کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
8746980 | 1593417 | 2018 | 5 صفحه PDF | دانلود رایگان |
عنوان انگلیسی مقاله ISI
Identification and genetic characterization of bovine enterovirus by combination of two next generation sequencing platforms
ترجمه فارسی عنوان
شناسایی و شناسایی ژنتیکی انتروویروس گاو با ترکیب دو سیستم توالی نسل بعدی
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کلمات کلیدی
موضوعات مرتبط
علوم زیستی و بیوفناوری
ایمنی شناسی و میکروب شناسی
ویروس شناسی
چکیده انگلیسی
Prompt and accurate diagnosis is warranted for infectious diseases of domestic animals which may have a significant impact on animal production or clinical practice. In this study, the identification and genetic characterization of a bovine enterovirus (BEV) strain isolated from a calf with diarrhea, are described. Two different next generation sequencing platforms were employed. Shotgun metagenomic accomplished by MinION sequencing (Oxford Nanopore Technologies) allowed the identification of BEV RNA from a cell-culture isolate. BEV was then confirmed by a specific real time RT-PCR assay. To achieve the whole genome of this isolate, sequence reads obtained by MinION were coupled with those originating from NextSeq500 (Illumina). Genomic relatedness and phylogeny with extant BEV strains is also reported. Overall, this manuscript highlights the use of the portable MinION sequence technology as a tool for support diagnostics in veterinary practice.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Journal of Virological Methods - Volume 260, October 2018, Pages 21-25
Journal: Journal of Virological Methods - Volume 260, October 2018, Pages 21-25
نویسندگان
Maria Serena Beato, Maurilia Marcacci, Eliana Schiavon, Luciano Bertocchi, Marco Di Domenico, Alessia Peserico, Monica Mion, Guendalina Zaccaria, Lara Cavicchio, Iolanda Mangone, Elena Soranzo, Claudio Patavino, Cesare Cammà , Alessio Lorusso,