Keywords: Transcription; FOXP1; Splicing; CHD8; RBFOX1; Network; Autism; AIS; axon initial segment; AS; alternative splicing; ASD; autism spectrum disorder; ChIP-seq; chromatin immunoprecipitation-sequencing; E/I; excitatory/inhibitory; ESCs; embryonic stem cells;
مقالات ISI (ترجمه نشده)
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Keywords: AGRIS; Arabidopsis Gene Regulatory Information Server; AtcisDB; Arabidopsis thaliana cis-regulatory element database; AtPAN; Arabidopsis thaliana Promoter Analysis Net; AtRegNet; Arabidopsis thaliana regulatory network; AtTFDB; Arabidopsis thaliana transc
Keywords: Asthma; bioinformatics; diisocyanate; electrophoretic mobility shift assay; functional genomics; gene regulation; genetic; histone; isocyanate; luciferase assay; next-generation sequencing; occupational asthma; oligonucleotide; single nucleotide polymorph
Keywords: APC; antigen-presenting cells; ATAC-seq; assay for transposase-accessible chromatin using sequencing; cDC; conventional dendritic cell; ChIP-seq; chromatin immunoprecipitation coupled with DNA sequencing; CTL; cytotoxic T lymphocyte; DC; dendritic cell; L
Keywords: Parkinson's disease; LUHMES; Genetic enhancers; Vesicle transport; Neurogenesis; Differentiation; GWAS; Differential gene expression; RNA-Seq; CHIP-Seq; Risk SNP;
Keywords: 3-MC; 3-methylcholanthrene; Ah; aryl hydrocarbon; AhE; aryl hydrocarbon receptor; AP-1; activator protein-1; ARE; antioxidant response element; ATF4; activating transcription factor 4; β-NF; β-naphthoflavone; β-NF-RE; β-NF-responsive element; β-TRCP;
Keywords: Cell type specific; ChIP-seq; Epigenomics; Postmortem human brain; PsychENCODE; Schizophrenia;
Keywords: Mesenchymal stromal cells; Osteoblast; ChIP-Seq; Gene expression; Chromatin; Epigenomics; Epigenetics;
Keywords: EPI; enhancer-promoter interaction; E-P; enhancer-promoter; 5C; Carbon Copy Chromosome Capture Conformation; ChIA-PET; Chromatin Interaction Analysis by Paired-End Tag Sequencing; FISH; Fluorescence In Situ Hybridization; ChIP-seq; chromatin immunoprecipi
Keywords: BAL; bronchoalveolar lavage; ChIA-PET; chromatin interaction analysis with paired-end tag; ChIP-seq; chromatin inmunoprecipitation and massively parallel sequencing; circ-ncRNA; circulating noncoding RNA; CRC; colorectal cancer; CRISPR-Cas9; clustered, re
Keywords: ABC; ATP binding cassette; BCG; Bacillus Calmette Guérin; ChIP-Seq; chromatin immunoprecipitation-sequencing; CoA; coenzyme A; DAG; diacylglycerol; DAT; diacyl trehalose; DDM; dideoxymycobactin; ESI; electrospray ionization; FT-ICR; Fourier transform ion
Keywords: Atf1; activating transcription factor 1; CBP; CREB binding protein; CCTF; CCCTC-binding factor; CEBP; CCAAT/enhancer-binding protein; ChIP-seq; chromatin immunoprecipitation followed by deep sequencing; 9cRA; 9-cis retinoic acid; Crem; cAMP response eleme
Keywords: 2210010C04Rik; RIKEN cDNA 2210010C04 gene; 5330417C22Rik; RIKEN cDNA 5330417C22 gene; A1AT; alpha1-antitrypsin; Ago1; argonaute RISC catalytic component 1; Amy2a5; amylase 2a5; Amy2b; amylase, alpha 2B; AP1/JUN; jun proto-oncogene; Bmp; bone morphogenetic
Keywords: ChIP-seq; Chromatin; Epigenetics; Gene regulatory network; Genomics; High throughput data; Network analysis; Photoreceptor; Retina; Retinal disease; RNA-Seq; Systems biology; Transcriptome; Vision; Whole exome sequencing; Whole genome sequencing; NGS data
