High resolution single particle refinement in EMAN2.1
Keywords: زیست شناسی ساختاری; CryoEM; Single particle analysis; Image processing; 3-D reconstruction; Structural biology;
مقالات ISI زیست شناسی ساختاری (ترجمه نشده)
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Methods to study the coupling between replicative helicase and leading-strand DNA polymerase at the replication fork
Keywords: زیست شناسی ساختاری; Replicative helicase; DNA polymerase; Pre-steady state kinetics; Base pair unwinding-synthesis rate constant; Chemical step size; Structural biology; Bacteriophage T7 replication; Mitochondrial DNA replication;
Structural biology applications of solid state MAS DNP NMR
Keywords: زیست شناسی ساختاری; Dynamic Nuclear Polarization (DNP); Solid state MAS NMR; Structural biology; Hyperpolarization;
The ins and outs of lncRNA structure: How, why and what comes next?
Keywords: زیست شناسی ساختاری; LncRNA; Structure; RNA structure; RNA-protein interaction; Structural biology; non-coding;
Dual stoichiometry and subunit organization in the ClpP1/P2 protease from the cyanobacterium Synechococcus elongatus
Keywords: زیست شناسی ساختاری; Clp protease; Enzyme structure; Macromolecular protein complexes; Structural biology; Mass spectrometry (MS); Stoichiometry;
The Ys and wherefores of protein kinase autoinhibition
Keywords: زیست شناسی ساختاری; Phosphorylation; Structural biology; Signaling; Regulation
Protein-protein interactions within the ensemble, eukaryotic V-ATPase, and its concerted interactions with cellular machineries
Keywords: زیست شناسی ساختاری; Bioenergetics; V-ATPase; Vacuolar ATPase; Saccharomyces cerevisiae; Molecular engine; Coupling; Structural biology;
Crystallographic and solution studies of NAD+- and NADH-bound alkylhydroperoxide reductase subunit F (AhpF) from Escherichia coli provide insight into sequential enzymatic steps
Keywords: زیست شناسی ساختاری; Bioenergetics; Reactive oxygen species; Oxidative stress; Alkylhydroperoxide reductase; Redox homeostasis; Structural biology;
Molecular recognition of avirulence protein (avrxa5) by eukaryotic transcription factor xa5 of rice (Oryza sativa L.): Insights from molecular dynamics simulations
Keywords: زیست شناسی ساختاری; Gene-for-gene; Molecular dynamics; Hypersensitive response (HR); MM/PBSA; Structural biology; Binding free energy;
Computing 1-D atomic densities in macromolecular simulations: The density profile tool for VMD
Keywords: زیست شناسی ساختاری; Electron density; Projection; Molecular dynamics; Lipid; Membrane; Trajectory; Structural biology; Graphical user interface
The “tale” of poly(A) binding protein: The MLLE domain and PAM2-containing proteins
Keywords: زیست شناسی ساختاری; RNA binding protein; mRNA decay; mRNA translation; Polyadenylation; Translational control; Structural biology;
X-ray crystallography and NMR as tools for the study of protein tyrosine phosphatases
Keywords: زیست شناسی ساختاری; Structural biology; X-ray crystallography; NMR spectroscopy; Protein phosphatase; Biophysics; Catalysis;
Relevance of rhodopsin studies for GPCR activation
Keywords: زیست شناسی ساختاری; Rhodopsin; G protein-coupled receptors; GPCR activation; Structural biology; Structural bioinformatics;
Structural characterization of a β-hydroxyacid dehydrogenase from Geobacter sulfurreducens and Geobacter metallireducens with succinic semialdehyde reductase activity
Keywords: زیست شناسی ساختاری; Succinic semialdehyde reductase; Structural biology; GABA shunt; Bio-inspired catalysis; Protein X-ray crystallography; β-HAD; β-hydroxyacid dehydrogenase; Gs-βHAD; Geobacter sulfurreducens β-HAD; Gm-βHAD; Geobacter metallireducens β-HAD; SSA; succi
Crystal structure of the transport unit of the autotransporter adhesin involved in diffuse adherence from Escherichia coli
Keywords: زیست شناسی ساختاری; AIDA-I; Autotransporter; Escherichia coli; Membrane proteins; Outer membrane (OM); Protein secretion; Protein structure; Structural biology; Type V secretion; X-ray crystallography;
