Keywords: aHR; adjusted HR; BRCA2; breast cancer 2, early onset; CIs; confidence intervals; DFS; disease-free survival; ENCODE; encyclopedia of DNA Elements; ERCC1; excision repair cross-complementing group 1; ERG; V-ets avian erythroblastosis virus E26 oncogene re
مقالات ISI (ترجمه نشده)
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Keywords: Next generation sequencing; Online database; Epigenome; Methylome; Methylation; Chromatin accessibility; Histone modifications; 3D genome; TADs; ENCODE; ROADMAP;
Keywords: CNV, copy number variations; TFBS, transcription factor binding sites; COSMIC, catalog of somatic mutations in cancer; ENCODE, encyclopedia of DNA elements; TCGA, the cancer genome atlasCopy number variation; Apoptosis-effector genes; Gene dosage; ENCODE;
Keywords: FOXA1; FOXA2; HNF4A; BIRC5; ENCODE; GWAS
Keywords: Essential tremor; Brain; Genetics; Human population; Mouse models; Pathophysiology; ABA; Allen brain atlas; AβPPswe/PS1ÎE9; amyloid-β protein precursor and presenilin-1; AD; Alzheimer's disease; ALS; amyotrophic lateral sclerosis; ATP; adenosine tri-ph
Genetic variants within 17q12 are associated with the risk of cervical cancer in the Han Chinese population
Keywords: HR-HPV; high-risk human papillomavirus; GWAS; genome-wide association study; SNP; single nucleotide polymorphism; ENCODE; the Encyclopedia of DNA Elements; OR; odds ratio; MAF; minor allele frequency; LD; linkage disequilibrium; CI; confidence interval; O
Applications of ENCODE data to systematic analyses via data integration
Keywords: ENCODE; Data integration; Transcription factors; Genomic alterations; Drug discovery;
Shell-encoded Au nanoparticles with tunable electroactivity for specific dual disease biomarkers detection
Keywords: Shell; Encode; Tunable electroactivity; Amplified currents; Dual screening;
The hypoxia-responsive long non-coding RNAs may impact on the tumor biology and subsequent management of breast cancer
Keywords: BCAR4; breast cancer anti-estrogen resistance 4; EFNA3; ephrinA3; ENCODE; the encyclopedia of DNA elements; GAS5; growth arrest specific 5; HIF; hypoxia-inducible factor; HOTAIR; HOX transcript antisense RNA; H19; imprinted maternally expressed transcript
DNA methylation and antipsychotic treatment mechanisms in schizophrenia: Progress and future directions
Keywords: ADR; adverse drug reaction; ENCODE; Encyclopedia of DNA Elements; FES; first-episode schizophrenia; FACS; fluorescence-activated cell sorting; FGA; first generation antipsychotic; LCM; laser capture microdissection; SGA; second generation antipsychotic; A
Advances of DNase-seq for mapping active gene regulatory elements across the genome in animals
Keywords: DHSs; DNase I hypersensitive sites; CREs; cis-regulatory elements; TF; transcription factor; TSS; transcription start site; SNPs; single nucleotide polymorphisms; BMP4; bone morphogenetic protein 4; ENCODE; The Encyclopedia of DNA Elements; ATAC-seq; assa
Genetic variation on the NFKB1 genes associates with the outcomes of HCV infection among Chinese Han population
Keywords: Hepatitis C virus; Nuclear factor-kappa B; Transcription; Polymorphism; NFKB1; nuclear factor-kappa B1; HCV; hepatitis C virus; HCC; hepatocellular carcinoma; LRD; liver-related death; NF-κB; nuclear factor-kappa B; SNPs; single nucleotide polymorphisms;
The functional polymorphisms of ARID5B and IKZF1 are associated with acute myeloid leukemia risk in a Han Chinese population
Keywords: ALL; acute lymphoblastic leukemia; AML; acute myeloid leukemia; GWAS; genome-wide association study; 3â²UTR; 3â² untranslated region; IKZF1; IKAROS family zinc finger 1 (Ikaros); ARID5B; AT rich interactive domain 5B (MRF1-like); HSCs; hematopoietic ste
Review articleDeregulation of α-synuclein in Parkinson's disease: Insight from epigenetic structure and transcriptional regulation of SNCA
Keywords: α-synuclein; Parkinson's disease; Epigenetics; Gene regulation; DNA methylation; Histone post translational modification; α-SYN; α-synuclein; CGI; CpG island; CTD; c-terminal domain; DA; dopaminergic neurons; DLB; Diffuse Lewy Body; ENCODE; Encyclopedi
The regulation of human globin promoters by CCAAT box elements and the recruitment of NF-Y
Keywords: α; alpha; β; beta; βmaj; beta major; βmin; beta minor; δ; delta; ε; epsilon; γ; gamma; ζ; zeta; C/EBP; CCAAT enhancer binding protein; ChIP; chromatin immunoprecipitation; ChIP-seq; chromatin immunoprecipitation-sequencing; CDP; CCAAT displacement
Novel PDE10A transcript diversity in the human striatum: Insights into gene complexity, conservation and regulation
