Keywords: توالی کدگذاری; Toxins; Transcriptomic; Lyophilized venom; Pit-vipers; Coding sequences;
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Keywords: توالی کدگذاری; ABC; ATP-binding cassette; AHBA; 3-amino-5-hydroxybenzoic acid; aminoDAHP; 3,4-dideoxy-4-amino-d-arabino-heptulosonic acid 7-phosphate; CDS; coding sequences; DCW; dry cell weight; DEGs; differentially expressed genes; GYM; glucose yeast malt; RP-HPLC-FD;
Keywords: توالی کدگذاری; GH; growth hormone; GHRL; ghrelin; GHS-R; growth hormone secretagogue receptor; GOAT; ghrelin O-acyl transferase; GPCR; G-protein coupled receptor; MBOAT; membrane-bound O-acyl transferase; Cds; coding sequences; Ghrelin; GOAT; GHS-R 1a; Monotremes; Evolu
Whole transcriptome analysis reveals potential novel mechanisms of low-level linezolid resistance in Enterococcus faecalis
Keywords: توالی کدگذاری; ABC; ATP-binding cassette; BHI; Brain Heart Infusion; CDSs; Coding sequences; COGs; Cluster of Orthologous Groups; DEG; Differentially expressed gene; FDR; False discovery rate; FPKM; Fragments per kilobase exon per million mapped fragments; GO; Gene Onto
Transcriptome profiling reveals candidate cleft palate-related genes in cultured Chinese sturgeons (Acipenser sinensis)
Keywords: توالی کدگذاری; CL; craniofacial defect affecting the lip only; CLP; craniofacial defect affecting the lip and palate; CP; craniofacial defect affecting the palate only; IRF6; Interferon regulatory factor 6; MAFB; MAF bZIP transcription factor B; ARHGAP29; Rho GTPase act
Genetic mapping of a lobed-leaf gene associated with salt tolerance in Brassica napus L.
Keywords: توالی کدگذاری; QTL; quantitative trait locus; IP; intron polymorphic; SCAR; sequence characterized amplified region; CDS; coding sequences; ORF; open reading frame; SLA; specific leaf area; NPR; net photosynthetic rate; LS; leaf shape; LA; leaf area; RL; root length; LF
Molecular characterization of the TaWTG1 in bread wheat (Triticum aestivum L.)
Keywords: توالی کدگذاری; QTL; Quantitative trait loci; TFBS; transcription factor binding sites; CDS; coding sequences; ESTs; Expression sequence tags; RPKM; Reads per kilobase per million reads; tpm; transcripts per million; Expression pattern; Structure; Transcription factor; S
RNA-Seq-derived identification of differential transcription in the eggplant (Solanum melongena) following inoculation with bacterial wilt
Keywords: توالی کدگذاری; ATP; adenosine triphosphate; Aux; auxin; bp; base pair(s); cDNA; DNA complementary to RNA; CDS; coding sequences; CNGCs; cyclic nucleotide gated channels; COG; clusters of orthologous genes; dpi; days post-inoculation; EPS; extracellular polysaccharides;
Molecular cloning and expression analysis of ammonium transporters in tea plants (Camellia sinensis (L.) O. Kuntze) under different nitrogen treatments
Keywords: توالی کدگذاری; N; nitrogen; NUE; nitrogen utilization efficiency; HATS; high-affinity transport system; LATS; low-affinity transport system; DCD; dicyandiamide; AMT; ammonium transporters; CDS; coding sequences; GAPDH; glyceraldehyde-3-phosphate dehydrogenase; Vmax; max
Transcriptome analysis of starch and sucrose metabolism across bulb development in Sagittaria sagittifolia
Keywords: توالی کدگذاری; GO; Gene ontology; KEGG; Kyoto encyclopedia of genes and genomes; DEGs; Differentially expressed genes; Susy; Sucrose synthase; INV; Invertase; SPS; Sucrose-phosphate synthase; ADPG; Adenosine diphosphate glucose; GBSS; Granule-bound starch synthase; SBE;
Pan-genomic approach shows insight of genetic divergence and pathogenic-adaptation of Pasteurella multocida
Keywords: توالی کدگذاری; BRIG; BLAST Ring Image Generator; CDSs; Coding sequences; COG; Clusters of Orthologous Groups database; GC-content; Guanine-cytosine content; GEIs; Genomic islands; GIPSy; Genomic Island Prediction Software; HGT; Horizontal gene transfer; HS; Hemorrhagic
Dissimilar substitution rates between two strands of DNA influence codon usage pattern in some human genes
Keywords: توالی کدگذاری; CUB; codon usage bias; E. coli; Escherichia coli; S. typhimurium; Salmonella typhimurium; tAI; tRNA adaptation index; CDS; coding sequences; RSCU; relative synonymous codon usage; Nc; effective number of codon; CA; correspondence analysis; PR2; parity rul
Molecular cloning and characterization of APOBEC3 family in tree shrew
