Keywords: مدل سازی پروتئین; Pseudomonas; Lipases; In silico; Protein modeling; Thermostability; Phylogenetic analysis;
مقالات ISI مدل سازی پروتئین (ترجمه نشده)
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Keywords: مدل سازی پروتئین; Junctional epidermolysis bullosa; Whole exome sequencing; Protein modeling;
Keywords: مدل سازی پروتئین; RMSD; root mean square deviation; MD; molecular dynamics; GROMACS; groningen machine for chemical simulations; Protein modeling; Protein design; Molecular dynamics simulations; In silico mutation analysis;
Keywords: مدل سازی پروتئین; SVR, support vector regressionCoiled-coil domains; Protein design; Protein modeling; Bioinformatics; Sequence–structure relationship
Molecular dynamics simulation studies suggests unconventional roles of non-secretary laccases from enteropathogenic gut bacteria and Cryptococcus neoformans serotype D
Keywords: مدل سازی پروتئین; Gut; Laccase; Cryptococcus neoformans; Prostaglandins; Phosphatidylcholine; Serotonin; Protein modeling; Simulation;
Identification of potential inhibitors against nuclear Dam1 complex subunit Ask1 of Candida albicans using virtual screening and MD simulations
Keywords: مدل سازی پروتئین; Protein modeling; MM-PBSA; virtual screening; Dam1 complex; molecular docking; Antifungal; Drug;
Compound heterozygous KCNQ1 mutations (A300T/P535T) in a child with sudden unexplained death: Insights into possible molecular mechanisms based on protein modeling
Keywords: مدل سازی پروتئین; aa; amino acid; BWA; Burrows-Wheeler aligner; CaM; calmodulin; CPR; cardiopulmonary resuscitation; DNA; deoxyribonucleic acid; ECG; electrocardiogram; GOF; gain of function; KCNE1; potassium voltage-gated channel subfamily E member 1; Kv7.1; voltage-gated
Insight into stereochemistry of a new IMP allelic variant (IMP-55) metallo-β-lactamase identified in a clinical strain of Acinetobacter baumannii
Keywords: مدل سازی پروتئین; Acinetobacter baumannii; Metallo-β-lactamase; PCR; Mutation; Protein modeling;
Structural characterization of Giardia duodenalis thioredoxin reductase (gTrxR) and computational analysis of its interaction with NBDHEX
Keywords: مدل سازی پروتئین; Giardia duodenalis; Crystal structure of thioredoxin reductase (gTrxR); NBDHEX; Protein modeling; Covalent docking;
Isolation, characterization and antifungal activity of very long chain alkane derivatives from Cinnamomum obtusifolium, Elaeocarpus lanceifolius and Baccaurea sapida
Keywords: مدل سازی پروتئین; Antifungal; Long chain alkanes; Fatty acids; Molecular docking; Protein modeling;
Characterization of the DNA mismatch repair proteins MutS and MutL in a hypermutator Acinetobacter baumannii
Keywords: مدل سازی پروتئین; Acinetobacter baumannii; Hypermutator; MutS; MutL; Protein modeling; Substitution; Protein-ligand docking;
Structural characterization of the α-mating factor prepro-peptide for secretion of recombinant proteins in Pichia pastoris
Keywords: مدل سازی پروتئین; Pichia pastoris; Recombinant expression; Secretion leader; Alpha mating factor; Circular dichroism; Protein modeling; Knob socket; CD; circular dichroism; MATα; alpha mating factor; HRP; horseradish peroxidase;
Sequencing and molecular modeling identifies candidate members of Caliciviridae family in bats
Keywords: مدل سازی پروتئین; Calicivirus; Bat; Virus; Protein modeling; Hungary; Daubenton's bat; Serotine bat; Europe
A novel pH-stable, endoglucanase (JqCel5A) isolated from a salt-lake microorganism, Jonesia quinghaiensis
Keywords: مدل سازی پروتئین; Protein modeling; Site-directed mutagenesis; Cellulases; Recombinant endoglucanase gene; Catalytic domain of glycoside hydrolase; Carbohydrate-binding module; High pH stability; Tolerance to deleterious chemicals; Tolerance to heavy metals; Tolerance to d
