Keywords: سطح دسترسی قابل دسترس; ASA; accessible surface area; CD; circular dichroism; EA; erucic acid; FAs; fatty acids; ÎH; enthalpy; HSA; human serum albumin; Km; Michaelis-Menten constant; λmax; wavelength maxima; MRE; mean residue ellipticity; Vmax; maximum velocity; SA; serum alb
مقالات ISI سطح دسترسی قابل دسترس (ترجمه نشده)
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Keywords: سطح دسترسی قابل دسترس; Osmolytes; Methylamines; Protein stabilization; Accessible surface area; Gibbs free energy;
Keywords: سطح دسترسی قابل دسترس; Bioethanol; Digestate; Furans; Inhibition; Pretreatment; Pyrolysis; 5-HMF; Hydroxymethylfurfural; HPLC; High Pressure Liquid Chromatography; HRT; Hydraulic Retention Time; OLR; Organic Loading Rate; SA; Accessible Surface Area; TS; Total Solids; Vmi; Micr
Keywords: سطح دسترسی قابل دسترس; Osmolytes; Methylamines; Protein stabilization; Accessible surface area; Gibbs free energy
Keywords: سطح دسترسی قابل دسترس; Ceria; Soot-catalyst contact points; Accessible surface area; Soot oxidation; Nanostructured ceria; Nanocatalysts;
Keywords: سطح دسترسی قابل دسترس; Accessible surface area; Protein structure; Energy function; Regression; Benchmark; Decoysets;
Keywords: سطح دسترسی قابل دسترس; Mnemiopsin; Activity; Thermal stability; Local fluctuation; Accessible surface area
Availability of NHS-biotin labeling to identify free protein lysine revealed by experiment and MD simulation
Keywords: سطح دسترسی قابل دسترس; Lysine; Chemical modification; MALDI-TOF MS; Molecular dynamics; Pyrococcus horikoshii; Protein crystallization; ABC; ammonium bicarbonate; ASA; accessible surface area; SER; surface entropy reduction;
RBSURFpred: Modeling protein accessible surface area in real and binary space using regularized and optimized regression
Keywords: سطح دسترسی قابل دسترس; Accessible surface area; PSEE; Protein structure; Relative solvent accessibility; Metaheuristics;
The histidine phosphocarrier protein, HPr, binds to the highly thermostable regulator of sigma D protein, Rsd, and its isolated helical fragments
Keywords: سطح دسترسی قابل دسترس; Binding; Circular dichroism; Fluorescence; Histidine-phosphocarrier-protein; Isothermal titration calorimetry; NMR; Thermostability; ANS; 8-naphthalene-1-sulfonic acid; ASA; accessible surface area; BLI; biolayer interferometry; CD; circular dichroism; DL
Tracking the amyloidogenic core of IAPP amyloid fibrils: Insights from micro-Raman spectroscopy
Keywords: سطح دسترسی قابل دسترس; hIAPP; human IAPP; rIAPP; rat IAPP; APRs; aggregation-prone regions; STEM; scanning-transmission electron microscopy; ssNMR; solid-state Nuclear Magnetic Resonance; RMSF; root mean square fluctuation; ASA; accessible surface area; TERS; Tip-Enhanced Raman
The Lyssavirus glycoprotein: A key to cross-immunity
Keywords: سطح دسترسی قابل دسترس; RABV; Rabies virus; G protein; glycoprotein; PEP; Post-exposure prophylaxis; RIG; Anti-rabies immunoglobulin; HRIG; Human anti-rabies immunoglobulins; ERIG; Equine anti-rabies immunoglobulins; mAbs; Monoclonal antibodies; WHO; World Health Organization; V
Crystal structure of the first WW domain of human YAP2 isoform
Keywords: سطح دسترسی قابل دسترس; YAP; Yes tyrosine kinase Associated Protein; IPTG; isopropyl-β-thio-d-galactopyranoside; PRM; proline rich motif; MR; molecular replacement; ASA; accessible surface area; NDSB; non-detergent sulfobetaine; MBCD; methyl β-cyclodextrin; WW domain; Crystal
A structural insight into the inhibitory mechanism of an orally active PI3K/mTOR dual inhibitor, PKI-179 using computational approaches
Keywords: سطح دسترسی قابل دسترس; PI3K; phosphatidylinositide 3-kinase; PIP2; phosphatidylinositol-4,5-bisphosphate; PIP3; phosphatidylinositol-3,4,5-trisphosphate; mTOR; mammalian target of rapamycin; mTORC1; mTOR complex 1; mTORC2; mTOR complex 2; ASA; accessible surface area; ÎASA; lo
Location and binding mechanism of an ESIPT probe 3-hydroxy-2-naphthoic acid in unsaturated fatty acid bound serum albumins
Keywords: سطح دسترسی قابل دسترس; Oleic acid; Proteins; Anisotropy; Energy transfer; Triplet state; Accessible surface area
Thermal stability of matrix protein from Newcastle disease virus
Keywords: سطح دسترسی قابل دسترس; APS; ammonium persulfate; ASA; accessible surface area; DSC; differential scanning calorimetry; NDV; Newcastle disease virus; TEMED; N,N,Nâ²,Nâ²-tetramethyl-ethylenediamine.; Newcastle disease virus matrix protein; Thermal stability; Structural-based st