Keywords: توالی کدگذاری; 3DPCR; differential DNA denaturation PCR; A; adenosine; AID; activation-induced cytidine deaminase; APOBEC; apolipoprotein B mRNA-editing enzyme catalytic polypeptide proteins; APOBEC3; apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3 pro
Mechanism of N6-methyladenosine modification and its emerging role in cancer
Keywords: توالی کدگذاری; ADAR; adenosine deaminase, RNA specific; α-KG; α-ketoglutarate; ALKBH5; alkB homologue 5; AML; acute myeloid leukemia; CDS; coding sequences; CLIP; cross-linking and immunoprecipitation; eIF3; eukaryotic initiation factor 3; ESC; embryonic stem cell; FO
An overview on the DNA nucleotide compositions across kingdoms
Keywords: توالی کدگذاری; CDS; coding sequences; APCC; average purine content of CDS; TI; Thermo index; mt; mitochondrion/mitochondrial; Nucleotide composition; GC content; Purine content; Thermophilicity; Genome;
Development of a multiplex PCR assay for the detection and differentiation of Burkholderia pseudomallei, Burkholderia mallei, Burkholderia thailandensis, and Burkholderia cepacia complex
Keywords: توالی کدگذاری; Bpc; Burkholderia pseudomallei complex; Bcc; Burkholderia cepacia complex; GE; genomic equivalents; CDS; coding sequences; SNP; single nucleotide polymorphism; B. pseudomallei; B. mallei; B. thailandensis; B. cepacia; Differentiation; Beta-lactamase genes
Conditional tenomodulin overexpression favors tenogenic lineage differentiation of transgenic mouse derived cells
Keywords: توالی کدگذاری; aa; amino acid; AKP; alkaline phosphatase; aP2; adipocyte protein 2; ASCs; adipose derived stem cells; BMSCs; bone marrow derived stem cells; CDS; coding sequences; COL1; collagens I; COL2; collagens II; COL3; collagens III; COL6; collagens VI; DCN; decor
Research articleProteomic comparison of Chelidonium majus L. latex in different phases of plant development
Keywords: توالی کدگذاری; Chemometrics; Defense-related proteins; Greater Celandine; Label-free protein quantification; Major latex protein; Milky sap; 2-DE; two-dimensional electrophoresis; ABC transporters; ATP-binding cassette transporters; CDS; coding sequences; LRR; leucine-r
Comparative transcriptome analysis reveals potential gene targets for ovipositional inhibition by diallyl trisulfide against female Sitotroga cerealella
Keywords: توالی کدگذاری; DATS; diallyl trisulfide; DEGs; differentially expressed genes; EG; experimental group; CG; control group; Nr; non-redundant protein database; Nt; non-redundant nucleotide database; Swiss-Prot; Swiss Protein database; KEGG; Kyoto Encyclopedia of Genes and
Identification of three homologous latex-clearing protein (lcp) genes from the genome of Streptomyces sp. strain CFMR 7
Keywords: توالی کدگذاری; (Lcp); Latex clearing protein; (OxiA); Oxidoreductase α-subunit; (OxiB); Oxidoreductase β-subunit; (GPC); Gel Permeation Chromatography; (ATR-FTIR); Attentuated Total Reflectance Fourier Transform Infrared Spectroscopy; (SEM); Scanning Electron Microsco
ADAR-Mediated RNA Editing Predicts Progression and Prognosis of Gastric Cancer
Keywords: توالی کدگذاری; Transcriptome; Editome; RNA Editing; ADARs; ADAR; adenosine deaminase that act on RNA; A-to-G; adenosine to guanosine; A-to-I; adenosine to inosine; CDS; coding sequences; CM; catalytic mutant; DR; down-regulation; edt; edited; EV; empty vector; GC; gastr
MicroRNA variants as genetic determinants of bone mass
Keywords: توالی کدگذاری; BMD; bone mineral density; CDS; coding sequences; DGCR8; DiGeorge critical region 8; GWAS; genome wide association study; lncRNA; long noncoding RNA; MSCs; mesenchymal stem cells; miRNA, miR; microRNA; miR-SNPs; microRNA gene SNPs; miR-TS-SNPs; microRNA t
Transcriptomic analysis of Rongchang pig brains and livers
Keywords: توالی کدگذاری; RNA-seq; RNA sequencing; DEGs; differentially expressed genes; NMS; neuromedin S; MSH; melanocyte-stimulating hormone; ECLP; extracorporeal liver perfusion; SAGE; serial analysis of gene expression; IGFBPs; insulin-like growth factor binding proteins; qRT
Research paperSystematic analysis of maize class III peroxidase gene family reveals a conserved subfamily involved in abiotic stress response
Keywords: توالی کدگذاری; PRXs; class III peroxidases; ROS; reactive oxygen species; H2O2; hydrogen peroxide; Mya; million years ago; CDS; coding sequences; HMM; Hidden Markov Model; NJ; Neighbor-Joining; Os; Oryza sativa; Zm; Zea mays; Sb; Sorghum bicolor; Maize; Class III peroxi
Comparative genomic analysis shows that Streptococcus suis meningitis isolate SC070731 contains a unique 105Â K genomic island
