Keywords: Triticum aestivum; Salt tolerance; qRT-PCR; Transcriptome; qPCR; quantitative polymerase chain reaction; SOM; self-organizing mapping; EST; expressed sequence tag; EMS; ethyl methyl sulfonate; RNA-Seq; RNA-Sequence; CDD; conserved domain database; Pfam; p
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Keywords: Purple soot tea; Camellia sinensis; Anthocyanins; MYB transcriptional factor; RNA-Seq analysis; AE; Amplification efficiency; DEG; Differentially expressed gene; FDR; False discovery rate; FPKM; Fragments per kilobase of transcript per million reads; GO;
Keywords: Germination thermoinhibition; Illumina paired-end sequencing; Lettuce seed; Sodium nitroprusside; Transcriptome; ABA; abscisic acid; DEG; different expression gene; GA; gibberellin; GO; Gene Ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes Pathway
Genome-wide identification and analysis of the evolution and expression patterns of the GATA transcription factors in three species of Gossypium genus
Keywords: QTL; quantitative trait locus; FPKM; fragments per kilobase of exon per million fragments mapped; SNP; single nucleotide polymorphisms; qRT-PCR; quantitative real-time PCR; DPA; days post anthesis; SRA; sequence read archive; NCBI; National Center for Bio
Transcriptomics reveals tissue/organ-specific differences in gene expression in the starfish Patiria pectinifera
Keywords: BW; body wall; CE; coelomic epithelium; TF; tube feet; SM; stomach; PC; pyloric caeca; GN; gonad; BUSCO; Benchmarking Universal Single-Copy Orthologs; KOG; EuKaryotic Orthologous Groups; ORFs; open reading frames; NR; non-redundant; GO; gene ontology; KEG
Regulation of trichome development in tobacco by JcZFP8, a C2H2 zinc finger protein gene from Jatropha curcas L.
Keywords: ZFP; zinc finger protein; SEM; scanning electron microscopy; DEG; differentially expressed gene; GO; Gene Ontology database; COG; The database of Clusters of Orthologous Groups of proteins; KOG; The database of Clusters of Protein homology; KEGG; The data
Transcriptome analysis of differentially expressed genes involved in innate immunity following Bacillus thuringiensis challenge in Bombyx mori larvae
Keywords: Bt; Bacillus thuringiensis; DEGs; different expression genes; GO; gene ontology; KOG; euKaryotic Ortholog Groups of proteins; KEGG; Kyoto Encyclopedia of Genes and Genomes Pathway; qRT-PCR; quantitative real-time PCR; proPO; prophenoloxidase; AMPs; antimi
Mapping podophyllotoxin biosynthesis and growth-related transcripts with high elevation in Sinopodophyllum hexandrum
Keywords: asl; above sea level; DEGs; differentially expressed genes; DR; down-regulated; GO; gene ontology; KEGG; Kyoto Encyclopedia of Genes and Genomes; KOG; euKaryotic orthologous groups of proteins; NCBI; National Center for Biotechnology Information; NR; non-
Comparative transcriptome profiling of genes and pathways involved in leaf-patterning of Clivia miniata var. variegata
Keywords: PET; Photosynthetic electron transport; Cmvv; Clivia miniata var. variegata; cpDNA; Chloroplast DNA; CTP; Chloroplast transit peptide; IR; Large inverted repeat; LSC; Large single copy regions; SSC; Small single copy regions; YSs; Yellow stripes of leaves
Digital gene expression analysis in the gills of Ruditapes philippinarum exposed to short- and long-term exposures of ammonia nitrogen
Keywords: DGE; Digital gene expression technology; UIA; un-ionized ammonia nitrogen; NMDA; N-Methyl-d-aspartic acid; DEG; differentially expressed genes; Nr; NCBI non-redundant protein sequences; Nt; NCBI non-redundant nucleotide sequences; Pfam; Protein family; KO
A key structural gene, AaLDOX, is involved in anthocyanin biosynthesis in all red-fleshed kiwifruit (Actinidia arguta) based on transcriptome analysis
Keywords: TY; Tianyuanhong; YF; Yongfengyihao; qRT-PCR; quantitative real-time polymerase chain reaction; DEGs; differentially expressed genes; CTAB; cetyltrimethyl ammonium bromide; BLAST; Basic Local Alignment Search Tool; KOG; Eukaryotic Orthology Groups of prot
Transcriptome analysis and identification of genes associated with flower development in Rhododendron pulchrum Sweet (Ericaceae)
Keywords: qRT-PCR; quantitative real-time PCR; FLC; Flowering Locus; FT; Flowering Locus T; DEGs; differentially expressed genes; CO; CONSTANS; SOC1; SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1; LFY; LEAFY; AP1; APETALA1; CAL; CAULOFLOWER; AG; AGAMOUS; PGRs; Plant g
Identification of candidate genes involved in anthocyanin accumulation in the peel of jaboticaba (Myrciaria cauliflora) fruits by transcriptomic analysis
Keywords: ABA; abscisic acid; ANS/LDOX; anthocyanidin synthase/leucoanthocyanidin dioxygenase; bHLH; basic Helix-Loop-Helix; C4H; cinnamate-4-hydroxylase; CHS; chalcone synthase; CHI; chalcone isomerase; COG; Clusters of Orthologous Groups database; Cytb5; cytochro
Comparative analysis of the neurula transcriptomes of two species of flatfishes: Platichthys stellatus and Paralichthys olivaceus
Keywords: BMP; Bone Morphogenetic Protein; BMPR; Bone Morphogenetic Protein Receptor; BLAST; Basic Local Alignment Search Tool; ERBB; Erb-b2 Receptor Tyrosine Kinase; FGF; Fibroblast Growth Factor; FGFR; Fibroblast Growth Factor Receptor; FZ; Frizzled; HOXB1B; Home
Identification and characterization of novel microRNAs for fruit development and quality in hot pepper (Capsicum annuum L.)
