Keywords: RNA tail; Mitochondrion; Trypanosoma; Uridylation; Polyadenylation; Hidden Markov modelling;
مقالات ISI (ترجمه نشده)
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Keywords: Papillomavirus; HPV; Splicing; Polyadenylation; SR protein; SRSF1; hnRNP; mRNA;
Keywords: ATP analogs; T7 transcription; Polyadenylation; Cellular RNA labeling; Click chemistry
Feasibility study for combination of field-flow fractionation (FFF)-based separation of size-coded particle probes with amplified surface enhanced Raman scattering (SERS) tagging for simultaneous detection of multiple miRNAs
Keywords: Gravitational field-flow fractionation (GrFFF); Surface-enhanced Raman scattering (SERS); MicroRNAs; Size-coded probes; Polyadenylation; Multiplexed detection;
Posttranscriptional actions of triiodothyronine on Tshb expression in TαT1 cells: New insights into molecular mechanisms of negative feedback
Keywords: Triiodothyronine; Tshb; Polyadenylation; TαT1 cells; αVβ3 integrin;
Birth, coming of age and death: The intriguing life of long noncoding RNAs
Keywords: lncRNA; circRNA; RNA processing; eRNA; Transcription; Splicing; Polyadenylation; Subcellular localization;
Adenosine causes read-through into the late region of the HPV16 genome in a guanosine-dependent manner
Keywords: Papillomavirus; HPV16; Nucleoside; Purine; Adenosine; Polyadenylation; Splicing; HuR; ENT1;
Characterization of Staphylococcus epidermidis Polynucleotide phosphorylase and its interactions with ribonucleases RNase J1 and RNase J2
Keywords: Phosphorolysis; Polyadenylation; Ribonuclease activity; RNA degradation; Multi-protein assembly;
Chemosensitivity of human colon cancer cells is influenced by a p53-dependent enhancement of ceramide synthase 5 and induction of autophagy
Keywords: 3â²-UTR; three prime untranslated region; 5-FU; 5-fluorouracil; ANOVA; analysis of variance; AP-1; activator protein 1; AUC; area under the curve; Cer; ceramide; CerS; ceramide synthase; CoA; coenzyme A; CQ; chloroquine; CREB; cAMP response element-bindi
Alternative Polyadenylation Patterns for Novel Gene Discovery and Classification in Cancer
Keywords: APA; alternative polyadenylation; poly(A); polyadenylation; miRNAs; microRNAs; 3â²UTR; 3â² untranslated region; ER; estrogen receptor; SLR; short to long ratio; SAM; statistical analysis of microarrays; CfsSubsetEval; correlation-based feature selection
Improved pFastBac⢠donor plasmid vectors for higher protein production using the Bac-to-Bac® baculovirus expression vector system
Keywords: polh; polyhedrin; pA; polyadenylation; AcMNPV; Autographa californica multiple nucleopolyhedrovirus; HPV; human papillomavirus; UTR; untranslated region; Cis element; Expression vector; Polyadenylation; Protein expression; Untranslated region;
Structural characterization of the yeast CF IA complex through a combination of mass spectrometry approaches
Keywords: Native mass spectrometry; Crosslinking mass spectrometry; Ion mobility-mass spectrometry; Polyadenylation; CF IA;
CommunicationsThe G-Quadruplex-Specific RNA Helicase DHX36 Regulates p53 Pre-mRNA 3â²-End Processing Following UV-Induced DNA Damage
Keywords: CstF; cleavage stimulatory factor complex; nt; nucleotides; DDR; DNA damage response; G4/G4s; G quadruplex(es); RBP; RNA binding protein; UTR; untranslated region; TBP; TATA-binding protein; polyadenylation; genome stability; G-quadruplex ligand; RNA bind
Functional analyses of putative PalS (Palindromic Self-recognition) motifs in bacterial Hfq
