Keywords: طراحی پروتئین; Protein design; Tryptophan fluorescence; Pizza protein; Model protein; Beta-propeller protein;
مقالات ISI طراحی پروتئین (ترجمه نشده)
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Keywords: طراحی پروتئین; Protein folding; Molecular evolution; Protein design; Sequence analysis; Monte Carlo simulation;
Keywords: طراحی پروتئین; Repeat proteins; Protein nanotubes; Self-assembly; Supramolecular interactions; Nanostructures; Protein design;
Keywords: طراحی پروتئین; Organophosphate; Mutation; Protein design; Molecular docking; Protein-ligand interaction; Library design; Ensemble docking;
Keywords: طراحی پروتئین; Heme proteins; Post-translational modifications; Cross-link; Protein design; Inhibitors;
Keywords: طراحی پروتئین; Single-domain antibody (sdAb, nanobody); Protein engineering; Protein stability; Protein aggregation; Protein design; VHH; variable domain of the heavy chain of heavy-chain antibodies; GSS algorithm; Global Sequence Signature algorithm; CDR; complementari
Rational design of metalloenzymes: From single to multiple active sites
Keywords: طراحی پروتئین; UAAs; unnatural amino acids; Rd; rubredoxin; EPR; electron paramagnetic resonance; Az; azurin; SOR; superoxide reductase; PDB; protein data bank; 6-PGLac; 6-phosphogluconolactonase; H-bond; hydrogen-bond; NIR; nitrite reductase; ET; electron transfer; 3SC
Keywords: طراحی پروتئین; Heme proteins; Peroxidase; Protein design; Cooperativity; Channel;
Keywords: طراحی پروتئین; Heme proteins; Protein design; Nitrite reductase; EPR; X-ray crystallography
Keywords: طراحی پروتئین; Man-made redox proteins; Maquettes; Protein design; Cytochrome c; Inter-protein electron transfer; Electron-transfer kinetics; Charge complementarity; Electrostatics; Diffusion
Keywords: طراحی پروتئین; Heme proteins; Protein design; Disulfide bond; Coordination state; Peroxidase activity
Keywords: طراحی پروتئین; Man-made redox proteins; Maquettes; Protein design; Transmembrane proteins; Oxidoreductase; Light-activation; Intraprotein electron transfer; Photosynthesis; Respiration; Evolution
Keywords: طراحی پروتئین; RMSD; root mean square deviation; MD; molecular dynamics; GROMACS; groningen machine for chemical simulations; Protein modeling; Protein design; Molecular dynamics simulations; In silico mutation analysis;
Keywords: طراحی پروتئین; Repeat protein; Protein design; Self-assembly; Monolayer; Gold nanoparticles; Biomolecular templating; Building blocks; Nanoparticle 2D arrays; Nanopatterning;
Keywords: طراحی پروتئین; Lipase; Oligomers; Lattice contacts; Protein design; Saxs; Enzyme activity; Gel filtration;
Keywords: طراحی پروتئین; Protein nanoparticle; Malaria; Vaccine carrier; Protein design; Self-assembly
Keywords: طراحی پروتئین; Protein design; De novo design; QM/MM; Molecular dynamics; Kemp elimination; Diels-Alder; Retro-Aldolase;
Keywords: طراحی پروتئین; Canonical loop; Framework residues; Canonical residues; Protein design; Antibody structure; Binding affinity; Protein stability
Keywords: طراحی پروتئین; Noncovalent assembly; Zinc finger nuclease; Coiled-coil interaction; DNA cleavage; Protein design
Keywords: طراحی پروتئین; Magnetic circular dichroism; Zinc(II) phthalocyanine; Zinc(II) phthalocyanine monosulfonate; Protein design
Keywords: طراحی پروتئین; Aggregation; Unfolding; Protein design; Protein-protein interaction; Electrostatic repulsion;
Keywords: طراحی پروتئین; Evolutionary trace; Protein-protein interaction networks; Functional sites; Molecular evolution; Functional annotation; Protein design;
Keywords: طراحی پروتئین; SVR, support vector regressionCoiled-coil domains; Protein design; Protein modeling; Bioinformatics; Sequence–structure relationship
Keywords: طراحی پروتئین; Protein engineering; Libraries; Proteomics; Protein design; Repeat proteins; Peptide binding; Protein–peptide interactions
Keywords: طراحی پروتئین; Tunnel; Channel; Pore; Pathway; Ligand binding; Ligand transport; Substrate entry; Product release; Protein design; Protein engineering;
Combining Rosetta with molecular dynamics (MD): A benchmark of the MD-based ensemble protein design
Keywords: طراحی پروتئین; Protein design; Backbone flexibility; Molecular dynamics; Rosetta;
Formation of Cys-heme cross-link in K42C myoglobin under reductive conditions with molecular oxygen
Keywords: طراحی پروتئین; Heme proteins; Protein design; Cross-link; Mechanism; X-ray crystallography;
Rational redesign of the ferredoxin-NADP+-oxido-reductase/ferredoxin-interaction for photosynthesis-dependent H2-production
Keywords: طراحی پروتئین; C. reinhardtii; Chlamydomonas reinhardtii; Fd, PetF; ferredoxin; FNR; ferredoxin-NADP+-reductase; HydA1; [FeFe]âhydrogenase of Chlamydomonas reinhardtii; S. 6803; Synechocystis PCC 6803; PS1; Photosystem 1; Protein design; Protein interaction; FNR; NMR;