Keywords: DAA; days after anthesis; RISC; RNA-induced silencing complex; KOG; Clusters of Orthologous Groups of proteins; KEGG; Kyoto Encyclopedia of Genes and Genomes; GO; Gene Ontology; AGO; Argonaute; Capsicum annuum; miRNA; Fruit development; Fruit quality; Dee
Comparative transcriptome analysis of ovary and testis reveals potential sex-related genes and pathways in spotted knifejaw Oplegnathus punctatus
Keywords: cDNA; complementary deoxyribonucleic acid; NR; non-redundant protein databases; KOG; eukaryotic orthologus groups; KEGG; kyoto encyclopedia of genes and genomes; GO; gene ontology; qRT-PCR; quantitative real-time polymerase chain reaction; foxl2; forkhead
De novo transcriptome sequencing and analysis of the juvenile and adult stages of Fasciola gigantica
Keywords: Nr; non-redundant protein database; GO; Gene Ontology; KOG; EuKaryotic Orthologous Groups of proteins database; KEGG; Kyoto Encyclopedia of Genes and Genomes; SSR; simple sequence repeat; NCBI; National Center for Biotechnology Information; RPKM; reads pe
Transcriptome comparison reveals insights into muscle response to hypoxia in blunt snout bream (Megalobrama amblycephala)
Keywords: DO; dissolved oxygen; HIFs; hypoxia-inducible factors; ASR; aquatic surface respiration; MS; hypoxia-sensitive; MT; hypoxia-tolerant; LOE; loss of equilibrium; NR; NCBI non-redundant protein sequences; NT; NCBI nucleotide sequences; KEGG; Kyoto Encycloped
Molecular candidates for early-stage flower-to-fruit transition in stenospermocarpic table grape (Vitis vinifera L.) inflorescences ascribed by differential transcriptome and metabolome profiles
Keywords: ACO; 1-aminocyclopropane-1-carboxylate oxidase; AMP; adenosine 5â²-monophosphate; bp; base pair; CW; cell wall; cv; cultivar; DEGs; differentially expressed genes; d; days after 100% cap fall; FDR; false discovery rate; IAA; indole-3-acetic acid; IAMT; i
Transcriptome characterization and SSR discovery in large-scale loach Paramisgurnus dabryanus (Cobitidae, Cypriniformes)
Keywords: GO; gene ontology; SSRs; simple sequence repeats; COG; Clusters of Orthologous Groups; KOG; Eukaryotic Orthologous Groups; KEGG; Kyoto Encyclopedia of Genes and Genomes; QTL; quantitative trait loci; Paramisgurnus dabryanus; Illumina sequencing; Transcrip
Phosphoproteome analysis reveals new drought response and defense mechanisms of seedling leaves in bread wheat (Triticum aestivum L.)
Keywords: ABA; abscisic acid; ABI5; abscisic acid insensitive 5; AFP; ABI5 binding protein; AQP; aquaporin; CDPK; Ca2Â +-dependent protein kinase; GO; gene ontology; KOG; eukaryotic orthologous group; LEA; late embryogenesis abundant protein; MAPK; mitogen-activate
Identification of new molecular markers for assembling the eukaryotic tree of life
Keywords: Phylogeny; New molecular markers; Eukaryotes; KOG; Tree of life; Phylogenetic informativeness
Acanthamoeba castellanii: Gene profile of encystation by ESTs analysis and KOG assignment
Keywords: Acanthamoeba; Encystation; ESTs; KOG;