Keywords: سایت اتصال فاکتور رونویسی; Compound effect; Transcription factor binding site; Variant annotation; Bioinformatics; Genetic variants;
مقالات ISI سایت اتصال فاکتور رونویسی (ترجمه نشده)
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Keywords: سایت اتصال فاکتور رونویسی; CLD; collagen-like domain; CRD; carbohydrate recognition domain; FBD; fibrinogen-like domain; FCN; ficolin; indel; small insertion or deletion; MASP; MBL-associated serine protease; MBL; mannose-binding lectin; miRNA; microRNA; TFBS; transcription factor
Keywords: سایت اتصال فاکتور رونویسی; Childhood asthma; asthma phenotypes; gene expression profiling; microarray analysis; longitudinal study; ADD3; Adducin 3 (gamma); CAMP; Childhood Asthma Management Program; DE; Differentially expressed; FDR; False discovery rate; GR; Glucocorticoid recept
Keywords: سایت اتصال فاکتور رونویسی; Differential gene expression; Coexpression; Coregulation; Solanum tuberosum; Position weight matrix; Transcription factor binding site
Keywords: سایت اتصال فاکتور رونویسی; MI; myocardial infarction; LV; left ventricle; EX; exercise-training; SED; sedentary; TFBS; transcription factor binding site; GR; glucocorticoid receptor; FDR; false discovery rate; DE; differentially expressed; Cardiac hypertrophy; Physiological hypertr
Keywords: سایت اتصال فاکتور رونویسی; IRF-1; interferon regulatory factor-1; TF; transcription factor; TFBS; transcription factor binding site; YY1; Ying-Yang 1; STAT; signal transducer and activator of transcription; HS; hypersensitive; CIITA; class II transactivator; MHC; major histocompati
Assessment of DNA repair susceptibility genes identified by whole exome sequencing in head and neck cancer
Keywords: سایت اتصال فاکتور رونویسی; AAS; Amino Acid Substitution; BAM; Binary Alignment Map; BER; Base Excision Repair; CI; Confidence Interval; CVC; Cross Validation Consistency; dbSNP; Single Nucleotide Polymorphism database; DDG; The predicted free energy change value; DSBR; Double Stran
Long-term evolutionary DNA methylation dynamic of protein-coding genes and its underlying mechanism
Keywords: سایت اتصال فاکتور رونویسی; CDS; coding sequence; mCG; CG methylation; mCHG; CHG methylation; mCHH; CHH methylation; MYA; million years ago; RdDM; RNA-directed DNA methylation; siRNA; small interfering RNA; TAIR; The Arabidopsis Information Resource; TE; transposable element; TF; tr
Candidate novel long noncoding RNAs, MicroRNAs and putative drugs for Parkinson's disease using a robust and efficient genome-wide association study
Keywords: سایت اتصال فاکتور رونویسی; Single-nucleotide polymorphism; Parkinson's disease; Linkage disequilibrium; Genome-wide association studies; Long noncoding RNA; Transcription factor binding site;
Modulation of signaling mechanisms in the heart by thioredoxin 1
Keywords: سایت اتصال فاکتور رونویسی; Akt; protein kinase B; AMPK; Adenosine Monophosphate-activated Protein Kinase; Ang-II; Angiotensin-II; AP1; Activator protein 1 (AP-1); ASK1; Apoptosis Signal-regulating kinase; Atg4; Autophagy related-4; ATP; Adenosine Triphosphate; CDDP; cis-diammine-di
Polymorphisms of CYP2C8, CYP2C9 and CYP2C19 and risk of coronary heart disease in Russian population
Keywords: سایت اتصال فاکتور رونویسی; AA; arachidonic acid; CHD; coronary heart disease; CI; confidence intervals; CVD; cardiovascular disorder; EETs; epoxyeicosatrienoic acids; FDR; false discovery rate; HWE; Hardy-Weinberg equilibrium; LRT; log-likelihood ratio test; OR; odds ratio; PCR; po
Stratifying melanoma and breast cancer TCGA datasets on the basis of the CNV of transcription factor binding sites common to proliferation- and apoptosis-effector genes
Keywords: سایت اتصال فاکتور رونویسی; BAM; binary alignment/map; BRCA; breast cancer; CNV; copy number variation; SKCM; skin cutaneous melanoma; SNP; simple nucleotide polymorphism; SOM; supporting online material; TB; terabyte; TCGA; the cancer genome atlas; TFBS; transcription factor bindin
Intermittent hypoxia confers pro-metastatic gene expression selectively through NF-κB in inflammatory breast cancer cells
Keywords: سایت اتصال فاکتور رونویسی; ADAM19; a disintegrin and metalloproteinase 19; AP-1; activator protein-1; ARE; antioxidant response element; BSP; bisulfite sequencing PCR; CA9; carbonic anhydrase IX; CIH; chronic intermittent hypoxia; COX-2; cyclooxygenase-2; DCF; 2',7'-dichlorofluores
Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource
Keywords: سایت اتصال فاکتور رونویسی; ENCODE; encyclopaedia of DNA elements; TFBS; transcription factor binding site; ChIP; chromatin immunoprecipitation; ChIP-seq; ChIP followed by massively parallel sequencing; UV; ultraviolet; FAANG; functional annotation of animal genomes; UCSC; Universit
Toll-like receptor 7 variations are associated with the susceptibility to HCV infection among Chinese females
Keywords: سایت اتصال فاکتور رونویسی; HCV; hepatitis C virus; TLR7; Toll-like receptor 7; SNP; single nucleotide polymorphism; HCC; hepatocellular carcinoma; PRR; pattern recognition receptor; PAMP; pathogen associated molecular pattern; ssRNA; single strand RNA; HIV; human immunodeficiency v
The high-mobility group I-Y transcription factor is involved in cerebral ischemia and modulates the expression of angiogenic proteins
Keywords: سایت اتصال فاکتور رونویسی; ANGPT-1; angiopoietin 1; CCA; common carotid arteries; ChIP; chromatin immunoprecipitation; DAPI; 4â²,6-diamidino-2-phenylindole; GFAP; glial fibrillary acidic protein; HMGIY/HMGA1; high-mobility group I-Y protein; MTT; 3-(4,5-dimethylthiazol)-2,5-diphen
Prediction and experimental validation of a putative non-consensus binding site for transcription factor STAT3 in serum amyloid A gene promoter
Keywords: سایت اتصال فاکتور رونویسی; IL-6; Indirect readout; DNA structure-based energy; SAA1; STAT3; Transcription factor binding site;
Differential expression of the Gstp2 gene between the aboriginal species Mus spretus and the laboratory mouse Mus musculus
Keywords: سایت اتصال فاکتور رونویسی; GST; Glutathione S-transferase; GST-Pi; Pi class of GST enzymes; GSH; reduced glutathione; Mm; Mus musculus; Ms; Mus spretus; MmGstp2; Gstp2 gene of M. musculus; MsGstp2; Gstp2 gene of M. spretus; TF; transcription factor; TFBS; transcription factor bindi
The role of classical and non-classical HLA class I antigens in human tumors
Keywords: سایت اتصال فاکتور رونویسی; APM; antigen processing machinery; β2-m; β2-microglobulin; CALR; calreticulin; CANX; calnexin; CTL; cytotoxic T lymphocyte; DAC; 5-aza-2â²-deoxycytidine; ER; endoplasmic reticulum; ERAP; ER aminopeptidase associated with antigen processing; HC; heavy c
Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast
Keywords: سایت اتصال فاکتور رونویسی; Transcription factor binding site; Variable position; Co-occurring TFs; Gene expression
A Bayesian Scoring Scheme based Particle Swarm Optimization algorithm to identify transcription factor binding sites
Keywords: سایت اتصال فاکتور رونویسی; Particle Swarm Optimization; DNA motif; Transcription factor binding site; Neighborhood topology; Bayesian
Genome wide study of NF-Y type CCAAT boxes in unidirectional and bidirectional promoters in human and mouse
Keywords: سایت اتصال فاکتور رونویسی; DNA sequences; Transcription factor; Transcription factor binding site
Circadian transcription in liver
Keywords: سایت اتصال فاکتور رونویسی; Circadian clock; Transcription factor binding site; DNA array; Clock controlled genes
Identification of modules in Aspergillus niger by gene co-expression network analysis
Keywords: سایت اتصال فاکتور رونویسی; Aspergillus niger; Gene co-expression network; Co-expression; Transcriptional analysis; RNA profiling; Transcription factor binding site
Interaction of HCMV UL84 with C/EBPα transcription factor binding sites within oriLyt is essential for lytic DNA replication
Keywords: سایت اتصال فاکتور رونویسی; HCMV; DNA replication; OriLyt; Transcription factor binding site; C/EBPa
The GlxR regulon of the amino acid producer Corynebacteriumglutamicum: Detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model
Keywords: سایت اتصال فاکتور رونویسی; Corynebacterium glutamicum; Comparative genomics; Transcriptional regulatory network; Transcription factor binding site; Global regulator; GlxR
Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation
Keywords: سایت اتصال فاکتور رونویسی; gene regulation; nucleosome; transcription factor binding site
ZIFIBI: Prediction of DNA binding sites for zinc finger proteins