MOFomics: Computational pore characterization of metal–organic frameworks
Keywords: سطح دسترسی قابل دسترس; Metal–organic framework; Zeolitic imidazolate framework; Pore characterization; Accessible volume; Accessible surface area
An analysis of B-cell epitope discontinuity
Keywords: سطح دسترسی قابل دسترس; ASA; accessible surface area; PDB; Protein Data Bank; Antigen; Antibody; Epitope; Structural epitope; Functional epitope;
Algorithms and tools for high-throughput geometry-based analysis of crystalline porous materials
Keywords: سطح دسترسی قابل دسترس; Largest free sphere; Largest included sphere; Accessible surface area; Accessible volume; Channel dimensionality
Thermodynamic and structural analysis of homodimeric proteins: Model of β-lactoglobulin
Keywords: سطح دسترسی قابل دسترس; N; native state; D; unfolded state; ASA; accessible surface area; PPIs; protein-protein interactions; ÎHvH; van't Hoff enthalpy change; ÎHcal; calorimetric enthalpy change; ÎHD; unfolding enthalpy change; ÎHn; association enthalpy change; n; oligomeri
Structural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus
Keywords: سطح دسترسی قابل دسترس; Archaeal short-chain alcohol dehydrogenase; X-ray structure; Thermostability; Halotolerance and solvent tolerance; Surface ion pairs; TsAdh319; alcohole dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus; SDR; short-chain dehydrogena
Interaction of multitryptophan protein with drug: An insight into the binding mechanism and the binding domain by time resolved emission, anisotropy, phosphorescence and docking
Keywords: سطح دسترسی قابل دسترس; Lifetime; Triplet state; Anisotropy; Energy transfer; Accessible surface area; Binding mechanism
Glycine amide shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Keywords: سطح دسترسی قابل دسترس; Glycine amide; Crystal structure; Lysozyme; Protein aggregation; Accessible surface area
Acidic residue modifications restore chaperone activity of β-casein interacting with lysozyme
Keywords: سطح دسترسی قابل دسترس; ANS; 8-anilino-1-naphthalenesulfonic acid; DTT; dithiothreiotol; WRK; Woodward's reagent K; EP; electrostatic potential; ASA; accessible surface area; Modified β-casein; Lysozyme; Hydrophobicity; Woodward's Reagent K; Electrostatic potential; Accessible
Energetics of ligand binding to human glutathione transferase A1-1: Tyr-9 associated localisation of the C-terminal helix is ligand-dependent
Keywords: سطح دسترسی قابل دسترس; α9; C-terminal helix-9 of GSTA1-1; ASA; accessible surface area; ÎCp,calc; the calculated (predicted) change in heat capacity; ÎCp,obs; the observed (experimental) change in heat capacity; EA; ethacrynic acid; G-site; glutathione binding site; GSH; red
Folding kinetic pathway of phosphofructokinase-2 from Escherichia coli: A homodimeric enzyme with a complex domain organization
Keywords: سطح دسترسی قابل دسترس; Phosphofructokinase; Folding pathway; Subunit association; Bimolecular domain; Ribokinase-like family; Subunit interface; Folding kinetics; Pfk-2; phosphofructokinase-2; GdnHCl; guanidine hydrochloride; DTT; dithiotreitol; CD; circular dichroism scpectros
A few low-frequency normal modes predominantly contribute to conformational responses of hen egg white lysozyme in the tetragonal crystal to variations of molecular packing controlled by environmental humidity
Keywords: سطح دسترسی قابل دسترس; ASA; accessible surface area; ERH; equilibrium relative humidity; H-bond; hydrogen bond; HEWL; hen egg white lysozyme; RH; relative humidity; r.m.s.; root-mean-square; TLS; translation-libration-screw; Conformational change; Humidity control; Normal mode
ATP hydrolysis at one of the two sites in ABC transporters initiates transport related conformational transitions
Keywords: سطح دسترسی قابل دسترس; ABC; ATP Binding Cassette; NBD; nucleotide binding domain; TMD; transmembrane domain; ED; essential dynamics; ASA; accessible surface area; ABC transporter; Molecular dynamic; Membrane bilayer; Multi-drug resistance; Constant contact model;
Molecular mechanism of interaction between norfloxacin and trypsin studied by molecular spectroscopy and modeling
Keywords: سطح دسترسی قابل دسترس; Norfloxacin; Trypsin; Fluorescence quenching; UV–vis spectroscopy; Molecular modeling; Accessible surface area
Semi-rational chemical modification of endoinulinase by pyridoxal 5′-phosphate and ascorbic acid
