Quantitative proteomic analysis of yeast DNA replication proteins
Keywords: سیلک; Quantitative proteomics; SILAC; Chromatin; Chromatin preparation; DNA replication;
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Beyond hairballs: The use of quantitative mass spectrometry data to understand protein-protein interactions
Keywords: سیلک; AP-MS; affinity purification coupled to mass spectrometry; Y2H; yeast two hybrid; TAP; Tandem Affinity Purification; QconCAT; quantification concatemer; STRIPAK; STRiatin Interacting Phosphatase And Kinase; LUMIER; luminescence-based mammalian interactome
Kidney proteome responses in the teleost fish Paralichthys olivaceus indicate a putative immune response against Streptococcus parauberis
Keywords: سیلک; LC; liquid chromatography; MS; mass spectrometry; UPLC; ultra performance liquid chromatography; CDC48; cell division cycle 48; EST; expressed sequence tag; iTRAQ; isobaric tag for relative and absolute quantitation; SILAC; stable isotope labeling by amin
Identification and quantification of newly synthesized proteins translationally regulated by YB-1 using a novel Click–SILAC approach
Keywords: سیلک; Click–SILAC; Translation; Click chemistry; SILAC; YB-1; Newly synthesized proteins
Detecting outlier peptides in quantitative high-throughput mass spectrometry data
Keywords: سیلک; LC-MS/MS; SILAC; MaxQuant; ANOVA; Outlier peptides
The application of modular protein domains in proteomics
Keywords: سیلک; pTyr; phosphotyrosine; PTM; post-translational modification; MS; mass spectrometry; PSSM; position specific scoring matrix; SH2; Src homology 2; SH3; Src homology 3; WW; tryptophan tryptophan; PDZ; post synaptic density protein 95-disks large protein 4-zo
Improved characterization of the insulin secretory granule proteomes
Keywords: سیلک; ISG; Insulin secretory granules; SILAC; Stable Isotope Labeling with Amino acids in Cell culture; TGN; Trans-Golgi network; PC1/2; Prohormone convertase 1/2; SNAREs; Soluble NSF attachment protein receptors; Ã-cells; Subcellular fractionation; Insulin se
Identification of a potential biomarker panel for the intake of the common dietary trans fat elaidic acid (transâ9-C18:1)
Keywords: سیلک; AUC; area under curve; CV; coefficient of variance; CVD; cardiovascular disease; DIGE; difference in gel electrophoresis; FA; fatty acid; FFA; free fatty acid; GEMA; gene expression microarray analysis; HepG2-SF; HepG2-serum free; HSA; human serum albumin
Effective correction of experimental errors in quantitative proteomics using stable isotope labeling by amino acids in cell culture (SILAC)
Keywords: سیلک; SILAC; Incomplete isotope labeling; Arginine-to-proline conversion; Label-swap replication; Receptor
Mapping cyclosporine-induced changes in protein secretion by renal cells using stable isotope labeling with amino acids in cell culture (SILAC)
Keywords: سیلک; Cyclosporine; Kidney; Toxicity; SILAC; Secretome; Proteomics
Dual phosphoproteomics and chemical proteomics analysis of erlotinib and gefitinib interference in acute myeloid leukemia cells
Keywords: سیلک; Phosphoproteomics; Signal transduction; Chemical proteomics; SILAC; Kinase inhibitor; Acute myeloid leukemia
Quantitative proteomic analysis of human osteoblast-like MG-63 cells in response to bioinert implant material titanium and polyetheretherketone
Keywords: سیلک; Biomaterial; Biocompatibility; SILAC; Polyetheretherketone (PEEK); Titanium; Proteomics
Proteomic analysis of podosome fractions from macrophages reveals similarities to spreading initiation centres
Keywords: سیلک; Actin; Adhesion; Adhesome; Invadopodia; Mass spectrometry; Macrophages; Podosomes; RNA binding proteins; SILAC; Spreading initiation centres
Comprehensive proteomic analysis of host cell lipid rafts modified by HBV infection