High-resolution NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids
Keywords: زیست شناسی ساختاری; Reverse micelle NMR; Protein encapsulation; Nucleic acid encapsulation; Low viscosity fluid; Structural biology; Biophysics;
Key roles of the Escherichia coli AhpC C-terminus in assembly and catalysis of alkylhydroperoxide reductase, an enzyme essential for the alleviation of oxidative stress
Keywords: زیست شناسی ساختاری; Reactive oxygen species; Oxidative stress; Alkylhydroperoxide reductase; Redox homeostasis; Structural biology; Electron microscopy;
NMR contributions to structural dynamics studies of intrinsically disordered proteins
Keywords: زیست شناسی ساختاری; Intrinsically disordered proteins; Protein meta-structure; Structural biology; Biomolecular NMR; EPR spectroscopy; NMR spin relaxation;
Molecular basis of transcriptional fidelity and DNA lesion-induced transcriptional mutagenesis
Keywords: زیست شناسی ساختاری; RNA polymerase II; Transcription elongation; Fidelity control; DNA damage recognition; Transcriptional lesion bypass; Synthetic nucleotide analogs; Unlocked nucleic acid; Nonpolar isostere; Chemical biology; Structural biology; Computational biology;
Assembly and structure of the T3SS
Keywords: زیست شناسی ساختاری; Type 3 secretion; Structural biology; Bacterial secretion; Bacterial pathogenesis;
Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers
Keywords: زیست شناسی ساختاری; AU; TopSpin macro programming language; BMRB; Biological Magnetic Resonance Data Bank; HIFI-NMR; High-resolution Iterative Frequency Identification for NMR; PINE; Probabilistic Interaction Network of Evidence; TD; parameter in TopSpin representing the num
Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers
Keywords: زیست شناسی ساختاری; Quantitation; Cross-linking; Structural biology; Protein dynamics; Mass spectrometry; Proteomics;
Structure and properties of the metastable bacteriocin Lcn972 from Lactococcus lactis
Keywords: زیست شناسی ساختاری; JKEIHGGTTICLBP-KHQKELGESA-NAntibiotics; NMR spectroscopy; Structural biology
Protein motifs retrieval by SS terns occurrences
Keywords: زیست شناسی ساختاری; Protein motif retrieval; Secondary Structures; Similarity search; Generalized Hough Transform; Pattern recognition; Structural biology
Aquaporin 4 molecular mimicry and implications for neuromyelitis optica
Keywords: زیست شناسی ساختاری; Molecular mimicry; Epitope; Mimotope; Bioinformatics; Structural biology; Plant proteins
A structural perspective on RNA polymerase I and RNA polymerase III transcription machineries
Keywords: زیست شناسی ساختاری; Eukaryotic transcription; RNA polymerase I; RNA polymerase III; rRNAs; tRNAs; Structural biology
Design and synthesis of a series of α-benzyl phenylpropanoic acid-type peroxisome proliferator-activated receptor (PPAR) gamma partial agonists with improved aqueous solubility
Keywords: زیست شناسی ساختاری; NR, nuclear receptor; hPPAR, human peroxisome proliferator-activated receptor; LBD, ligand-binding domain; PDB, protein data bank3VSO; hPPARγ LBD-(R)-7JHuman peroxisome proliferator-activated receptor; PPAR gamma; Partial agonist; Structural biology
Crystal structure of cutinase Est119 from Thermobifida alba AHK119 that can degrade modified polyethylene terephthalate at 1.76Â Ã
resolution
Keywords: زیست شناسی ساختاری; Est119; Cutinase; Polyester-degrading enzyme; Thermobifida alba; Structural biology; Crystal structure; PET; polyethylene terephthalate; Est119; cutinase from Thermobifida alba strain AHK119; PEG; polyethylene glycol;
X-ray crystallographic structure-based design of selective thienopyrazole inhibitors for interleukin-2-inducible tyrosine kinase
Keywords: زیست شناسی ساختاری; GBDUVEXHPMNVRW-UHFFFAOYSA-N; UJXIKUVGGQECLJ-UHFFFAOYSA-N; FVSUKLKFSDSIEF-UHFFFAOYSA-N; OHAIFZDRLDEOAC-UHFFFAOYSA-N; PVCKRSKEOOWVMP-UHFFFAOYSA-N; LXMWGYNOGUKODT-UHFFFAOYSA-N; CQZZZUNOWZUNNG-UHFFFAOYSA-N; YBKODNZGBUDZRA-UHFFFAOYSA-N; Itk; interleukin-2-indu
SCP/TAPS proteins in helminths – Where to from now?
