Specific interferon tau gene-regulation networks in bovine endometrial luminal epithelial cells
Keywords: Interferon tau; RNA-seq; Bovine; Gene-regulation network;
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Effects of essential oil decanal on growth and transcriptome of the postharvest fungal pathogen Penicillium expansum
Keywords: Penicillium expansum; Decanal; Patulin; RNA-seq;
Aluminum-responsive genes revealed by RNA-Seq and related physiological responses in leaves of two Citrus species with contrasting aluminum-tolerance
Keywords: Aluminum-toxicity; Citrus grandis; Citrus sinensis; Hormone; Leaves; RNA-Seq;
Changes in fenugreek transcriptome induced by methyl jasmonate and steroid precursors revealed by RNA-Seq
Keywords: CHL; cholesterol; FPKM; fragments per kilobase of transcript per million mapped reads; KCHL; pool of transcriptome after cholesterol treatment; KK; pool of control transcriptome; KMeJ; pool of transcriptome after methyl jasmonate treatment; KSQ; pool of t
Analysis of the meiotic transcriptome reveals the genes related to the regulation of pollen abortion in cytoplasmic male-sterile pepper (Capsicum annuum L.)
Keywords: CMS; cytoplasmic male sterility; PMCs; pollen mother cells; PCD; programmed cell death; RNA-seq; RNA sequencing; DEGs; differentially expressed genes; SCAR; sequence-characterized amplified region; TUNEL; terminal deoxynucleotidyl transferase dUTP nick en
The transcriptome analyses of Tagetes erecta provides novel insights into secondary metabolite biosynthesis during flower development
Keywords: Cq; Quantification Cycle; DEG; Differentially Expressed Gene; FDR; False Discovery Rate; FPKM; Fragments Per Kilobase of exon model per Million mapped reads; GO; Gene Ontology; NCBI; National Center for Biotechnology Information; qRT-PCR; Quantitative Rev
Toxicogenomics of the flame retardant tris (2-butoxyethyl) phosphate in HepG2 cells using RNA-seq
Keywords: Tris (2-butoxyethyl) phosphate; HepG2; RNA-seq; Toxicogenomics; Mode of action;
Expression of genes in the potential regulatory pathways controlling alternate bearing in 'Fuji' (Malus domestica Borkh.) apple trees during flower induction
Keywords: RNA-seq; Alternate bearing; Floral induction; Gibberellin; Malus domestica;
Transcriptome analysis reveals complex response of the medicinal/ornamental halophyte Iris halophila Pall. to high environmental salinity
Keywords: Iris halophila pall.; Salt toxicity; Halophyte; RNA-seq; Signal transduction; Flavonoid;
RNA-Seq-derived identification of differential transcription in the eggplant (Solanum melongena) following inoculation with bacterial wilt
Keywords: ATP; adenosine triphosphate; Aux; auxin; bp; base pair(s); cDNA; DNA complementary to RNA; CDS; coding sequences; CNGCs; cyclic nucleotide gated channels; COG; clusters of orthologous genes; dpi; days post-inoculation; EPS; extracellular polysaccharides;
RNA sequencing reveals target genes of temporomandibular joint osteoarthritis in rats after the treatment of low-intensity pulsed ultrasound
Keywords: LIPUS; low-intensity pulsed ultrasound; TMJ-OA; temporomandibular joint osteoarthritis; UOT; unilateral occlusal trauma; RNA-Seq; RNA sequencing; GO; gene oncology; KEGG; kyoto encyclopedia of genes and genomes; DEGs; differentially expressed genes; qRT-P
RNA-Seq-based transcriptomic analysis of Saccharomyces cerevisiae during solid-state fermentation of crushed sweet sorghum stalks
Keywords: RNA-Seq; Transcriptomic analysis; Saccharomyces cerevisiae; Solid-state fermentation; Sweet sorghum;
Controlling the false-discovery rate by procedures adapted to the length bias of RNA-Seq
Keywords: primary; 62P10; secondary; 92B05; Common weight; Individual weight; Length bias; RNA-Seq; Separate procedure; Weighted procedure;
Lrp6 is a target of the PTH-activated αNAC transcriptional coregulator
Keywords: αNAC; α chain of nascent polypeptide associated complex; PTH; Parathyroid Hormone; PKA; protein kinase A; ChIP; chromatin immunoprecipitation; ChIP-Seq; ChIP-sequencing; LRP6; Low density lipoprotein receptor-Related Protein 6; iPTH; intermittent PTH; P
De novo assembly and comparative transcriptome analysis reveals genes potentially involved in tissue-color changes in centipedegrass (Eremochloa ophiuroides [Munro] Hack.)