Elfin: An algorithm for the computational design of custom three-dimensional structures from modular repeat protein building blocks
Keywords: طراحی پروتئین; Repeat protein; Protein design; Protein origami; Genetic algorithm; Computational protein design;
Rational design of botulinum neurotoxin A1 mutants with improved oxidative stability
Keywords: طراحی پروتئین; Light chain; BoNT/A; Toxin; Oxidative stability; Protein stability; Protein design;
Probing the stereospecificity of tyrosyl- and glutaminyl-tRNA synthetase with molecular dynamics
Keywords: طراحی پروتئین; Protein design; Ligand binding; Free energy; Computer simulations; Genetic code;
Insight into the role of halogen bond in the activity of d-mandelate dehydrogenase toward halogenated substrates
Keywords: طراحی پروتئین; Protein design; Dehydrogenase; Halogen bond; Mandelic acid; Halogenated compound;
Research ArticleSide-chain dynamics analysis of KE07 series
Keywords: طراحی پروتئین; Molecular dynamics; Conformational entropy; Generalized order parameter; Protein design;
Structural principles for computational and de novo design of 4Fe–4S metalloproteins
Keywords: طراحی پروتئین; Iron-sulfur; Metalloprotein; Protein design; Oxidoreductase; Symmetry
Distinct mechanisms for DNA cleavage by myoglobin with a designed heme active center
Keywords: طراحی پروتئین; Heme proteins; Protein design; DNA cleavage; Mechanism; Hydrogen-bonding network
The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools
Keywords: طراحی پروتئین; De novo design; Artificial proteins; Protein design; Molecular modeling;
Hydrogen-bonding network in heme active site regulates the hydrolysis activity of myoglobin
Keywords: طراحی پروتئین; Heme proteins; Protein design; Hydrogen-bonding; Hydrolysis; Kinetics
Crystal structure of designed PX domain from cytokine-independent survival kinase and implications on evolution-based protein engineering
Keywords: طراحی پروتئین; Protein design; X-ray crystallography; Protein structure prediction; Cytokine-independent survival kinase; Phox homology; Membrane;
The broad diversity of heme-protein cross-links: An overview
Keywords: طراحی پروتئین; Heme protein; Post-translational modifications; Cross-link; Compound I; Protein design
In silico analysis and experimental verification of OSR1 kinase - Peptide interaction
Keywords: طراحی پروتئین; Computer modeling; Protein design; Peptide conformation; Ste20 kinases; Rosetta Modeling Suite; Chloride transport;
Peroxidase activity of a myoglobin mutant with three distal histidines forming a metal-binding site: Implications for the cross-reactivity of cytochrome c oxidase
Keywords: طراحی پروتئین; Heme proteins; Heme-copper oxidase; Peroxidase; Cross-reactivity; Protein design
A cluster-DEE-based strategy to empower protein design
Keywords: طراحی پروتئین; Integrated intelligent methods; Protein design; Structural bioinformatics; Clustering algorithms; Boolean Satisfiability problem; Dead-End-Elimination
RECENT ADVANCES IN FUNCTIONAL REGION PREDICTION BY USING STRUCTURAL AND EVOLUTIONARY INFORMATION – REMAINING PROBLEMS AND FUTURE EXTENSIONS
Keywords: طراحی پروتئین; bioinformatics; structure; sequence; protein design
An in silico method for designing thermostable variant of a dimeric mesophilic protein based on its 3D structure
Keywords: طراحی پروتئین; Protein design; Protein dimer; Mutation; Conformer library; Self-energy; Stability
Energetics of oligomeric protein folding and association
Keywords: طراحی پروتئین; Oligomeric protein; Protein stability; Protein folding; Thermodynamics; Calorimetry; Protein design
Unusual peroxidase activity of a myoglobin mutant with two distal histidines
Keywords: طراحی پروتئین; Heme protein; Myoglobin; Protein design; Peroxidase; Cooperativity
Relationship between side-chain branching and stoichiometry in β3-peptide bundles
Keywords: طراحی پروتئین; Biomaterial; Protein design; Protein folding; Self-assembly;
Fusing proteins as an approach to study bioenergetic enzymes and processes
Keywords: طراحی پروتئین; FeS; 2 iron-2 sulfur Rieske cluster; Rb.; Rhodobacter; B-B complex; cytochrome bc1-like complex with two cytochromes b fused into one subunit; cytochrome bb; a fusion protein containing two cytochrome b subunits connected together by a linker peptide;
Rational design of DNA sequence-specific zinc fingers
Keywords: طراحی پروتئین; DNA-binding protein; Protein design; Specificity; Affinity; Energy gap
A reporter system that discriminates EF-hand-sensor motifs from signal-modulators at the single-motif level
Keywords: طراحی پروتئین; Monofunctional TyrA; Multidomain protein; Protein design; Site-directed mutagenesis; Calcium-sensor system;