A novel mutation in FRMD7 causes X-linked idiopathic congenital nystagmus in a North Indian family
Keywords: مدل سازی پروتئین; Idiopathic congenital nystagmus; FRMD7; Missense mutation; Protein modeling; Hydrophobic pocket; Intra-domain interactions;
Molecular characterization of the puroindoline-a and b alleles in synthetic hexaploid wheats and in silico functional and structural insights into Pina-D1
Keywords: مدل سازی پروتئین; Puroindoline a (Pina-D1) gene; Allelic diversity; Protein modeling; Grain hardness; Synthetic hexaploid wheat
Molecular cloning, characterization and expression profile of a glutathione peroxidase-like thioredoxin peroxidase (TPxGl) of the rodent malaria parasite Plasmodium berghei
Keywords: مدل سازی پروتئین; Malaria; Plasmodium berghei; Glutathione peroxidase-like; Enzymatic activity; Ookinete; Cellular expression; Protein modeling;
Protein structure prediction guided by crosslinking restraints - A systematic evaluation of the impact of the crosslinking spacer length
Keywords: مدل سازی پروتئین; LC-MS; liquid chromatography-mass spectrometry; SSE; secondary structure element; Crosslinking; Protein structure prediction; De novo folding; Mass spectrometry; Protein modeling;
Multiple nucleophilic elbows leading to multiple active sites in a single module esterase from Sorangium cellulosum
Keywords: مدل سازی پروتئین; Nucleophilic elbow; Esterase; Protein modeling; Active sites;
Bioinformatics analyses provide insight into distant homology of the Keap1-Nrf2 pathway
Keywords: مدل سازی پروتئین; ADT; AutoDock Tools; ARE; antioxidant response element; BLAST; Basic Local Alignment Search Tool; DHSP; Distant Homology Search Pipeline; NTMT; NCBI Taxonomy Mapping Tool; HMM; Hidden Markov Model; HMMER3; HMM-based utility version 3; Keap1; Kelch-like EC
WDR72 models of structure and function: A stage-specific regulator of enamel mineralization
Keywords: مدل سازی پروتئین; Amelogenesis imperfecta (AI); Wdr72 knockout mouse; Hypomaturation; Vesicle trafficking; Protein modeling; Maturation-stage ameloblasts
A dramatic lung cancer course in a patient with a rare EGFR germline mutation exon 21 V843I: Is EGFR TKI resistance predictable?
Keywords: مدل سازی پروتئین; EGFR rare mutations; Germline mutations; Cancer propensity; Protein modeling; Drug affinity;
Cloning and functional analysis of the ecdysteroid receptor complex in the opossum shrimp Neomysis integer (Leach, 1814)
Keywords: مدل سازی پروتئین; Neomysis integer; Endocrine-disrupting chemical; Nuclear hormone receptor; Ecdysteroid receptor; Retinoid-X-receptor; Heterologous expression; Heterodimerization; Gal4; Protein modeling; Shrimp exposure assay; Ecdysone agonist; Tebufenozide; Crangon crang
Activity of chalcones derived from 2,4,5-trimethoxybenzaldehyde against Meloidogyne exigua and in silico interaction of one chalcone with a putative caffeic acid 3-O-methyltransferase from Meloidogyne incognita
Keywords: مدل سازی پروتئین; Nematicide; Root-knot nematode; (2E)-1-(4′-Nitrophenyl)-3-(2,4,5-trimethoxyphenyl)prop-2-en-1-one; Meloidogyne; Protein modeling; Chalcone
Accelerating knowledge-based energy evaluation in protein structure modeling with Graphics Processing Units
Keywords: مدل سازی پروتئین; Knowledge-based Energy; Protein modeling; GPU; Symmetric NN-body Problem
Analysis of the stabilities of hexameric amyloid-β(1–42) models using discrete molecular dynamics simulations
Keywords: مدل سازی پروتئین; Aβ; Hexamer; Discrete molecular dynamics; Protein modeling; Stability; Amyloid
Molecular model of hexokinase binding to the outer mitochondrial membrane porin (VDAC1): Implication for the design of new cancer therapies