Keywords: SNP; single nucleotide polymorphism; cAMP; cyclic adenosine monophosphate; cGMP; cyclic guanosine monophosphate; MSN; medium spiny neurons; HC; healthy control; BD; bipolar disorder; RLM-RACE; RNA ligase mediated rapid amplification of cDNA ends; IRB; ins
Selective repression of gene expression in neuropathic pain by the neuron-restrictive silencing factor/repressor element-1 silencing transcription (NRSF/REST)
Keywords: ENCODE; encyclopedia of DNA elements; HDAC; histone deacetylase; MeCP2; methyl CpG binding protein 2; miRNA; micro-RNA; NRSF; neuron-restrictive silencing factor; REST; repressor element-1 silencing transcription; Epigenetics; Neuropathic pain; NRSF/REST;
DNA methylation detection at single base resolution using targeted next generation bisulfite sequencing and cross validation using capillary sequencing
Keywords: COBRA; Combined Bisulfite Restriction Analysis; DCS; direct capillary sequencing; ENCODE; encyclopedia of DNA elements; ESME; epigenetic sequencing methylation; IGV; integrated genome viewer; ISP; Ion spear Particles; PGM; Personal Genome Machine; TNBS; t
Mapping the response of human fibroblast growth factor 21 (FGF21) promoter to serum availability and lipoic acid in HepG2 hepatoma cells
Keywords: ACTB; β-actin; CPT1A; carnitine palmitoyltransferase 1α; CBP; CREB binding factor; CREB; cAMP response element-binding protein; DHLA; DL-α-dihydrolipoic acid; Elk-1; ETS domain-containing Elk-1; Elk-4; ETS domain-containing Elk-4 (aka SAP-1); ENCODE; e
Deciphering ENCODE
Keywords: ENCODE; genomics; gene regulation; ChIP-seq; RNA-seq; DNase-seq
Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource
Keywords: ENCODE; encyclopaedia of DNA elements; TFBS; transcription factor binding site; ChIP; chromatin immunoprecipitation; ChIP-seq; ChIP followed by massively parallel sequencing; UV; ultraviolet; FAANG; functional annotation of animal genomes; UCSC; Universit
HEpD: A database describing epigenetic differences between Thoroughbred and Jeju horses
Keywords: HEpD; Horse Epigenetic Database; DMR; differentially methylated region; NGS; next generation sequencing; ENCODE; encyclopedia of DNA elements; SNP; single nucleotide polymorphism; TE; transposable element; MeDIP-Seq; Methylated DNA ImmunoPrecipitation Seq
Genética de la artrosis
Keywords: ADNmt; ADN mitocondrial (mitochondrial DNA); ALDH1A2; retinaldehÃdo deshidrogenasa 2 (retinaldehyde dehydrogenase 2); ASTN2; astrotactina 2 (astrotactin-2); BMI; Ãndice de masa corporal (body mass index); BMP; proteÃna morfogenética ósea (bone minera
Molecular signatures of mood stabilisers highlight the role of the transcription factor REST/NRSF
Keywords: AP-1; activator protein 1; ENCODE; Encyclopaedia of DNA Elements; ERK; extracellular-signal-regulated kinase; GPR; Global Pattern Recognition; GÃE; GeneÃEnvironment; NRSF; neuron restrictive silencing factor; REST; repressor element-1 silencing transcri
PHF21B as a candidate tumor suppressor gene in head and neck squamous cell carcinomas
Keywords: HNSCC; Tumor suppressor gene; PHF21B; Epigenetic changes; Copy number alterations; 5-Aza-dC; 5-AZA-2â²-deoxicytidine; ENCODE; ENCyclopedia Of DNA Elements; HNSCC; head and neck squamous cell carcinoma; HPV; human papillomavirus; MS-HRM; Methylation Sensi
Chromatin immunoprecipitation for human monocyte derived macrophages
Keywords: Center for Biomolecular Science and Engineering; CBSE; chemokine ligand 2; CCL-2; Chromatin Immunoprecipitation; ChIP; Chronic myelogenous leukemia; CML; Encyclopedia of DNA Coding Elements; ENCODE; human umbilical vein endothelial cells; HUVEC; immunopre
Characterizing the transmission of acupuncture signal: A combination of experimental and computational study
Keywords: Acupuncture; Zusanli; Spike sorting algorithm; Encode; Feedforward network with STDP rules; Adaption
Exome Array Analysis Identifies Variants in SPOCD1 and BTN3A2 That Affect Risk for Gastric Cancer
Keywords: Stomach Cancer; Genetics; Mutation; Gene Regulation; BTN; butyrophilin; ENCODE; Encyclopedia of DNA Elements; GTEx; genotype-tissue expression; GWAS; genome-wide association studies; GWAS-BJ; the Beijing samples of our previous GWAS; GWAS-NCI; gastric can
Patterns of gene duplication and intron loss in the ENCODE regions suggest a confounding factor
Keywords: Gene evolution; Exon–intron structure; Intron loss; Gene duplication; Gene structure evolution; Mammalian genome evolution; ENCODE
Improving Lamport one-time signature scheme
Keywords: One-time signature; One-way hashing function; Encode; Decode;