Keywords: سطح دسترسی قابل دسترس; Endoinulinase; Pyridoxal 5′-phosphate; Accessible surface area; Ascorbic acid; Chemical modification
Nucleotide dependent cysteine reactivity of hGBP1 uncovers a domain movement during GTP hydrolysis
Keywords: سطح دسترسی قابل دسترس; Ellman’s reagent; DTNB; Accessible surface area; Protein domain
Sequence-dependence and prediction of nucleotide solvent accessibility in double stranded DNA
Keywords: سطح دسترسی قابل دسترس; Ade; Adenine; ASA; Accessible surface area; Cyt; Cytosine; Cor; Coefficient of correlation; Gua; Guanine; MAE; Mean absolute error; Thy; Thymine; DNA conformation; Solvent accessibility; Sequence dependent conformation; Prediction;
Importance of non-conserved distal carboxyl terminal amino acids in two peptidases belonging to the M1 family: Thermoplasma acidophilum Tricorn interacting factor F2 and Escherichia coli Peptidase N
Keywords: سطح دسترسی قابل دسترس; C-Terminal domain; Cytosolic protein degradation; Enzyme solubility and function; Metallopeptidase; M1 family; aa; amino acids; AAP1; alanine/arginine aminopeptidase; AMC; 7-amino-4-methylcoumarin; ANS; 8-anilino 1-napthalene sulphonic acid; ARM; Armadill
Probing protein surface accessibility of amino acid substitutions using hydrophobic interaction chromatography
Keywords: سطح دسترسی قابل دسترس; Hydrophobic interaction chromatography; Green fluorescent protein; Hemoglobin; Hydrophobicity scales; Accessible surface area; Surface properties
Fluorescence, anisotropy and docking studies of proteins through excited state intramolecular proton transfer probe molecules
Keywords: سطح دسترسی قابل دسترس; Fluorescence; Hydroxy naphthoic acids; Globular proteins; Excited state proton transfer; Singlet state lifetime; Rotational correlation time; Accessible surface area;
Self-contacts in Asx and Glx residues of high-resolution protein structures: Role of local environment and tertiary interactions
Keywords: سطح دسترسی قابل دسترس; Accessible surface area; Intra-residue hydrogen bond; Local hydrophobicity; Secondary structure preferences; Multiple interactions; Carbonyl contacts
Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli
Keywords: سطح دسترسی قابل دسترس; Protein evolution; Accessible surface area; Helix propensity; Protein expression hosts
Membrane protein assembly patterns reflect selection for non-proliferative structures
Keywords: سطح دسترسی قابل دسترس; TM; transmembrane; LASA; lipid accessible surface area; ASA; accessible surface area; CA; contact area; Membrane protein; Protein folding; Quaternary protein structure; Classification;
Prediction of the deleterious nsSNPs in ABCB transporters
Keywords: سطح دسترسی قابل دسترس; SNP; single nucleotide polymorphism; nsSNPs; non-synonymous SNPs; ABCB; ATP-binding cassette B; RPLS; ridge partial least square; LDA; linear discriminant analysis; 3D; 3-dimensional; SIFT; sorting intolerant from tolerant; ÎÎG; relative stability chang
Binding studies of hydantoin racemase from Sinorhizobium meliloti by calorimetric and fluorescence analysis
Keywords: سطح دسترسی قابل دسترس; ITC; Isothermal titration calorimetry; MTEH; Methylthioethyl hydantoin; SmeHyuA; hydantoin racemase from Sinorhizobium meliloti CECT 4114; ASA; Accessible surface area; HEPES; N-2-hydroxyethylpiperazine-Nâ²-2-ethanesulfonic acid; ACES; N-(2-Acetamido)-2-
Evaluation of carboxylic acid-induced conformational transitions of β-lactoglobulin: Comparison of the alcohol effects on β-lactoglobulin
Keywords: سطح دسترسی قابل دسترس; ASA, accessible surface area; PFPA, pentafluoropropionic acid; Trp, tryptophan; Cm, midpoint concentration; β-LG, β-lactoglobulin; ΔG, Gibbs free energyβ-Lactoglobulin; Unfolding; Carboxylic acid; Alcohol; Accessible surface area; Cluster formation
Contribution of Electrostatic Interactions, Compactness and Quaternary Structure to Protein Thermostability: Lessons from Structural Genomics of Thermotoga maritima
Keywords: سطح دسترسی قابل دسترس; thermostability; salt-bridges; accessible surface area; evolution; network analysisCvP, charges versus polar; PDB, Protein Data Bank
Analysis of cation-Ï interactions to the structural stability of RNA binding proteins
Keywords: سطح دسترسی قابل دسترس; Cation-Ï interactions; RNA binding proteins; Accessible surface area;
On the hydration heat capacity change of benzene
Keywords: سطح دسترسی قابل دسترس; Hydration heat capacity change; Reorganization of H-bonds; Two-state Muller's model; Accessible surface area;