Keywords: Centipedegrass; Eremochloa ophiuroides; Transcriptome; Color change; RNA-Seq; RT-qPCR;
Clustering of RNA-Seq samples: Comparison study on cancer data
Keywords: RNA-Seq; Gene expression; Clustering; Cluster analysis; Cancer;
In Inflamed Intestinal Tissues and Epithelial Cells, Interleukin 22Â Signaling Increases Expression of H19 Long Noncoding RNA, Which Promotes Mucosal Regeneration
Keywords: Gene Regulation; Mouse Model; Ulcerative Colitis; Tissue Repair; cAMP; adenosine 3â²,5â²-cyclic monophosphate; DSS; dextran sulfate sodium; GI; growth inhibitory; IL; interleukin; lncRNA; long noncoding RNA; LPS; lipopolysaccharide; MIR675; microRNA 675
Traditional Mongolian medicine Eerdun Wurile improves stroke recovery through regulation of gene expression in rat brain
Keywords: tPA; tissue plasminogen; MCAO/R; middle cerebral artery occlusion/reperfusion; EW; Eerdun Wurile; NGF; nerve growth factor; BDNF; brain-derived neurotrophic factor; DEGs; differentially expressed genes; Igf2; insulin-like growth factor 2; IGFBP2; insulin-
Adiponectin AS lncRNA inhibits adipogenesis by transferring from nucleus to cytoplasm and attenuating Adiponectin mRNA translation
Keywords: AdipoQ; Adiponectin; AS lncRNA; antisense long noncoding RNA; FISH; fluorescence in situ hybridization; RPA; ribonuclease protection assay; iWAT; inguinal white adipose tissue; eWAT; epididymal white adipose tissue; BAT; brown adipose tissue; TG; triglyce
Identification and characterization of long non-coding RNAs involved in the formation and development of poplar adventitious roots
Keywords: Long non-coding RNA; Adventitious root; Populus; RNA-seq; lncWOX5; lncWOX11;
Hippocampus and Hypothalamus RNA-sequencing of WFS1-deficient Mice
Keywords: AVP; arginine vasopressin; Avpr1a; arginine vasopressin receptor subtype V1a gene in mouse; Avpr1b; vasopressin receptor subtype V1b gene in mouse; ER; endoplasmic reticulum; FDR; False Discovery Rate; LogFC; Log2 Fold Change; PVH; paraventricular nucleus
Differentiation of sow and mouse ovarian granulosa cells exposed to zearalenone in vitro using RNA-seq gene expression
Keywords: ZEA; Porcine; Mouse; Granulosa cells; Gene expression; RNA-seq;
Involvement of metabolic, physiological and hormonal responses in the graft-compatible process of cucumber/pumpkin combinations was revealed through the integrative analysis of mRNA and miRNA expression
Keywords: Cucumber (Cucumis sativus L.); RNA-Seq; sRNA-seq; Graft compatibility;
Comparative transcriptomic analysis of Cerrena unicolor revealed differential expression of genes engaged in degradation of various kinds of wood
Keywords: AO; alcohol oxidase; CDH; cellobiose dehydrogenase; DyP; dye-decolorizing peroxidase; FCL; fungal culture collection in lublin; LDA; lignin-degrading auxiliary enzymes; LiP; lignin peroxidase; LME; lignin-modifying enzymes; MnP; manganese peroxidase; POD;
Region-specific expression of circular RNAs in the mouse brain
Keywords: Circular RNAs; Transcriptome; RNA-seq; Hippocampus; Prefrontal cortex;
Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the northern Gulf of Mexico and southeastern U.S. Atlantic coasts