Keywords: زیست شناسی ساختاری; Ancylostoma-secreted proteins; Classification; Bioinformatics; Vaccine candidates; Phylogeny; Structural biology
Engineering human MEK-1 for structural studies: A case study of combinatorial domain hunting
Keywords: زیست شناسی ساختاری; Gene fragmentation; Protein expression; Structural biology; MEK-1; Domain hunting;
Energies and physicochemical properties of cation–π interactions in biological structures
Keywords: زیست شناسی ساختاری; Cation–π interaction; Quantum chemistry; Molecular modeling; Protein structures; Structural biology
Tree representation of digital picture embeddings
Keywords: زیست شناسی ساختاری; Tree representation; Digital picture; Embedding; Component tree image representation; Digital picture embeddings; Tree embeddings; Structural biology; Digital space; Connectedly embedded
Structure, stability and dynamics of norovirus P domain derived protein complexes studied by native mass spectrometry
Keywords: زیست شناسی ساختاری; P-particle; Norovirus; Mass spectrometry; Ion mobility mass spectrometry; Structural biology; Macromolecular protein complexes;
Correlative microscopy: Providing new understanding in the biomedical and plant sciences
Keywords: زیست شناسی ساختاری; Cell wall; Combined microscopy; Correlative microscopy; Combinatorial labelling; Fine structure immunochemistry; Fluorescent probes; Gold labelling; Integrated microscopy; Microspore; Multi-dimensional microscopy; Nanoscopy; Cell morphometrics; Phloem; Pl
Structural modelling and dynamics of proteins for insights into drug interactions
Keywords: زیست شناسی ساختاری; Molecular dynamics; Protein structure; Computational biology; Structural biology; Drug targets; Drug–target interactions
BINANA: A novel algorithm for ligand-binding characterization
Keywords: زیست شناسی ساختاری; BINANA; Computer algorithm; Ligand-binding analysis; Computer-aided drug design; Structural biology; Virtual screening
The N-terminal β-barrel domain of mammalian lipoxygenases including mouse 5-lipoxygenase is not essential for catalytic activity and membrane binding but exhibits regulatory functions
Keywords: زیست شناسی ساختاری; Eicosanoids; Lipid peroxidation; Molecular enzymology; Structural biology; Site directed mutagenesis; Reaction specificity
Computational approaches to selecting and optimising targets for structural biology
Keywords: زیست شناسی ساختاری; MSA; Multiple Sequence Alignment; PTM; Post Translational Modification; SSPF; Scottish Structural Proteomics Facility; MCC; Matthew's correlation coefficient; AROC; Area Under the Receiver Operator Characteristic curve; Target selection; Crystallisation
Tight association of N-terminal and catalytic subunits of rabbit 12/15-lipoxygenase is important for protein stability and catalytic activity
Keywords: زیست شناسی ساختاری; LOX(s); lipoxygenase(s); sLOX1; soybean lipoxygenase-1; LA; linoleic acid; 15-HETE; (15S,5Z,8Z,11Z,13E)-15-hydroxyeicosa-5,8,11,13-tetraenoic acid; 12-HETE; (12S,5Z,8Z,10E,14Z)-12-hydroxyeicosa-5,8,10,14-tetraenoic acid; HEPES; 4-(2-Hydroxyethyl)-1-pipera
NMR and small-angle scattering-based structural analysis of protein complexes in solution
Keywords: زیست شناسی ساختاری; NMR; SAXS; SANS; SAS; Structural biology; Protein complexes; Multi-domain proteins; NMR; nuclear magnetic resonance; SAS; small-angle scattering; SAXS; small-angle X-ray scattering; WAXS; wide angle X-ray scattering; SANS; small angle neutron scattering;
New and unconventional approaches for advancing resolution in biological transmission electron microscopy by improving macromolecular specimen preparation and preservation
Keywords: زیست شناسی ساختاری; Biospecimen preparation; Cryo-TEM; High-resolution TEM; Macromolecules; Radiation damage; Structural biology
Structural biology of retroviral DNA integration
Keywords: زیست شناسی ساختاری; HIV-1; Prototype foamy virus; Integrase; Integration; AIDS; Integrase strand transfer inhibitor; Raltegravir; Structural biology; X-ray crystallography;
Spectroscopy and a High-Resolution Crystal Structure of Tyr263 Mutants of Cyanobacterial Phytochrome Cph1
Keywords: زیست شناسی ساختاری; PCB, phycocyanobilin; SEC, size-exclusion chromatography; PDB, Protein Data Bank; MAS, magic angle spinning; Mes, 4-morpholineethanesulfonic acidphotobiology; structural biology; photoreceptors; intramolecular signaling; spectroscopy
In-cell NMR spectroscopy
Keywords: زیست شناسی ساختاری; In-cell NMR; Structural biology; Proteomics; Protein-protein interactions; Small molecule library screening;
CommunicationStructural study of the membrane protein MscL using cell-free expression and solid-state NMR
Keywords: زیست شناسی ساختاری; Solid-state NMR spectroscopy; Magic-angle spinning; Membrane proteins; Isotope labeling; Structural biology;
Computational protein design: Advances in the design and redesign of biomolecular nanostructures
Keywords: زیست شناسی ساختاری; Computational protein design; Nanostructures; Structural biology; Self-assembly; Protein library; Protein symmetry; Nanoparticle; Optoelectronic; Cofactor; Porphyrin; Membrane protein
Stoichiometric protein complex formation and over-expression using the prokaryotic native operon structure
Keywords: زیست شناسی ساختاری; Operon; Protein–protein interaction; Protein complex; Structural biology; Crystallization of protein complexes; Mycobacterium tuberculosis
Understanding specificity in metabolic pathways—Structural biology of human nucleotide metabolism
Keywords: زیست شناسی ساختاری; Structural biology; Metabolic pathway; Nucleotide metabolism; Specificity determinants; Substrate specificity; Negative selectivity
New baculovirus expression tools for recombinant protein complex production
Keywords: زیست شناسی ساختاری; AcNPV; Autographa californica nuclear polyhedrosis virus; BAC; bacterial artificial chromosome; BEVS; baculovirus expression vector system; DNA; deoxyribonucleic acid; ds; double stranded; E. coli; Escherichia coli; YFP; yellow fluorescent protein; kb; ki