Keywords: سایت اتصال فاکتور رونویسی; C2H2 zinc finger protein; cis-Regulatory region; Transcription factor; Hidden markov model; Transcription factor binding site
Identification of interleukin-1 and interleukin-6-responsive genes in human monocyte-derived macrophages using microarrays
Keywords: سایت اتصال فاکتور رونویسی; Acute phase protein; Proinflammatory cytokine; Inflammatory transcriptome; Functional gene cluster analysis; Transcription factor binding site
Identification of phylogenetically conserved enhancer elements implicated in pancreas development in the WISP1 and CTGF orthologs
Keywords: سایت اتصال فاکتور رونویسی; TFBS; transcription factor binding site; CTGF; connective tissue growth factor; ESC; embryonic stem cell; RT-PCR; reverse transcription polymerase chain reaction; EST; expressed sequence tag; IGF; insulin-like growth factor; TSS; transcription starting si
Identification of the minimal promoter region of the mouse NKX5-3, a transcription factor implicated in eye development
Keywords: سایت اتصال فاکتور رونویسی; EMSA; electrophoretic mobility shift assay; cDNA; DNA complementary to RNA; PCR; polymerase chain reaction; DMEM; Dulbecco's modified Eagle's medium; PBS; phosphate-buffered saline; AP-2; activator protein 2; Sp1; specificity protein 1; SV40; simian virus
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator
Keywords: سایت اتصال فاکتور رونویسی; Corynebacterium glutamicum; Transcriptional regulatory network; Motif discovery; Transcription factor binding site; Global regulator; GlxR
Promoter analysis of TCDD-inducible genes in a thymic epithelial cell line indicates the potential for cell-specific transcription factor crosstalk in the AhR response
Keywords: سایت اتصال فاکتور رونویسی; 1AhR; aryl hydrocarbon receptor; DRE; dioxin response element; E2; 17β-estradiol; ER; estrogen receptor; HIF; hypoxia inducible factor; HRE; hypoxia response elements; PAX-4; paired box gene 4; PPARγ; peroxisome proliferative activated receptor, gamma;
Genome-wide effects of acute progressive feed restriction in liver and white adipose tissue
Keywords: سایت اتصال فاکتور رونویسی; Feed restriction; Energy metabolism; Peripheral rhythms; Food entrainment; Microarrays; RT-PCR; APFR; acute progressive feed restriction; WAT; white adipose tissue; TFBS; transcription factor binding site; TSS; transcription start site; SRE; sterol respon
Differential regulation of osteoadherin (OSAD) by TGF-β1 and BMP-2
Keywords: سایت اتصال فاکتور رونویسی; Osteoadherin; TGF-β1; BMP-2; Promoter; Osteoblast; Transcription factor binding site
Context dependent models for discovery of transcription factor binding sites
Keywords: سایت اتصال فاکتور رونویسی; Conditional position dependent motif model; Gibbs sampler; Markov model; Markov order determination; Transcription factor binding site
Elucidating effects of long-term expression of HIV-1 Nef on astrocytes by microarray, promoter, and literature analyses
Keywords: سایت اتصال فاکتور رونویسی; CNS; central nervous system; CD; cluster of differentiation; GO; gene ontology; G418; Geneticin; GTPase; guanidin triphosphatase; NCBI; National Center for Biotechnology Information; HIV-1; Human Immunodeficiency Virus-1; rev, nef, tat; HIV-1 encoded regu
Cloning and expression of the reverse transcriptase component of pufferfish (Fugu rubripes) telomerase
Keywords: سایت اتصال فاکتور رونویسی; aa; amino acids; bp; base pairs; cDNA; complementary DNA; cTERT; chicken telomerase reverse transcriptase; dTERT; dog telomerase reverse transcriptase; hamTERT; hamster telomerase reverse transcriptase; hTERT; human telomerase reverse transcriptase; kb; k
Functional characterization of the human SOX3 promoter: identification of transcription factors implicated in basal promoter activity
Keywords: سایت اتصال فاکتور رونویسی; CAT; chloramphenicol acetyltransferase; tsp; transcription start point; nt; nucleotide(s); bp; base pair(s); SOX genes; SRY-related HMG-box genes; EC; embryonal carcinoma cells; RA; retinoic acid; Sp1; specificity protein 1; NF-Y; nuclear factor Y; USF1;
A statistical analysis of the TRANSFAC database
Keywords: سایت اتصال فاکتور رونویسی; Transcription factor binding site; TRANSFAC®; Gene regulation;