Keywords: Physiochemical properties; PPIs; PSSM; PNN;
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Vanadium complexes supported on organic polymers as sustainable systems for catalytic oxidations
Keywords: PS; polystyrene cross-linked with divinyl benzene; PS-CH2-Cl; chloromethylated PS; PS-im; imidazolomethylpolystyrene; PEG; polyethyleneglycol; acac; acetylacetonato; PMAn; cross linked polyacrylate polymers; c-PMAn-V; polymer anchored vanadium compounds o
Keywords: Archaea; Thermococcales; Genome evolution; Mobile elements; Bioinformatics; Chromosomal landmarks; dif; chromosome dimer resolution site; NCBI; National Center for Biotechnology Information; nt; nucleotide; ORB; origin recognition boxes; oriC; origin of r
Keywords: HIV; Human Immunodeficiency Virus; rDNA; recombinant DNA technology; MHC; major histocompatibility complex; HLA; human leukocyte antigen; PSSM; Position Specific Scoring Matrices; ANN; Artificial Neuronal Networks; QM; quantitative matrices; KISS; Kernel-
Keywords: GFP; green fluorescent protein; ROC; receiver operator characteristic; H-bond; hydrogen bond; PSSM; position specific scoring matrix; Amyloid fibril; Bioinformatics; Neurodegenerative disease; Protein misfolding;
Using Chou's general PseAAC to analyze the evolutionary relationship of receptor associated proteins (RAP) with various folding patterns of protein domains
Keywords: Rap protein fold; Support vector machine; PSSM; Molecular evolution;
Predicting apoptosis protein subcellular localization by integrating auto-cross correlation and PSSM into Chou's PseAAC
Keywords: Protein subcellular localization; Autocorrelation function; Cross correlation; Support vector machine; PSSM;
Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC
Keywords: PseAAC; PSSM; PCA; Oversampling; SVM; Jackknife tests;
Research ArticleEnhanced identification of β-lactamases and its classes using sequence, physicochemical and evolutionary information with sequence feature characterization of the classes
Keywords: β-Lactamases; Physicochemical properties; Dipeptide counts; PSSM; Average one dependence estimator;
Pan-genome analysis of Clostridium botulinum reveals unique targets for drug development
Keywords: C. botulinum; Clostridium botulinum; COG; Clusters of Orthologous Groups of Proteins; WHO; World Health Organization; HSP; high scoring proteins; SWG; Smith-Waterman-Gotoh; BPGA; Bacterial pan Genome Analysis; MLST; multi locus sequence typing; PSI-BL
Bi-PSSM: Position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins
Keywords: SVM; PSSM; Mycobacterium protein;
Identification of DNA binding proteins using evolutionary profiles position specific scoring matrix
Keywords: PSSM; SAAC; DPC; SVM; KNN; DNA-binding
Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach
Keywords: Hemoglobin; Vertebrate hemoglobin; Support vector machines; Confusion matrix; ROC analysis; Position specific scoring matrix; Hybrid approaches; PSSM; SVM; Fish hemoglobin; Amphibians hemoglobin; Reptiles hemoglobin; Aves hemoglobin; Mammalian hemoglobin;
GoFDR: A sequence alignment based method for predicting protein functions
Keywords: GO; Gene Ontology; AA; amino acid; IEA; inferred from electronic evidence; RCA; inferred from reviewed computational analysis; BP; biological process; CC; cellular component; MF; molecular function; PSSM; position-specific score matrix; FDRs; functionally
MATEPRED-A-SVM-Based Prediction Method for Multidrug And Toxin Extrusion (MATE) Proteins
Keywords: Antibiotics; Drug resistance; MATE; PSSM; SVM; Diarrheal pathogens
Effect of Diet on Haflinger Horses With GYS1 Mutation (Polysaccharide Storage Myopathy Type 1)
Keywords: PSSM; Haflinger; Horse; Fiber type; GYS 1
Performance of a clonal-based HIV-1 tropism phenotypic assay
Keywords: MVC; maraviroc; R5 viruses; viruses that use CCR5 co-receptor; HIV-1; human immunodeficiency virus 1; X4 viruses; viruses that use co-receptor CXCR4; X4R5/Dual-tropic; viruses that use both co-receptors CCR5 and CXCR4 co-receptors; D/M; mixed virus popula
The application of modular protein domains in proteomics
Keywords: pTyr; phosphotyrosine; PTM; post-translational modification; MS; mass spectrometry; PSSM; position specific scoring matrix; SH2; Src homology 2; SH3; Src homology 3; WW; tryptophan tryptophan; PDZ; post synaptic density protein 95-disks large protein 4-zo
Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM
Keywords: Nuclear protein; Subnuclear localization; Multiclass SVM; Factor solution score; PSSM
Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in human DNA repair genes
Keywords: SNP; non-synonymous; dbSNP; phenotypic effects; BER; base excision repair; BLAST; Basic Local Alignment Search Tool; cSNP; coding single nucleotide polymorphism (SNP in protein-coding region); dbSNP; public database of human single nucleotide polymorphism