SAT-solving in CSP trace refinement
Keywords: CSP; FDR; Concurrency; Process algebra; SAT-solving; Bounded model checking; kk-induction; Safety properties
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Multiple post-translational modifications in hepatocyte nuclear factor 4α
Keywords: PTM; post-translational modification; HNF4α; hepatocyte nuclear factor 4α; MODY-1; maturity onset diabetes of young 1; DR; direct repeat; ApoCIII; apolipoprotein CIII; SDS-PAGE; sodium dodecyl sulfate-polyacrylamide gel electrophoresis; CID; collisi
Appreciating symptoms and deficits in schizophrenia: Right posterior insula and poor insight
Keywords: SSPI; Signs and Symptoms in Psychotic Illness scale; GM; grey matter; WM; white matter; FDR; False Discovery Rate; DSM-IV; Diagnostic Statistical Manual - Fourth edition; MRI; Magnetic Resonance Imaging; Insight; Insula; Interoception; MRI; Schizophreni
Construction of a novel expression vector in Pseudonocardia autotrophica and its application to efficient biotransformation of compactin to pravastatin, a specific HMG-CoA reductase inhibitor
Keywords: Pseudonocardia autotrophica; Pravastatin; Rolling-circle type replication; Acetone-inducible promoter; Biotransformation; HMG-CoA; 3-hydroxy-3-methylglutaryl-Coenzyme A; Vdh; vitamin D3 hydroxylase; Fdx; ferredoxin; Fdr; ferredoxin-NADP+ reductase; SDS; s
IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics
Keywords: FDR; false discovery rate; FP; false positive; ID; identification; IPM; integrated protein model; LIPS; logistic identification of peptide sequences; MS; mass spectrometry; PSM; peptide spectral match; SPIRE; Systematic Protein Investigative Research Envi
Research reportCandidate genes influencing sensitivity and resistance of human glioblastoma to Semustine
Keywords: GBM; glioblastoma; Me-CCNU; methyl-CCNU, Semustine; KEGG; Kyoto Encyclopedia of Genes and Genomes; FDR; false discovery rate; RVM t-test; random variance model t-test; GO; gene ontology; Glioblastoma; Genechip; Bioinformatics; Chemosensitivity; Me-CCNU;
Differential gene expression between inbred Roman high- (RHA-I) and low- (RLA-I) avoidance rats
Keywords: RT-PCR; real-time reverse transcription-polymerase chain reaction; QTL; quantitative trait loci; RNA; ribonucleic acid; cDNA; complementary deoxyribonucleic acid; RHA-I; inbred roman high avoidance rats; RLA-I; inbred roman low avoidance rats; RHA/Verh; o
A Brief History of Postpolio Syndrome in the United States
Keywords: History of medicine; Postpoliomyelitis syndrome; Rehabilitation; FDR; Franklin Delano Roosevelt; IPV; inactivated polio vaccine; MOD; March of Dimes; NHIS; National Health Interview Survey; NIH; National Institutes of Health; OPV; oral polio vaccine; PHI;
Are Colorectal Cancer Screening Recommendations for First-Degree Relatives of Patients With Adenomas Too Aggressive?
Keywords: Colorectal Cancer; Screening Guidelines; Adenoma; ACS-MSTF-ACR; American Cancer Society, the US Multi-Society Task Force on Colorectal Cancer, and the American College of Radiology; CI; confidence interval; CRC; colorectal cancer; FDR; first-degree relati
Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR
Keywords: SSNMR; solid-state NMR; MAS; magic angle spinning; PLN; phospholamban; FDR; frequency-selective dipolar recoupling; DARR; dipolar assisted rotational resonance; Solid-state NMR; Membrane proteins; Magic angle spinning; Phospholamban; REDOR; Frequency-sele
Effect of cleavage enzyme, search algorithm and decoy database on mass spectrometric identification of wheat gluten proteins
Keywords: cv; cultivar; ESTs; expressed sequence tags; FDR; false discovery rate; LMW-GS; low molecular weight glutenin subunit; HMW-GS; high molecular weight glutenin subunit; MUDPIT; multidimensional protein identification technology; PSM; peptide mass spectrum;
A solid phase extraction-based platform for rapid phosphoproteomic analysis
Keywords: Proteomics; Phosphorylation; Chromatography/methods; Mass spectrometry/methods; Phosphoproteomics; ACN; acetonitrile; ETD; electron transfer dissociation; IMAC; immobilized metal ion affinity chromatography; SCX; strong cation exchange chromatography; m/z
The first taste is always with the eyes: A meta-analysis on the neural correlates of processing visual food cues