Keywords: Hfq; Histone; Nucleosome; Carcinogenesis; Polyadenylation; Amyloid;
Genome-wide profiling of the 3' ends of polyadenylated RNAs
Keywords: 3â² UTR; 3â² untranslated region; 3â²-seq; 3â² end sequencing; APA; alternative polyadenylation; PAS; polyadenylation signal; miRNA; microRNA; A; adenosine; nt; nucleotide; 3â² UTR; 3â² end; APA; Polyadenylation; Genome-wide profiling;
LPS injection reprograms the expression and the 3â² UTR of a CAP gene by alternative polyadenylation and the formation of a GAIT element in Ciona intestinalis
Keywords: Ciona intestinalis; CAP protein; Polyadenylation; GAIT element; LPS;
Long noncoding RNAs: Re-writing dogmas of RNA processing and stability
Keywords: MALAT1; MEN β; NEAT1; Triple helix; tRNA-like; Sno-lncRNA; Circular RNA; CircRNA; Pre-mRNA splicing; RNA stability; Polyadenylation;
Evidence that a threshold of serine/arginine-rich (SR) proteins recruits CFIm to promote rous sarcoma virus mRNA 3â² end formation
Keywords: Rous sarcoma virus; SR proteins; RNA splicing; Polyadenylation; 3â² end processing; CFIm;
U-Insertion/Deletion mRNA-Editing Holoenzyme: Definition in Sight
Keywords: Trypanosoma; mitochondria; RNA editing; guide RNA; polyadenylation; translation
Amino acid residues Leu135 and Tyr236 are required for RNA binding activity of CFIm25 in Entamoeba histolytica
Keywords: Polyadenylation; Cleavage factor Im; Mutagenesis; RNA binding; Entamoeba histolytica; CPSF; Cleavage and Polyadenylation Specificity Factor; CFIm and CFIIm; Cleavage Factor I and II; CstF; Cleavage Stimulatory Factor; IPTG; isopropyl beta-d-thiogalactopyr
The 5â² and 3â² ends of alphavirus RNAs - Non-coding is not non-functional
Keywords: Translation regulation; Polyadenylation; mRNA capping; Viral pathogenesis; miRNAs; Protein-RNA interactions;
RNA-binding proteins in neurodegeneration: Seq and you shall receive
Keywords: RNA binding protein; neurodegeneration; high-throughput sequencing; splicing; polyadenylation
Acetylation of intragenic histones on HPV16 correlates with enhanced HPV16 gene expression
Keywords: HPV16; Papillomavirus; Epigenetics; Histone marks; H3K9Ac; H3K36me3; H3K9me3; H4K20me3; H2BK5me1; HDAC inhibitor; Splicing; Polyadenylation; SR proteins; Hnrnp; Panobinostat; Quisinostat;
Picornavirus RNA polyadenylation by 3Dpol, the viral RNA-dependent RNA polymerase
Keywords: Picornavirales; Picornaviridae; RNA-dependent RNA polymerase; 3Dpol; Reiterative transcription; Polyadenylation;
Short technical reportSLaP mapper: A webserver for identifying and quantifying spliced-leader addition and polyadenylation site usage in kinetoplastid genomes
Keywords: RNA splicing; Trypanosoma; Leishmania; Polyadenylation; RNA-Seq; Kinetoplastida;
SCOPE++: Sequence Classification Of homoPolymer Emissions
Keywords: Polyadenylation; Transcriptome; Hidden Markov Model;
A small portion of plastid transcripts is polyadenylated in the flagellate Euglena gracilis
Keywords: Plastid; EST; Euglenozoa; Polyadenylation; Quantitative PCR; Trans-splicing;
The “tale” of poly(A) binding protein: The MLLE domain and PAM2-containing proteins
Keywords: RNA binding protein; mRNA decay; mRNA translation; Polyadenylation; Translational control; Structural biology;
Structurally diverse low molecular weight activators of the mammalian pre-mRNA 3â² cleavage reaction
Keywords: RNA; RNA processing; Small molecule activators; Polyadenylation; 3â² end formation; Histone code; Naphthalene ring;
Determinants and implications of mRNA poly(A) tail size - Does this protein make my tail look big?
