Keywords: BNab; broadly neutralising antibody; CTL; cytotoxic lymphocyte; DAA; direct-acting antiviral; HBV; hepatitis B virus; HCV; hepatitis C virus; HIV; human immunodeficiency virus; NGS; next generation sequencing; SGA; single genome amplification; SNP; single
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Keywords: AIDS; Acquired immunodeficiency syndrome; ART; Antiretroviral treatment; BDM; Birth-death-models; CRFs; Circulating recombinant forms; FSU; Former Soviet Union; HCV; Hepatitis C virus; HSV-2; Herpes simplex virus type v2; HPD; Higher posterior density; LT
Keywords: AIDS; Acquired immune deficiency syndrome; ART; Antiretroviral treatment; CDC; United States (US) Centers for Disease Control and Prevention; CRFs; Circulating recombinant forms; FSU; Former Soviet Union; HIV; Human immunodeficiency virus; MSM; Men who ha
Keywords: ARI; acute respiratory infection; LRTI; lower respiratory tract infection; URTI; upper respiratory tract infection; HRV; human rhinoviruses; RSV; respiratory syncytial virus; Flu; influenza; PIV; parainfluenza; AdV; adenovirus; hMPV; human metapneumovirus
Keywords: VHSV; Substitution rate; TMRCA; Divergence;
Keywords: DENV; dengue virus; DF; dengue fever; DHF; dengue hemorrhagic fever; E; envelope; G; genotype; ADE; antibody-dependent enhancement; MAb; monoclonal antibody; NJ; neighbor-joining; MCMC; Markov Chain Monte Carlo; BEAST; Bayesian Evolutionary Analysis by Sa
Keywords: CNP; clusters of nucleotide polymorphisms; COG; clusters of orthologous groups; DLV; double locus variant; H. pylori; Helicobacter pylori; ISR; interspersed sequences of the recipient; MLSA; multilocus sequence analysis; omp; outer membrane protein; r/m;
Keywords: IHNV; Substitution rate; TMRCA;
Tracing the emerging genotypes of human respiratory syncytial virus in Beijing by evolution analysis of the attachment glycoprotein (G) gene
Keywords: Human respiratory syncytial virus; Novel genotype; Attachment glycoprotein G gene; Evolution; AdV; human adenovirus; ALRI; acute lower respiratory infection; BSP; Bayesian skyline plot; DFA; direct immunofluorescence; EPS; effective sample size; FEL; fixe
Phylogenetic position of the white-cheeked macaque (Macaca leucogenys), a newly described primate from southeastern Tibet
Keywords: BI; Bayesian inference; cyt b; cytochrome b; MCMC; Markov chain Monte Carlo; ML; maximum likelihood; Mya; million years ago; mtDNA; mitochondrial DNA; PCRs; polymerase chain reactions; TMRCA; the most recent common ancestor; TSPY; the paternally inherited
Complex reassortment events of unusual G9P[4] rotavirus strains in India between 2011 and 2013
Keywords: VP; viral protein; NSP; non-structural protein; G; the suffix for the VP7 genotype deriving from glycoprotein; P; the suffix for the VP4 genotype deriving from protease-sensitive protein; I; the suffix for the VP6 genotype deriving from intermediate capsi
Genomic constellation and evolution of Ghanaian G2P[4] rotavirus strains from a global perspective
Keywords: RVA; Rotavirus A; I; Intermediate capsid shell; R; RNA polymerase; C; Core shell; M; RNA-capping Methyltransferase; A; interferon Antagonist; N; octameric NTPase; T; Translation regulation; E; Enterotoxin; H; pHosphoprotein; VP; viral protein; NSP; non-st
Molecular epidemiology of HIV-1 infection in Europe: An overview
Keywords: AIDS; acquired immunodeficiency syndrome; CRF; circulating recombinant form; DRC; Democratic Republic of Congo; EU; European Union; EEA; European Economic Area; ECDC; European Centre for Disease Prevention and Control; ESAR; European Society for Translati
Molecular evolution of respiratory syncytial virus subgroup A genotype NA1 and ON1 attachment glycoprotein (G) gene in central Vietnam
Keywords: MCMC; Markov Chain Monte Carlo; AICM; Akaike's Information Criterion through MCMC; ESS; effective sample size; MCC; Maximum Clade Credibility; HPD; highest probability density; tMRCA; time to the most recent common ancestor; BSP; Bayesian Skyline Plot; EP
Rapid replacement of prevailing genotype of human respiratory syncytial virus by genotype ON1 in Beijing, 2012-2014