Keywords: سیلک; 2DE; 2 dimensional polyacrylamide gel electrophoresis; CAV1; caveolin 1; DMEM; Dulbecco's modified eagle medium; DMSO; dimethyl sulfoxide; DRMs; detergent-resistant membranes; ER; endoplasmic reticulum; ESI-Q-TOF; electrospray ionization quadrupole time-o
Identification and Functional Characterization of pVHL-Dependent Cell Surface Proteins in Renal Cell Carcinoma
Keywords: سیلک; ASAP ratio; automated statistical analysis on protein ratio; ccRCC; clear cell renal cell carcinoma; ChIP; chromatin immunoprecipitation; CSC; cell surface capturing; DMOG; dimethyloxalyl glycine; HIF; hypoxia-inducible factor; HRE; hypoxia response eleme
Extracting gene function from protein-protein interactions using Quantitative BAC InteraCtomics (QUBIC)
Keywords: سیلک; QUBIC; Protein-protein interaction; Quantitative mass spectrometry; Proteomics; BAC transgeneomics; Label-free quantification; SILAC;
A solid phase extraction-based platform for rapid phosphoproteomic analysis
Keywords: سیلک; Proteomics; Phosphorylation; Chromatography/methods; Mass spectrometry/methods; Phosphoproteomics; ACN; acetonitrile; ETD; electron transfer dissociation; IMAC; immobilized metal ion affinity chromatography; SCX; strong cation exchange chromatography; m/z
Fc gamma receptor IIb modulates the molecular Grb2 interaction network in activated B cells
Keywords: سیلک; FcγRIIb; fragment crystalline of gamma chain receptor IIb; Grb2; growth factor receptor-bound protein 2; Dok-3; downstream of kinase-3; SHIP; SH2 domain-containing inositol phosphatase; SILAC; stable isotope labeling of amino acids in cell culture; B cel
Analyzing protein-protein interactions by quantitative mass spectrometry
Keywords: سیلک; Protein-protein interactions; SILAC; Mass spectrometry; Pull-down; Immunoprecipitation;
SILAC zebrafish for quantitative analysis of protein turnover and tissue regeneration
Keywords: سیلک; Zebrafish; SILAC; Regeneration; Protein turnover;
The interactome of a PTB domain-containing adapter protein, Odin, revealed by SILAC
Keywords: سیلک; Odin (ANKS1A); Interacting proteins; SILAC; Receptor tyrosine kinase
Identification of novel signaling components in genistein-regulated signaling pathways by quantitative phosphoproteomics
Keywords: سیلک; SILAC; stable isotope labeling by amino acids in cell culture; PTM; post-translational modification; SCX; strong-cation exchange chromatography; RSD; relative standard deviation; RTKs; receptor tyrosine kinases; GPCRs; G-protein-coupled receptors; BCLAF1;
Interleukin-2 signaling pathway analysis by quantitative phosphoproteomics
Keywords: سیلک; IL-2; interleukin-2; SILAC; stable isotope labeling of amino acids in cell culture; IP; immunoprecipitation; pTyr; phosphotyrosine; PTK; protein tyrosine kinase; JAK; Janus Kinase; MAPK; mitogen-activated protein kinase, SHP-2, SH2-containing phosphatase;
Heat shock proteins in oncology: Diagnostic biomarkers or therapeutic targets?
Keywords: سیلک; 2 DE; 2D gel electrophoresis; 2DPAGE; 2D polyacrylamide gel electrophoresis; AIF; Apoptosis inducing factor; Apaf-1; Apoptotic protease activating factor 1; APC; Antigen presenting cell; ASK-1; Apoptosis Signal-regulating Kinase 1; Bag; Bcl-2-associated a
Quantitative proteomic analysis of cyclosporine-induced toxicity in a human kidney cell line and comparison with tacrolimus
Keywords: سیلک; Cyclosporine; Tacrolimus; Proteomics; SILAC; Nephrotoxicity; Cyclophilins;
Identification of BCAP-L as a negative regulator of the TLR signaling-induced production of IL-6 and IL-10 in macrophages by tyrosine phosphoproteomics
Keywords: سیلک; BCAP; Cytokine; LPS; Macrophage; SILAC; TLR
Comparison of surface proteomes of enterotoxigenic (ETEC) and commensal Escherichia coli strains
Keywords: سیلک; SILAC; Escherichia coli; Surface proteins; Vaccine; Proteomics;
Global assessment of protein turnover in recombinant antibody producing myeloma cells
Keywords: سیلک; Proteomics; NS0; Recombinant IgG; Protein turnover; SILAC