Keywords: Enhancers; Chromatin; Cell separation; ChIP-seq; DNase-seq; Model organism;
Keywords: ChIP-seq; chromatin immunoprecipitation-sequencing; 3C; chromosome conformation capture; ChIA-PET; chromatin interaction analysis by paired-end tag sequencing; STARR-seq; self-transcribing active regulatory region sequencing; Chromatin; Epigenetics; Topol
Keywords: Transcription; Screening; Proteomics; Interactome; Pharmacology; Specificity; Cancer; Genomics; PPID; Protein-protein interaction disruptor; TF; Transcription factor; HMG; High-mobility group; ChIP-seq; Chromatin immunoprecipitation sequencing; GPCR; G pr
Keywords: Systems biology; High throughput genomics; Gene regulatory network; Retinal degeneration; Macular degeneration; Photoreceptor; Inherited blindness; Network medicine; Whole exome sequencing; RNA-seq; ChIP-seq; eQTL; Pathway-based drug discovery; Personaliz
Keywords: Breast cancer; ChIP-seq; Epigenetic modifications; Aromatase inhibitor treatment outcome; Estrogen Receptor
Keywords: MR; mineralocorticoid receptor; DCT; distal convoluted tubule; CD; collecting duct; ChIP-seq; chromatin-immunoprecipitation with deep-sequencing; MBS; MR-binding sequence; Mineralocorticoid receptor; Aldosterone; Distal convoluted tubules; ChIP-seq;
Keywords: Pubchem CID: 444795; Aldh1a2; aldehyde dehydrogenase family 1 member A2; Cdk1; Cyclin-dependent kinase 1, Cdc25, cell division cycle 25; ChIP-seq; chromatin immunoprecipitation followed by next generation sequencing; Crabp1; cellular retinoic acid binding
Keywords: H3K4me3; tri-methylations at histone H3 Lysine 4; ChIP-seq; chromatin immunoprecipitation and sequencing; siRNA; small interference RNA; Chromatin remodeling; Chromatin modifications; Epigenomics; Computational analysis;
Keywords: CD4; cluster of differentiation 4; CoSBI; coherent and shifted bicluster identification; ChIP-chip; chromatin immunoprecipitation coupled with DNA microarray; ChIP-seq; chromatin immunoprecipitation coupled with ultra high-throughput sequencing; DNA; deox
Genomics and transcriptomics to study fruiting body development: An update
Keywords: ChIP-seq; Fruiting body development; Genomics; RNA editing; RNA-seq; Transcriptomics;
Postnatal changes in epigenetic modifications of neutrophils of foals are associated with increased ROS function and regulation of neutrophil function
Keywords: Neutrophils; Neonatal immunity; ChIP-seq; Cytokines; Histone modifications;
ETS transcription factor family member GABPA contributes to vitamin D receptor target gene regulation
Keywords: 1,25(OH)2D3 or 1,25D1α; ,25-dihydroxyvitamin D3; ChIP; chromatin immunoprecipitation; ChIP-seq; ChIP sequencing; CTCF; CCCTC-binding factor; DR3; direct repeat of hexameric binding sites spaced by 3 nucleotides; ETS; E-twenty-six; FAIRE-seq; Formaldehyde
pUL34 binding near the human cytomegalovirus origin of lytic replication enhances DNA replication and viral growth
Keywords: Human cytomegalovirus; UL34; Origin of lytic replication; ChIP-seq; DNA replication;
High MITF Expression Is Associated with Super-Enhancers and Suppressed by CDK7 Inhibition in Melanoma
Keywords: ChIP-seq; chromatin immunoprecipitation sequencing; CTD; carboxy-terminal domain; GI50; concentration at which half maximal inhibition of cell proliferation is achieved; GSEA; gene set enrichment analysis; MITF-hi; high MITF expression level; MITF-lo; low
