pair; COG; Clusters of Orthologous Groups; CTAB; cetyl trimethylammonium bromide; dNTP; deoxyribonucleotide triphosphate; EDTA; ethylenediaminetetraacetic acid; EST; expressed sequence tag; E-val
Transcriptome sequencing, annotation and expression analysis of Nannochloropsis sp. at different growth phases
Keywords: خوشه های گروه های ارتوقی; GO; Gene Ontology; COG; Clusters of Orthologous Groups; Nr; Genebank non-redundant database; KEGG; Kyoto Encyclopedia of Genes and Genomes; AGRIS; Arabidopsis Gene Regulatory Information Server; RPKM; read per kilobase of exon model per million mapped rea
Minority of mammalian orthologs can be regarded as physiologically closest genes
Keywords: خوشه های گروه های ارتوقی; Blosum; blocks of amino acid substitution matrix; C2H2; cysteine(2)histidine(2); COG; clusters of orthologous groups; dN; distance of nonsynonymous substitutions; dS; distance of synonymous substitutions; GPCR; G-protein-coupled receptor; InterPro; integr
Sequence of Leptospira santarosai serovar Shermani genome and prediction of virulence-associated genes
Keywords: خوشه های گروه های ارتوقی; MAT; microscope agglutination test; LPS; lipopolysaccharide; Lig proteins; leptospira immunoglobulin-like proteins; EMJH; Ellinghausen-McCullough-Johnson-Harris; MAQ software; Mapping and Assembly with Qualities software; iCORN; Iterative Correction