Keywords: توالی کدگذاری; SS2; Streptococcus suis serotype 2; GI; genomic island; CSF; cerebrospinal fluid; STSS; streptococcal toxic shock syndrome; CDS; coding sequences; IS; insertion sequences; HTP; Histidine triad proteins; PI; pathogenicity island; TA; toxin-antitoxin; LCâ
A novel microRNA regulates osteoclast differentiation via targeting protein inhibitor of activated STAT3 (PIAS3)
Keywords: توالی کدگذاری; miRNAs; microRNAs; PIAS3; protein inhibitor of activated STAT3; M-CSF; macrophage colony stimulating factor; RANKL; receptor activator of nuclear factor-κB ligand; RANK; receptor activator of NF-κB; OPG; osteoprotegerin; MAPKs; mitogen-activated protein
Characterization and sub-cellular localization of SS1R, SS2R, and SS5R in human late-stage prostate cancer cells: Effect of mono- and bi-specific somatostatin analogs on cell growth
Keywords: توالی کدگذاری; SST; somatostatin; SSTR; human somatostatin receptor (mRNA); SSR; human somatostatin receptor (protein); SSAs; somatostatin analogs; PCa; prostate cancer; ATP; adenosine triphosphate; FAM; fluorescent dye 6-carboxy-fluorescein; CDS; coding sequences; BrdU
Analysis of genetic variations across regulatory and coding regions of kappa-casein gene of Indian native cattle (Bos indicus) and buffalo (Bubalus bubalis)
Keywords: توالی کدگذاری; Kappa casein; Molecular characterization; Genetic variability; Promoter region; Coding sequences; Linkage disequilibrium
Molecular structure, expression pattern and functional characterisation of APRIL in an aquatic mammal
Keywords: توالی کدگذاری; APRIL; A proliferation inducing ligand; TNF; tumour necrosis factor; fAPRIL; finless porpoise APRIL cDNA; RACE; the rapid amplification of cDNA ends; pET43.1a-fsAPRIL; recombinant soluble fAPRIL; DE3; Escherichia coli BL21; fsAPRIL; soluble fAPRIL; IUCN;
Complete nucleotide sequence of plasmid pND6-2 from Pseudomonas putida ND6 and characterization of conjugative genes
Keywords: توالی کدگذاری; AMP; adenosine monophosphate; Ampr; ampicillin-resistant; AMPSase; adenylosuccinate synthetase; BLAST; basic local alignment search tool; bp; base pair; °C; celcius degree; cAMP; cyclic adenosine monophosphate; CDSs; coding sequences; C5 Mtase; C-5 cytos
Illumina-based de novo transcriptome sequencing and analysis of Amanita exitialis basidiocarps
Keywords: توالی کدگذاری; AeBA; A. exitialis basidiocarp; AMA; amanitin; bp; base pair; CDS; coding sequences; COG; Clusters of Orthologous Groups; dNTP; deoxyribonucleotide triphosphate; EST; expressed sequence tag; E-value; Expect-value; GO; Gene Ontology; KEGG; Kyoto Encycloped
Sequence of Leptospira santarosai serovar Shermani genome and prediction of virulence-associated genes
Keywords: توالی کدگذاری; MAT; microscope agglutination test; LPS; lipopolysaccharide; Lig proteins; leptospira immunoglobulin-like proteins; EMJH; Ellinghausen-McCullough-Johnson-Harris; MAQ software; Mapping and Assembly with Qualities software; iCORN; Iterative Correction
Identification and mRNA expression of pi-class glutathione S-transferase and selenium-dependent glutathione peroxidase in the gudgeon Gobio gobio exposed to PCB 77
Keywords: توالی کدگذاری; Gudgeon; pi-GST; GPx; Coding sequences; Expression level; PCB 77;
Insight into pattern of codon biasness and nucleotide base usage in serotonin receptor gene family from different mammalian species
Keywords: توالی کدگذاری; 5-HT; 5-Hydroxy tryptamine; GPCR; G-Protein Coupled Receptor; 7-TM; 7-Transmembrane; CDS; Coding Sequences; RSCU; Relative Synonymous Codon Usage; COA; Correspondance Analysis; SD; Standard Deviation; ENc; Effective Number of Codons; GES; Goldman Engelman
Molecular cloning and expression study of pi-class glutathione S-transferase (pi-GST) and selenium-dependent glutathione peroxidase (Se-GPx) transcripts in the freshwater bivalve Dreissena polymorpha
Keywords: توالی کدگذاری; Dreissena polymorpha; Bivalvia mollusc; Pi-class GST; Selenium-dependent GPx; Coding sequences; Expression pattern
Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB)
Keywords: توالی کدگذاری; 3D; three dimensional; CAI; codon adaptation index; CDS; coding sequences; CHGC; Chinese National Human Genome Center; DDBJ; DNA Data Bank of Japan; DKFZ; Deutsches Krebsforschungszentrum Heidelberg; EMBL; The European Molecular Biology Laboratory; EST; e
A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation
Keywords: توالی کدگذاری; Coding sequences; Non-coding sequences; DNA;