Keywords: Polyadenylation; Poly(A) tail; Deadenylation; Hyperadenylation; mRNA 3â² end processing;
Poly(A) polymerase (PAP) diversity in gene expression - Star-PAP vs canonical PAP
Keywords: Poly(A) polymerase (PAP); Canonical PAP; PAP isoforms; PAPα; Star-PAP; PI4,5P2; PIPKIα; CKI; Polyadenylation; Uridylation; 3â²-end processing; Oxidative stress;
A new look at adenovirus splicing
Keywords: Adenovirus type 2 infection; RNA splicing; Polyadenylation; cDNA sequencing;
Accurate identification of non-polyadenylated RNA using a custom human cytomegalovirus tiling array
Keywords: HCMV; human cytomegalovirus; lncRNA; long non-coding RNA; Poly(A)+; 3â² polyadenylation; Human cytomegalovirus; Polyadenylation; Tiling array; lncRNA5;
First functional analysis of a novel splicing mutation in the B3GALTL gene by an ex vivo approach in Tunisian patients with typical Peters plus syndrome
Keywords: B3GALTL; beta-1,3-glucosyltransferase; cDNA; DNA complementary to RNA; PTC; premature translation stop codon; mRNA; messenger ribonucleic acid; NMD; nonsense-mediated mRNA decay; PPS; Peters plus syndrome; DNA; deoxyribonucleic acid; B3GTL; beta3-glycosyl
Molecular cloning and characterization of a novel isoform of the non-canonical poly(A) polymerase PAPD7
Keywords: ncPAP; noncanonical poly(A) polymerase; NES; nuclear export signal; NLS; nuclear localization signal; NTD; nucleotidyl transferase domain; CUT; cryptic unstable transcripts; siRNA; small interfering RNA; LMB; leptomycin B; Polyadenylation; PAPD5; PAPD7; N
Functional premature polyadenylation signals and aberrant splicing within a recombinant protein coding sequence limit expression
Keywords: Expression; Optimization; RNA; Polyadenylation; Aberrant; Splicing;
A high-fat diet increases l-carnitine synthesis through a differential maturation of the Bbox1 mRNAs
Keywords: l-carnitine; Fatty acid metabolism; Polyadenylation; mRNA stability;
ELAV proteins along evolution: Back to the nucleus?
Keywords: RBP; RNA-binding protein; elav; embryonic lethal abnormal vision; miRNA; microRNA; rbp9; RNA-binding protein 9; fne; found in neurons; ARE; AU-rich element; UTR; untranslated region; RRM; RNA recognition motif; PABP; polyA-binding protein; eiF4A; eukaryot
The long and the short of it: The role of the zinc finger polyadenosine RNA binding protein, Nab2, in control of poly(A) tail length
Keywords: Nab2; ZC3H14; Poly(A) binding protein; Poly(A) tail length control; Polyadenylation; Zinc finger;
Internal polyadenylation of parvoviral precursor mRNA limits progeny virus production
Keywords: Parvovirus; Polyadenylation; Virus production
Inefficient splicing of segment 7 and 8 mRNAs is an inherent property of influenza virus A/Brevig Mission/1918/1 (H1N1) that causes elevated expression of NS1 protein
Keywords: Influenza; Spanish flu; NS1; Splicing; Polyadenylation; SR proteins; ASF/SF2; SRp30c; SRp40;
Plasmodium falciparum spliceosomal RNAs: 3â² and 5â² end processing
Keywords: Plasmodium; Small nuclear RNA; Small nuclear ribonucleoprotein; Spliceosome; RNA splicing; Polyadenylation;
Increased RNA editing in EAAT2 pre-mRNA from amyotrophic lateral sclerosis patients: Involvement of a cryptic polyadenylation site
Keywords: Motor neurone disease; RNA editing; Polyadenylation; Stem-loop; Inosine; Glutamate transporter;
Mitochondrial RNA processing in trypanosomes
Keywords: Trypanosoma; Mitochondria; RNA editing; Polyadenylation; Translation
FTIR spectral signatures of mouse antral oocytes: Molecular markers of oocyte maturation and developmental competence
Keywords: A; Adenine; CPE; cytoplasmic polyadenylation element; CpG; Cytosine-phosphate-Guanine; FTIR; Fourier Transform InfraRed; GV; Germinal vesicle; GVBD; Germinal vesicle break down; MCT; Mercury cadmium telluride; MI; Metaphase I; MII; Metaphase II; mRNA; mes
PolyA-iEP: A data mining method for the effective prediction of polyadenylation sites
Keywords: Data mining; Machine learning; Classification; Emerging pattern; Bioinformatics; Polyadenylation
The Arabidopsis ortholog of the 77 kDa subunit of the cleavage stimulatory factor (AtCstF-77) involved in mRNA polyadenylation is an RNA-binding protein
Keywords: Polyadenylation; CstF77; CPSF30; RNA-bindingCstF, cleavage stimulatory factor; CPSF, cleavage and polyadenylation specificity factor; RRM, RNA recognition motif; MBP, maltose binding protein
Association of a Polyadenylation Polymorphism in the Serotonin Transporter and Panic Disorder
Keywords: Gender; genetic; panic disorder; polyadenylation; polymorphism; serotonin transporter;
Chain termination and inhibition of mammalian poly(A) polymerase by modified ATP analogues
Keywords: Polyadenylation; Nucleoside analogues; RNA post-transcriptional processing; Molecular modeling; Hematological malignancies
A classification-based prediction model of messenger RNA polyadenylation sites
Keywords: Arabidopsis; Classification-based modeling; Genome annotation; Polyadenylation; Predictive modeling;