Keywords: ALE; Activation Likelihood Estimation; LOC; Lateral Occipital Complex; MA; Modeled Activation; OFC; Orbitofrontal cortex; FDR; False Discovery Rate; Food; Pictures; Meta-analysis; fMRI; Hunger; Energy;
Regulation of the Bcas1 and Baiap3 transcripts in the subthalamic nucleus in mice recovering from MPTP toxicity
Keywords: Baiap3; Brain specific angiogenesis inhibitor associated protein 3; Bcas1; Breast carcinoma amplified sequence 1; C7/C28; Control animals day 7 or 28 (saline injected); Ct; Cycle threshold; FDR; False discovery rate; LMPC; Laser micro-dissection pressure
Neural correlates of evaluating hazards of high risk
Keywords: ACC; anterior cingulate cortex; BOLD; blood oxygen level dependent; DLPFC; dorsolateral prefrontal cortex; DMPFC; dorsomedial prefrontal cortex; FDR; false discovery rate; fMRI; functional magnetic resonance imaging; IAT; implicit association task; MPFC;
Original articleClinical endoscopyPrevalence of any size adenomas and advanced adenomas in 40- to 49-year-old individuals undergoing screening colonoscopy because of a family history of colorectal carcinoma in a first-degree relative
Keywords: AA; advanced adenoma; BMI; body mass index; CRC; colorectal cancer; FDR; first-degree relative; OR; odds ratio; RR; relative risk;
Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei
Keywords: A:B; acrylamide:bis-acrylamide ratio; CASP; Critical Assessment of Techniques for Protein Structure; EH; Epidermis containing haustoria; FDR; False discovery rate; HY; sporulating hyphae; MS; mass spectrometry; nESI; nanoelectrospray ionisation; nLC; nano
Colonoscopic findings in first-degree relatives of patients with colorectal cancer: a population-based screening program
Keywords: APSS; Azienda Provinciale per i Servizi Sanitari; BMI; body mass index; CRC; colorectal carcinoma; FDR; first-degree relative; FH; family history; OR; odds ratio; SIO; Sistema Informatico Ospedaliero;
Association between Polymorphisms in Cancer-Related Genes and Early Onset of Esophageal Adenocarcinoma
Keywords: EA; esophageal adenocarcinoma; GERD; gastroesophageal reflux disease; MDA; mean decrease of accuracy; FDR; false discovery rate; 95% CI; 95% confidence interval; Padj; adjusted P value;
Research ReportPrefrontal cortex activity during response inhibition associated with excitement symptoms in schizophrenia
Keywords: BA; Brodmann Area; [deoxy-Hb]; deoxygenated hemoglobin; DLPFC; dorsolateral prefrontal cortex; FDR; false discovery rate; fMRI; functional magnetic resonance imaging; GAF; global assessment of functioning; [Hb]; hemoglobin; NIRS; near-infrared spectroscop
Gene polymorphisms, breast-feeding, and development of food sensitization in early childhood
Keywords: Breast-feeding; food sensitization; gene-environment interaction; AIM; Ancestry informative marker; CBIgE; Cord blood total IgE; FDR; False discovery rate; FS; Food sensitization; HWE; Hardy-Weinberg equilibrium; IL12RB1; IL-12 receptor β1 gene; LD; Link
Twin Study Indicates Loss of Interaction Between Microbiota and Mucosa of Patients With Ulcerative Colitis
Keywords: Dysbiosis; Crohn Disease; Transcript; Inflammation; Microbiome; FDR; false discovery rate; IL; interleukin; PCA; principal component analysis; rDNA; ribosomal DNA;
RT-SVRÂ +Â q: A strategy for post-mascot analysis using retention time and q value metric to improve peptide and protein identifications
Keywords: NKL; natural killer leukemia cell line; RPLC; reversed phase liquid chromatography; MS/MS; tandem mass spectrometry; PSM; peptide spectrum match; RT; retention time; ÎRT; deviation between predicted and experimental RT; SVR; support vector regressor; FDR
Microarray analysis of gene expression changes in the brains of NR2B-induced memory-enhanced mice
Keywords: NR2B transgenic mice; microarray; gene expression profile; RyR; Homer-1c; AD; Alzheimer's diseases; CNS; central nervous system; CREB; cAMP response element-binding protein; ER; endoplasmic reticulum; FDR; false discovery rate; GAPDH; glyceraldehyde-3-pho
Ranking analysis of correlation coefficients in gene expressions
Keywords: Microarray; Gene expression; Correlation coefficient; Ranking analysis; FDR; Cancers
iTRAQ-based quantitative secretome analysis of Phanerochaete chrysosporium
Keywords: iTRAQ; isobaric tag for relative and absolute quantification; 2D-LC-MS/MS; two dimensional liquid chromatography and tandem mass spectrometry; TEAB; Triethylammonium bicarbonate buffer; FDR; false discovery rate; TCEP; Tris 2-carboxyethyl phosphine hydr