Keywords: مدل سازی پروتئین; Hexokinase; VDAC1; Mitochondrial outer membrane permeabilization; Protein modeling; Docking simulations; Apoptosis; Cancer;
Molecular cloning and biochemical characterization of a myotoxin inhibitor from Bothrops alternatus snake plasma
Keywords: مدل سازی پروتئین; Phospholipase A2; Myotoxin inhibitor; cDNA; Protein modeling; Molecular dynamics; Bothrops alternatus; Snake plasma;
Analysis of a shortened form of human carbonic anhydrase VII expressed in vitro compared to the full-length enzyme
Keywords: مدل سازی پروتئین; Carbonic anhydrase; Immunohistochemistry; Protein modeling; Recombinant protein
3-D Model of the bee venom acid phosphatase: Insights into allergenicity
Keywords: مدل سازی پروتئین; Honeybee venom; Allergen; Acid phosphatase; Protein modeling;
Design and synthesis of 4-methoxyphenylacetic acid esters as 15-lipoxygenase inhibitors and SAR comparative studies of them
Keywords: مدل سازی پروتئین; Methylenation; SLO; Protein modeling; Docking; 15-HLO
Mutational analysis and a structural model of methyl-directed restriction enzyme Mrr
Keywords: مدل سازی پروتئین; Escherichia coli; Mrr; Restriction; Mutagenesis; Protein modeling; High pressure
Site-directed mutagenesis of the conserved Ala348 and Gly350 residues at the putative active site of Bacillus kaustophilus leucine aminopeptidase
Keywords: مدل سازی پروتئین; Leucine aminopeptidase; Bacillus kaustophilus; Protein modeling; Site-directed mutagenesis; Tryptophan emission fluorescence; Circular dichroism
Design and synthesis of eugenol derivatives, as potent 15-lipoxygenase inhibitors
Keywords: مدل سازی پروتئین; 4-Allyl-2-methoxyphenol; 15-HLOa; 15-HLOb; Protein modeling; Soybean lipoxygenase; Docking
Sequence reversed peptide from CaMKK binds to calmodulin in reversible Ca2+-dependent manner
Keywords: مدل سازی پروتئین; Calmodulin; Sequence reverse; Calmodulin-binding peptide; Calmodulin-dependent protein kinase kinase; Ca2+-dependent binding; Protein modeling; Calmodulin affinity chromatography;
Tissue-specific expression and molecular modeling of cytosolic manganese superoxide dismutases from the white shrimp Litopenaeus vannamei
Keywords: مدل سازی پروتئین; Antioxidant; Cytosolic MnSODs; Crustacean; Differential expression; Protein modeling;
Continuous representations of proteins: Construction of coordinate models from curvature profiles
Keywords: مدل سازی پروتئین; Curvature; Torsion; Polyhelix; Protein folds; Protein modeling
Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length
Keywords: مدل سازی پروتئین; hnRNPK; Immunoprecipitation; Casein kinases; Phosphorylation; Protein modeling; Mass spectrometry
Hydrophobic cluster analysis and modeling of the human Rh protein three-dimensional structures
Keywords: مدل سازی پروتئین; Hydrophobic cluster analysis; Protein modeling; Rh blood group; Rh glycoproteins; Ammonium transport; Amt/Mep/Rh superfamilyAmas hydrophobes; Modélisation protéique; Rh; Groupes sanguins; Glycoprotéines Rh; Transport d'amonium; Superfamille Amt/Mep/Rh
Origin, distribution and 3D-modeling of Gr-EXPB1, an expansin from the potato cyst nematode Globodera rostochiensis
Keywords: مدل سازی پروتئین; Expansin; Plant parasitic nematode; Horizontal gene transfer; Protein modeling; Cell wall modifying proteins
Structural and active site analysis of plasmepsins of Plasmodium falciparum: Potential anti-malarial targets
Keywords: مدل سازی پروتئین; Plasmepsins; Protein modeling; Structural deviations; Loops; Ligand binding; Interactions and substrate specificity;
Model of the TBP-TFIIB Complex from Plasmodium falciparum: Interface Analysis and Perspectives as a New Target for Antimalarial Design
Keywords: مدل سازی پروتئین; Antimalarials; Drug design; Protein modeling; Protein-protein interaction; Transcription;