ComplexQuant: High-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS

► Integration of multiple database search tools in modular framework ► Label free quantification of proteins in large fractionation experiments ► Exhaustive label free LC/MS/MS shotgun profiling for endogenous protein complexes ► Performance comparable to MaxQuant is reported on large datasets.