Combining Clinical, Pathology, and Gene Expression Data to Predict Recurrence of Hepatocellular Carcinoma
Keywords: Liver Cancer; Relapse; Prognosis; Microarray; AFP; α-fetoprotein; BCLC; Barcelona-Clinic Liver Cancer; CI; confidence interval; CK19; cytokeratin-19; FDR; false discovery rate; FFPE; formalin-fixed paraffin-embedded; GEO; Gene Expression Omnibus; HR; h
iTRAQ-based quantitative proteomic analysis of Gloeothece sp. PCC 6909: Comparison with its sheathless mutant and adaptations to nitrate deficiency and sulfur limitation
Keywords: AP; allophycocyanin; ATP; adenosine triphosphate; EPS; extracellular polymeric substances; FAS1; FasciclinI domain; FDR; false discovery rate; FNR; ferredoxin-NADP+ oxireductase; GS; glutamine synthetase; MMTS; methyl-methane thiosulfonate; OPP; oxidative
Mold allergen sensitization in adult asthma according to integrin β3 polymorphisms and Toll-like receptor 2/+596 genotype
Keywords: Alternaria; Aspergillus; allergy; asthma; Cladosporium; epidemiology; epistasis; genetics; innate immunity; EGEA; Epidemiological Study on the Genetics and Environment of Asthma; FDR; False discovery rate; ICS; Inhaled corticosteroid; ITGB3; Integrin β3;
Intrinsic Subtypes of Gastric Cancer, Based on Gene Expression Pattern, Predict Survival and Respond Differently to Chemotherapy
Keywords: Microarray Analysis; Pharmacogenomics; mRNA; Stomach; Carcinogenesis; CI; confidence interval; FDR; false discovery rate; 5-FU; 5-fluorouracil; GC; gastric cancer; G-DIF; genomic diffuse; G-INT; genomic intestinal; HR; hazard ratio; NTP; nearest template
MicroRNA-Based Classification of Hepatocellular Carcinoma and Oncogenic Role of miR-517a
Keywords: Liver Cancer; Tumor Profiling; OncomiR; Oncogenesis; Akt; protein kinase B; C19MC; chr19q13.41 microRNA cluster; CpG; C-phosphate-G; ERK; extracellular signal regulated kinase; FDR; false discovery rate; GSEA; Gene Set Enrichment Analysis; IGF; insulin gr
The influence of a possible contamination of the victim's clothing by gunpowder residue on the estimation of shooting distance
Keywords: Forensic science; Shooting distance; Gunpowder residue; Total nitrite; FDR; Contamination
Estimation of the number of true null hypotheses when conducting a multiple testing
Keywords: Feature selection; q-values; FDR
Differential protein expression profile in the liver of pikeperch (Sander lucioperca) larvae fed with increasing levels of phospholipids
Keywords: AldoB; fructose biphosphate aldolase B; ATP; adenosin triphosphate; FDR; false discovery rate; GRP75; glucose regulated protein 75; HUFA; highly unsaturated fatty acids; NKEF; natural killer enhancement factor; Prx1; peroxiredoxin-1; PGM1; phosphoglucomut
Bayesian decision theoretic approach to hypothesis problems with skewed alternatives
Keywords: Multiple hypotheses; Microarray; Type-III error; FDR; Directional alternatives; Primary; 62C10; Secondary; 62F03; 62P10;
Mechanisms of allergy and clinical immunologyHost-microbial interactions in childhood atopy: Toll-like receptor 4 (TLR4), CD14, and fecal Escherichia coli
Keywords: Atopy; Toll-like receptor 4; CD14; gene-environment interaction; Escherichia coli; intestinal microbiota; AD; Atopic dermatitis; ALEX; Allergy and Endotoxin; FDR; False discovery rate; KOALA; Child, Parent and Health: Lifestyle and Genetic Constitution; O
Persistent gene expression changes in ventral tegmental area of adolescent but not adult rats in response to chronic nicotine
Keywords: nicotine addiction; adolescent drug abuse; long-term potentiation; nervous system development; nicotinic receptors; Acb; nucleus accumbens; CPP; conditioned place preference; DA; dopamine; FDR; false discovery rate; GCOS; Gene Chip Operating Software; IPA
Combined effect of technical, meteorological and agronomical factors on solid-set sprinkler irrigation: I. Irrigation performance and soil water recharge in alfalfa and maize
Keywords: Maize; Alfalfa; Uniformity; Water loss; Soil water; Pluviometer; FDR
Mast cells from different molecular and prognostic subtypes of systemic mastocytosis display distinct immunophenotypes
Keywords: Mastocytosis; immunophenotype; flow cytometry; KIT mutations; ASM; Aggressive systemic mastocytosis; ASM-AHNMD; Aggressive systemic mastocytosis associated with a clonal non-mast cell lineage hematopoietic disease; BM; Bone marrow; cMCAD; Clonal mast ce