Keywords: HRSV; human respiratory syncytial virus; HPD; highest probability density; HVR; highly variable region; TMRCA; the time of most recent common ancestor; CIP; Capital Institute of Pediatrics; NPA; nasopharyngeal aspirate; PCR; polymerase chain reaction; RT;
Molecular epidemiology and evolutionary dynamics of Echovirus 3 serotype
Keywords: AIC; Akaike information criterion; AFP; acute flaccid paralysis; E; echovirus; EV; enterovirus; ESS; effective sample size; HEV; human enterovirus; MCMC; Markov Chain Monte Carlo; UTR; untranslated region; tMRCA; time to the most recent common ancestor; S
Changes in the distribution of lineage constellations of G2P[4] Rotavirus A strains detected in Japan over 32Â years (1980-2011)
Keywords: VP; viral protein; NSP; non-structural protein; G; the suffix for the VP7 genotype deriving from Glycoprotein; P; the suffix for the VP4 genotype deriving from Protease sensitive protein; I; the suffix for the VP6 genotype deriving from Intermediate capsi
Novel Kobuvirus species identified from black goat with diarrhea
Keywords: Caprine kobuvirus; Complete sequence; Goat; TMRCA;
Phylogeny and population dynamics of respiratory syncytial virus (Rsv) A and B
Keywords: AA; amino acid; BA; Buenos Aires; BF; Bayes factor; bp; base pairs; BSP; Bayesian skyline plot; FEL; fixed-effects likelihood; GARD; genetic algorithm recombination detection; GTR; general time reversible; HPD; highest posterior density; IFEL; internal fi
Genetic analysis of human rhinovirus species A to C detected in patients with acute respiratory infection in Kumamoto prefecture, Japan 2011-2012
Keywords: AdV; adenovirus; ARI; acute respiratory infection; ESS; effective sample size; EV; enterovirus; FEL; fixed effects likelihood; GTR; general time reversible; HA; hemagglutinin; HBoV; human bocavirus; HMPV; human metapneumovirus; HPD; highest posterior dens
Transmitted drug resistance and phylogenetic analysis of HIV CRF01_AE in Northern Vietnam
Keywords: ART; antiretroviral therapy; IDU; intravenous drug user; TDRM; transmitted drug resistance mutation; tMRCA; time of the most recent common ancestor; HIV; Vietnam; CRF01_AE; TDRM; tMRCA;
Reconstruction of the epidemic history of hepatitis B virus genotype D in Albania
Keywords: HBsAg; hepatitis B surface antigen; MCMC; Markov Chain Monte Carlo; HCWs; health care workers; IVDUs; intravenous drug users; MSMs; males having sex with males; P; HBV polymerase; PreS/S; HBV surface proteins; GTR+G; general time reversible with gamma dis
Molecular epidemiology and genetic history of European-type genotype 3 hepatitis E virus indigenized in the central region of Japan
Keywords: BSP; Bayesian skyline plot; MCMC; Markov chain Monte Carlo; BF; Bayes factor; TMRCA; time of the most recent common ancestor; Coalescent analysis; Genotype; Hepatitis E virus; Japan; Phylogenetic analysis; Subtype 3e;
Evolutionary dynamics of influenza A nucleoprotein (NP) lineages revealed by large-scale sequence analyses
Keywords: Influenza; Nucleoprotein (NP); Lineage; Substitution rate; TMRCA; Selection;
Evolutionary rates and timescale comparison of Chikungunya viruses inferred from the whole genome/E1 gene with special reference to the 2005–07 outbreak in the Indian subcontinent
Keywords: Chikungunya virus; Evolutionary rates; Divergence times; Bayesian; MCMC; tMRCA; India
Full length genomes of genotype IIIA Hepatitis A Virus strains (1995–2008) from India and estimates of the evolutionary rates and ages
Keywords: Hepatitis A Virus; Genotype III; Substitution rates; MCMC; tMRCA; India
Coalescent models reveal the relative roles of ancestral polymorphism, vicariance, and dispersal in shaping phylogeographical structure of an African montane forest robin
Keywords: Glacial cycles; NCA; Gene flow; MIGRATE; MDIV; TMRCA; Coalescent; Pogonocichla
Genetic features of Mongolian ethnic groups revealed by Y-chromosomal analysis
Keywords: mtDNA; mitochondrial DNA; STR; short-tandem-repeat; PCR; polymerase chain reaction; MJ; median-joining; TMRCA; time to the most common recent ancestor; MDS; multidimensional scaling; Y chromosome; Mongolian; Binary haplogroup; STR haplotype;