Keywords: Tursiops truncatus; Bottlenose dolphin; Skin transcriptomics; RNA-seq;
Dynamic miRNA-mRNA regulations are essential for maintaining Drosophila immune homeostasis during Micrococcus luteus infection
Keywords: RNA-Seq; Small RNA-Seq; miRNA-mRNA regulation; Innate immune; Homeostasis; Drosophila melanogaster;
microRNA 125a Regulates MHC-I Expression on Esophageal Adenocarcinoma Cells, Associated With Suppression of Antitumor Immune Response and Poor Outcomes of Patients
Keywords: miR-125; miR-148; Antitumor Immune Response; Immune Checkpoints; CTL; cytotoxic T lymphocytes; CTLA-4; cytotoxic T lymphocyte associated protein 4; EAC; esophageal adenocarcinoma; gMFI; geometric mean fluorescence intensity; HLA-A/B/C; human leukocyte ant
The R2R3 transcription factor HlMYB8 and its role in flavonoid biosynthesis in hop (Humulus lupulus L.)
Keywords: 8PN; 8-prenylnaringenin; ANR; anthocyanin reductase; BA; bitter acids; CHI; chalcone isomerase; CHS; chalcone synthase; DEG; differentially expressed genes; DFR; dihydroflavonol reductase; F3â²H; flavonoid 3-hydroxylase; F3H; flavanone 3-hydroxylase; FLS
Sex determination and differentiation genes in a functional hermaphrodite scallop, Nodipecten subnodosus
Keywords: Lion-paw-scallop; Testis-ovary-genes; RNA-Seq; Tissue-expression;
Loss of Trem2 in microglia leads to widespread disruption of cell coexpression networks in mouse brain
Keywords: TREM2; Alzheimer's disease; Weighted gene coexpression network analysis; RNA-Seq; Knockout mouse model; Endothelial cells;
A whole-body transcriptome analysis and expression profiling of odorant binding protein genes in Oedaleus infernalis
Keywords: Oedaleus infernalis; Transcriptome; Odorant-binding proteins; Expression profile; RNA-Seq;
Expression of long non-coding RNA LINC00973 is consistently increased upon treatment of colon cancer cells with different chemotherapeutic drugs
Keywords: lncRNA; Colorectal cancer; RNA-Seq; Chemotherapeutic drugs; Cancer biomarkers;
Modular organization analysis of specific naringin/neoeriocitrin related gene expression induced by UVC irradiation in Drynaria roosii
Keywords: bHLH; basic helix-loop-helix; C3H; p-coumarate 3-hydroxylase; C3'H; p-coumarate 3â²-hydroxylase; C4H; cinnamate 4-hydroxylase; CHI; chalcone isomerase; CHS; chalcone synthase; 4CL; 4-coumarate CoA ligase; CNR; new rhizome; CNRCK; new rhizome treated fo
De novo assembly and analysis of midgut transcriptome of the argasid tick Ornithodoros erraticus and identification of genes differentially expressed after blood feeding
Keywords: Argasid; Ornithodoros erraticus; Transcriptome; RNA-seq; Midgut; Blood digestion;
Genome-wide Profiling of Urinary Extracellular Vesicle microRNAs Associated With Diabetic Nephropathy in Type 1 Diabetes
Keywords: diabetic nephropathy; extracellular vesicles; microalbuminuria; microRNAs; RNA-seq;
NGS-identified circulating miR-375 as a potential regulating component of myocardial infarction associated network
Keywords: Myocardial infarction; RNA-seq; Circulating miRNAs; miR-208b; miR-375; Disease module;
RNA-seq analysis reveals differences in transcript abundance between cultured and sand fly-derived Leishmania infantum promastigotes
