کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
502577 863712 2010 15 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
GROW: A gradient-based optimization workflow for the automated development of molecular models
موضوعات مرتبط
مهندسی و علوم پایه شیمی شیمی تئوریک و عملی
پیش نمایش صفحه اول مقاله
GROW: A gradient-based optimization workflow for the automated development of molecular models
چکیده انگلیسی

The concept, issues of implementation and file formats of the GRadient-based Optimization Workflow for the Automated Development of Molecular Models ‘GROW’ (version 1.0) software tool are described. It enables users to perform automated optimizations of force field parameters for atomistic molecular simulations by an iterative, gradient-based optimization workflow. The modularly constructed tool consists of a main control script, specific implementations and secondary control scripts for each numerical algorithm, as well as analysis scripts. Taken together, this machinery is able to automatically optimize force fields and it is extensible by developers with regard to further optimization algorithms and simulation tools. Results on nitrogen are briefly reported as a proof of concept.

ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Computer Physics Communications - Volume 181, Issue 3, March 2010, Pages 499–513
نویسندگان
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