Lrp6 is a target of the PTH-activated αNAC transcriptional coregulator
Keywords: αNAC; α chain of nascent polypeptide associated complex; PTH; Parathyroid Hormone; PKA; protein kinase A; ChIP; chromatin immunoprecipitation; ChIP-Seq; ChIP-sequencing; LRP6; Low density lipoprotein receptor-Related Protein 6; iPTH; intermittent PTH; P
Effects of the stimuli-dependent enrichment of 8-oxoguanine DNA glycosylase1 on chromatinized DNA
Keywords: 8-oxoG; 8-oxo-7, 8-dihydroguanine; AP; apurinic/apyrimidinic site in DNA; APE1; apurinic/apyrimidinic endonuclease 1; BER; base excision repair; ChIP; chromatin immunoprecipitation assays; ChIP-seq; chromatin immunoprecipitation assays followed by DNA seq
Genome-wide analysis of PDX1 target genes in human pancreatic progenitors
Keywords: iPSC; T2DM; ChIP-seq; PDX1; SNPs; PP; GWAS;
Long noncoding RNAs: Undeciphered cellular codes encrypting keys of colorectal cancer pathogenesis
Keywords: Long noncoding RNAs (lncRNA); Colorectal cancer (CRC); Colorectal cancer associated transcript (CCAT); Cancer-associated region long noncoding RNA (CARLo); MYC-regulated long noncoding RNA (MYCLo); Colorectal Neoplasia Differentially Expressed (CRNDE); CR
The concept of the personal vitamin D response index
Keywords: 1,25(OH)2D3; 1α,25-dihydroxyvitamin D3; 25(OH)D3; 25-hydroxyvitamin D3; ChIP-seq; chromatin immunoprecipitation sequencing; COX8A; cytochrome C oxidase subunit 8A; CYP; cytochrome P450; FAIRE-seq; Formaldehyde-Assisted Isolation of Regulatory Elements se
The impact of VDR expression and regulation in vivo
Keywords: 1,25(OH)2D3; 1,25 dihydroxyvitamin D3; atRA; all trans retinoic acid; BMD; bone mineral density; db-cAMP; dibutyryl cyclic AMP; ChIP; chromatin immunoprecipitation; ChIP-chip; ChIP followed by microarray; ChIP-seq; ChIP followed by sequencing; FGF23; fibr
ChIP-seq analysis reveals alteration of H3K4 trimethylation occupancy in cancer-related genes by cold atmospheric plasma
Keywords: Breast cancer; ChIP-seq; Cold atmospheric plasma; Histones; H3K4me3;
Single sample sequencing (S3EQ) of epigenome and transcriptome in nucleus accumbens
Keywords: High-throughput sequencing; ChIP-seq; RNA-seq; S3EQ;
The impact of the vitamin D-modulated epigenome on VDR target gene regulation
Keywords: 1,25(OH)2D3 or 1,25D; 1α,25-dihydroxyvitamin D3; CD14; CD14 molecule; ChIP; Chromatin immunoprecipitation; ChIP-seq; ChIP sequencing; CLMN; Calmin; CTCF; CCCTC-Binding factor; FAIRE-seq; Formaldehyde-assisted isolation of regulatory elements sequencing;
Chromatin immunoprecipitation and high throughput sequencing of SVCV-infected zebrafish reveals novel epigenetic histone methylation patterns involved in antiviral immune response
Keywords: Zebrafish; SVCV; Histone methylation; ChIP-seq; Innate immunity;
CHD8short, a naturally-occurring truncated form of a chromatin remodeler lacking the helicase domain, is a potent transcriptional coregulator
Keywords: aa; amino acid(s); ASD; autism spectrum disorder; bp; base pair(s); cDNA; DNA complementary to RNA; CHD; Chromodomain-Helicase-DNA binding protein; ChIP; chromatin immunoprecipitation; ChIP-seq; chromatin immunoprecipitation analyzed by deep sequencing; h
The FOXO3-FOXM1 axis: A key cancer drug target and a modulator of cancer drug resistance