Clinical Advances in Liver, Pancreas, and Biliary TractInsulin-Like Growth Factor Axis Gene Polymorphisms and Clinical Outcomes in Pancreatic Cancer
Keywords: Pancreatic Cancer; Insulin-Like Growth Factor-Axis; Single-Nucleotide Polymorphism; Overall Survival; AKT; v-akt murine thymoma viral oncogene homolog; ERK; extracellular signal-regulated kinase; FDR; false discovery rate; IGF; insulin-like growth facto
Neuropeptide S Receptor Induces Neuropeptide Expression and Associates With Intermediate Phenotypes of Functional Gastrointestinal Disorders
Keywords: FDR; false discovery rate; FGID; functional GI disorders; GC24; colonic geometric center at 24 hours; GC48; colonic geometric center at 48 hours; GI; gastrointestinal; HV; healthy volunteer; IBD; inflammatory bowel disease; IBS; irritable bowel syndrome;
Genome-Wide Association Study Identifies Variants Associated With Histologic Features of Nonalcoholic Fatty Liver Disease
Keywords: GWAS; Nonalcoholic Steatohepatitis; NASH; Farnesyl Diphosphate Farnesyl Transferase 1; ALP; alkaline phosphatase; ALT; alanine aminotransferase; AST; aspartate aminotransferase; BMI; body mass index; CRN; Clinical Research Network; FDFT1; farnesyl diphosp
Association between prostaglandin E receptor 3 polymorphisms and Stevens-Johnson syndrome identified by means of a genome-wide association study
Keywords: Prostaglandin E receptor 3; Stevens-Johnson syndrome; toxic epidermal necrolysis; genome-wide association study; single nucleotide polymorphism; BRLMM; Bayesian Robust Linear Model with a Mahalanobis distance classifier; CE; Conjunctival epithelium; EP3;
Gene-gene interaction in regulatory T-cell function in atopy and asthma development in childhood
Keywords: T regulatory cells; atopy; IgE; asthma; MDR; polymorphism; interaction; birth cohort; FDR; False discovery rate; FOXP3; Forkhead box protein 3; KOALA; Dutch acronym for Child, Parent and Health: Lifestyle and Genetic Constitution; HMOX1; Heme-oxygenase 1;
Evaluation of candidate genes in a genome-wide association study of childhood asthma in Mexicans
Keywords: Allergy; asthma; genetic predisposition to disease; genome-wide association study; single nucleotide polymorphism; CYFIP2; Cytoplasmic FMR1 interacting protein 2 gene; DPP10; Dipeptidyl-peptidase 10 gene; ESR1; Estrogen receptor 1 gene; FDR; False discove
Transcriptomic analysis of patients with tetralogy of Fallot reveals the effect of chronic hypoxia on myocardial gene expression
Keywords: 20; 29; BAX; Bcl-2-associated X protein; CPB; cardiopulmonary bypass; ELISA; enzyme-linked immunosorbent assay; ERK; extracellular signal-regulated kinase; FDR; false discovery rate; MAPK; mitogen-activated protein kinase; RVH; right ventricular hypertrop
Comparison of rat olfactory mucosal responses to carcinogenic and non-carcinogenic chloracetanilides
Keywords: Cy3; Cyanine-3; Cy5; Cyanine-5; d; days; FDR; false discovery rate; h; hour (s); min; minute (s); MMP; matrix metalloproteinase; mo; month (s); OM; olfactory mucosa; PCR; polymerase chain reaction; PMSF; phenylmethanesulfonyl fluoride; SDS; sodium dodecyl
X-irradiation and bystander effects induce similar changes of transcript profiles in most functional pathways in human melanoma cells
Keywords: FDR; false discovery rate; ICM; irradiation conditioned medium; IR; ionising radiation; KEGG; Kyoto Encyclopedia of Genes and Genomes; qRT-PCR; quantitative RT-PCR; Bystander effect; Ionizing radiation; Transcript profiles; Microarrays; Functional pathway
The association of family history of liver cancer with hepatocellular carcinoma: A case-control study in the United States
Keywords: AOR; adjusted odds ratios; CI; confidence intervals; ELISA; enzyme-linked immunosorbent assay; FDR; first degree relatives; Family history; Liver cancer; Diabetes mellitus; Alcohol consumption; Cigarette smoking;
Cystic fibrosis transmembrane conductance regulator gene polymorphisms in patients with primary sclerosing cholangitis
Keywords: CCA; cholangiocarcinoma; CD; Crohn's disease; CF; cystic fibrosis; CFTR; cystic fibrosis transmembrane conductance regulator; DNA; desoxyribonucleic acid; FDR; false discovery rate; IBD; inflammatory bowel disease; IC; indeterminate colitis; LD; linkage