Toward Quantitative Proteomics of Organ Substructures: Implications for Renal Physiology
Keywords: سیلک; Kidney; nephron; proteomics; mass spectrometry; SILAC; Orbitrap; COPAS (complex object parametric analyzer and sorter);
Phosphoproteomics in cancer
Keywords: سیلک; SILAC; Protein microarrays; Phosphorylation; Signal transduction
Phosphoproteomic characterization of PYK2 signaling pathways involved in osteogenesis
Keywords: سیلک; SILAC; stable isotope labeling of amino acids in cell culture; Mifepristone; 11β-[p-(Dimethylamino)phenyl]-17β-hydroxy-17-(1-propynyl)estra-4,9-dien-3-one; ICC; immunocytochemistry; MS; mass spectrometry; PYK2; Phosphoproteomics; Osteogenesis; hMSCs; Me
Transcriptome and proteome analysis of Chinese hamster ovary cells under low temperature and butyrate treatment
Keywords: سیلک; Mammalian cell culture; CHO cells; Sodium butyrate; Transcriptome; DNA microarrays; Gene set enrichment; Proteomics; SILAC; Secretion kinetics;
Bioinformatics analysis of mass spectrometry-based proteomics data sets
Keywords: سیلک; Quantitative mass spectrometry; Computational proteomics; Bioinformatics; Systems biology; SILAC; MaxQuant
Identification of c-Src tyrosine kinase substrates in platelet-derived growth factor receptor signaling
Keywords: سیلک; Kinase; Mass spectrometry; Phosphoproteomics; Phosphorylation; Signal transduction; SILAC; c-Src; PDGF;
Ligand-induced Flt3-downregulation modulates cell death associated proteins and enhances chemosensitivity to idarubicin in THP-1 acute myeloid leukemia cells
Keywords: سیلک; Flt3; AML; SILAC; THP-1; Chemotherapy; Apoptosis
Auditory proteomics: Methods, accomplishments and challenges
Keywords: سیلک; 2D-DIGE; two-dimensional-differential gel electrophoresis; MALDI-TOF; matrix assisted laser desorption ionization time of flight; MS; mass spectrometry; IEF; isoelectric focusing; SDS-PAGE; sodium dodecylsulfate polyacrylamide gel electrophoresis; BCA; bi
Proteomic response of human neuroblastoma cells to azaspiracid-1
Keywords: سیلک; Azaspiracid-1; Neuroblastoma; Energy metabolism; Cytoskeleton; SILAC; Quantitative proteomics
Identification of cognate host targets and specific ubiquitylation sites on the Salmonella SPI-1 effector SopB/SigD
Keywords: سیلک; SILAC; Proteomics; Protein–protein interaction
Use of SILAC for exploring sheddase and matrix degradation of fibroblasts in culture by the PIII SVMP atrolysin A: Identification of two novel substrates with functional relevance
Keywords: سیلک; Snake venom metalloproteinases; SILAC; Sheddase; Annexin V; Collagen VI; Extracellular matrix;
A review of quantitative methods for proteomic studies
Keywords: سیلک; Proteomics; Mass spectrometry; 2-D gel electrophoresis; Stable isotopes relative abundance; Absolute abundance; Metabolic labeling; SILAC; O-18 labeling; ICAT; GIST; iTRAQ; AQUA; NBS
Quantitative proteomics to study mitogen-activated protein kinases
Keywords: سیلک; Protein quantitation; SILAC; Mass spectrometry; Phosphorylation; Stable isotope labeling
Proteomic resources: Integrating biomedical information in humans
Keywords: سیلک; 2D; two dimensional; BIND; biomolecular interaction network database; CDART; conserved domain architecture retrieval tool; CDD; conserved domain database; CGAP; cancer genome anatomy project; DAS; distributed annotation system; DIGE; difference in gel ele
The Use of Proteomics in Urological Research
Keywords: سیلک; Prostate; Bladder; Renal; Proteomic; 2D-PAGE; Mass spectrometry; SELDI-TOF-MS; ESI-MS/MS; ICAT; SILAC;
The interaction between HIF-1 and AP-1 transcription factors in response to low oxygen
Keywords: سیلک; AEC; aortic endothelial cell; bFGF; basic fibroblast growth factor; cAMP; cyclic adenosine 3â²,5â²-monophosphate; CKI; cyclin-dependent kinase inhibitor; CRY1; cryptochrome 1; CYP3A6; cytochrome p450 oxidase 3A6; DEC1; deleted in esophageal cancer 1; 4E