Keywords: ABCB1; ATP-binding cassette sub-family B member 1; AML; acute myeloid leukaemia; AMPK; adenosine monophosphate-activated protein kinase; ATM; Ataxia-telangiectasia mutated; AURKA; aurora kinase A; BER; base excision repair; Bim; B-cell lymphoma 2 interact
The expression and function of PAX3 in development and disease
Keywords: ARMS; alveolar rhabdomyosarcoma; BSNS; biphenotypic sinonasal sarcoma; CASTing; cyclic amplification and selection of targets; ChIP-Seq; chromatin immunoprecipitation sequencing; HD; homeodomain; HTH; helix-turn-helix; PAI; N-terminal paired box subdomain
Molecular endocrinology of vitamin D on the epigenome level
Keywords: Vitamin D; Chromatin; Epigenome; ChIP-seq; FAIRE-seq; Chromatin modifying enzymes; PU.1; CTCF;
Class 3 semaphorins are transcriptionally regulated by 1,25(OH)2D3 in osteoblasts
Keywords: 1,25(OH)2D3; 1,25 dihydroxyvitamin D3; AUC; area under the curve; ChIP; chromatin immunoprecipitation; ChIP-seq; ChIP sequencing; NRP; neuropilin; PLXN; plexin; RWD; relative wound density; RXR; retinoid X receptor; Sema3; class 3 semaphorin; TSS; transcr
8-Oxo-7,8-dihydroguanine, friend and foe: Epigenetic-like regulator versus initiator of mutagenesis
Keywords: AP; abasic site; APE1; apurinic/apyrimidinic endoDNase 1; BCL2; B-cell lymphoma 2; BER; base excision repair; CBP; CREB binding protein; ChIP-Seq; chromatin immunoprecipitation assay with sequencing; c-MYC; V-myc avian myelocytomatosis viral oncogene homo
Epigenomic PU.1-VDR crosstalk modulates vitamin D signaling
Keywords: 1,25(OH)2D3 or 1,25D; 1α,25-dihydroxyvitamin D3; ChIP; Chromatin immunoprecipitation; ChIP-seq; ChIP sequencing; CTCF; CCCTC-binding factor; DR3; Direct repeat spaced by 3 nucleotides; DsiRNA; Dicer substrate siRNA; FAIRE-seq; Formaldehyde-assisted isola
Long noncoding RNA LINC01186, regulated by TGF-β/SMAD3, inhibits migration and invasion through Epithelial-Mesenchymal-Transition in lung cancer
Keywords: lncRNAs; long noncoding RNAs; EMT; Epithelial-Mesenchymal-Transition; TGF-β; transforming growth factor β; ChIP-Seq; Chromatin Immunoprecipitation Sequencing; qRT-PCR; quantitative real-time reverse transcription polymerase chain reaction; GSEA; gene se
Loss of transcriptional activation of the potassium channel Kir5.1 by HNF1β drives autosomal dominant tubulointerstitial kidney disease
Keywords: ADTKD-HNF1β; ChIP-seq; HNF1β; hypomagnesemia; Kir4.1; Kir5.1; magnesium; potassium;
Transcriptional Regulation by ATOH1 and its Target SPDEF in the Intestine
Keywords: ATOH1; SPDEF; Transcription; Intestinal Epithelium; Villin-creER; TRE-Spdef; Atoh1GFP; Atoh1Flag; ATOH1; atonal homolog 1; ChIP; chromatin immunoprecipitation; ChIP-seq; chromatin immunoprecipitation sequencing; CRC; colorectal cancer; DBZ; dibenzazepine;
Genome wide features, distribution and correlations of NF-Y binding sites
Keywords: NF-Y; CCAAT box; Transcription regulation; ChIP-Seq;
New insights into cellular cholesterol acquisition: promoter analysis of human HMGCR and SQLE, two key control enzymes in cholesterol synthesis
Keywords: ChIP-seq; chromatin immunoprecipitation-sequencing; DHCR7; 7-dehydrocholesterol reductase; DHCR24; 24-dehydrocholesterol reductase; EMSA; electrophoretic mobility shift assay; FCLPDS; fetal calf lipoprotein-deficient serum; FCS; fetal calf serum; HMGCR; 3