Keywords: Leishmania infantum; Promastigotes; Phlebotomus perniciosus; Axenic culture; RNA-seq; Metacyclogenesis;
Transcriptional analysis reveals the critical role of RNA polymerase-binding transcription factor, DksA, in regulating multi-drug resistance of Escherichia coli
Keywords: Escherichia coli; Transcriptional regulator DksA; RNA-seq; Multi-drug resistance;
Transcriptomic study of the toxic mechanism triggered by beauvericin in Jurkat cells
Keywords: Beauvericin; Jurkat; Immunotoxicology; RNA-seq; Toxicogenomics; Transcriptomics;
Genome-wide analysis of differentially expressed genes and the modulation of PEDV infection in Vero E6 cells
Keywords: PEDV; RNA-Seq; mTOR signaling pathway; Antiviral;
Pluripotent stem cell models of Blau syndrome reveal an IFN-γ-dependent inflammatory response in macrophages
Keywords: Blau syndrome; nucleotide-binding oligomerization domain 2; nuclear factor κB; IFN-γ; disease-specific induced pluripotent stem cells; ChIP; Chromatin immunoprecipitation; DAPI; 4â²-6-Diamidino-2-phenylindole dihydrochloride; gRNA; Guide RNA; GSEA; Gen
Brochosomins and other novel proteins from brochosomes of leafhoppers (Insecta, Hemiptera, Cicadellidae)
Keywords: Insect; Secretory granules; Proteomics; Transcriptomes; Novel protein families; Malpighian tubules; Expression analysis; RNA-Seq; Taxonomically restricted genes; Orphan genes;
Detection and profiling of circular RNAs in uninfected and maize Iranian mosaic virus-infected maize
Keywords: Circular RNAs; Plant gene regulation; Maize; MIMV; RNA-Seq;
CircRNA accumulation: A new hallmark of aging?
Keywords: circRNA; circular RNA; FACS; fluorescence-activated cell sorting; FDR; false discovery rate; NGS; next-generation sequencing; RPAD; RNase R treatment followed by polyadenylation and poly(A)+ RNA depletion; RBP; RNA-binding protein; RCM; Reverse complement
Next generation sequencing analysis of soy glyceollins and 17-β estradiol: Effects on transcript abundance in the female mouse brain
Keywords: Phytoestrogen; Selective estrogen receptor modulator; RNA-Seq; Neuroendocrinology; Glyceollin; Soy;
Transcriptomic analysis of Momordica charantia polysaccharide on streptozotocin-induced diabetic rats
Keywords: M. charantia; Momordica charantia; RNA-seq; RNA sequencing; T2DM; Type 2 diabetes mellitus; IR; insulin resistance; PPAR; peroxisome proliferator-activated receptor; FBG; fasting blood glucose; G6Pase; glucose-6-phosphatase; PEPCK; phosphoenol pyruvate ca
Physiological and pathophysiological implications of PGE2 and the PGE2 synthases in the kidney
Keywords: AA; arachidonic acid; CCD; cortex collecting duct; CD; collecting duct; COX; cyclooxygenase; DCT; distal convoluted tubule; DTL; descending thin limb; EP; E-prostanoid receptor (PGE2 receptor); IMCD; inner medullary collecting duct; KO; knockout; MCD; med
Single sample sequencing (S3EQ) of epigenome and transcriptome in nucleus accumbens
Keywords: High-throughput sequencing; ChIP-seq; RNA-seq; S3EQ;
Transcriptome analysis of 'Huanghai No. 2' Fenneropenaeus chinensis response to WSSV using RNA-seq
Keywords: 'Huanghai No.2' F. chinensis; RNA-Seq; Transcriptome; WSSV; Hepatopancreas; Immune response;