Keywords: Major depression; Cognitive deficits; Proteomics; Gene expression; WGCNA;
مقالات ISI (ترجمه نشده)
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Keywords: Neuroblastoma; MYCN amplification; 11q deletion; 1p deletion; WGCNA;
Keywords: MS; mass-spectrometry; NMR; nuclear magnetic resonance spectroscopy; MRS; magnetic resonance spectroscopy; D-2-HG; D-2-hydroxyglutarate; α-KG; α-ketoglutarate; OAA; oxaloacetic acid; TET; ten-eleven translocation; GSH; glutathione; ROS; reactive oxygen
Keywords: AUD; Alcohol use disorder; FDA; Food and Drug Administration; MOR; Mu opioid receptor; DOR; Delta opioid receptor; KOR; Kappa opioid receptor; NMDA; N-methyl-d-aspartate; GABA; Gaba amino butyric acid; DSM-IV; Diagnostic and statistical measurement IV; PA
Keywords: Advanced villous maturity; Delayed villous maturity; Gene signature; Histology; Microarray; Placenta; GA; gestational age; AVM; advanced villous maturation; DVM; delayed villous maturation; NM; normal maturation; PE; preeclampsia; WGCNA; weighted gene cor
Keywords: ACC; American College of Cardiology; acLDL; acetylated-low density lipoprotein; AHA; American Heart Association; ALL; acute lymphoblastic leukemia; ANG1; angiopoietin 1; ATMP; Advanced Therapy Medicinal Product; BM; bone marrow; BMSC; bone marrow-derived
Keywords: Psoriasis; Coexpression; WGCNA; System biology; Random forest; Classifier; Biomarker
Keywords: Human brain; Whole-transcriptome analysis; WGCNA; NBIA; Iron metabolism;
Keywords: Gene expression data; WGCNA; Cancer recognition
Keywords: asthma; integrative omics; lung function; metabolome; transcriptome; BDR; bronchodilator response; CAMP; Childhood Asthma Management Program; HILIC; hydrophilic interaction liquid chromatography; MS; mass spectrometry; QC; quality control; SNP; single-nuc
Network analysis reveals the co-expression of sugar and aroma genes in the Chinese white pear (Pyrus bretschneideri)
Keywords: SS, SUS; sucrose synthase; INV; invertase; SPS; sucrose phosphate synthase; SDH; sorbitol dehydrogenase; S6PDH; sorbitol-6-phosphate dehydrogenase; SUTs; sucrose transporters; HTs; hexose transporters; SOTs; sorbitol transporters; LOX; lipoxygenase; HPL;
Co-expression network analysis of peripheral blood transcriptome identifies dysregulated protein processing in endoplasmic reticulum and immune response in recurrent MDD in older adults
Keywords: Depression; Major depressive disorder; MDD; Gene expression; WGCNA; Transcriptome;
A transcriptomic comparison of theca and granulosa cells in chicken and cattle follicles reveals ESR2 as a potential regulator of CYP19A1 expression in the theca cells of chicken follicles
Keywords: Chicken; Theca; Granulosa; WGCNA; CYP19A1; ESR2;
Modular organization analysis of specific naringin/neoeriocitrin related gene expression induced by UVC irradiation in Drynaria roosii
Keywords: bHLH; basic helix-loop-helix; C3H; p-coumarate 3-hydroxylase; C3'H; p-coumarate 3â²-hydroxylase; C4H; cinnamate 4-hydroxylase; CHI; chalcone isomerase; CHS; chalcone synthase; 4CL; 4-coumarate CoA ligase; CNR; new rhizome; CNRCK; new rhizome treated fo
Co-expression modules construction by WGCNA and identify potential prognostic markers of uveal melanoma
Keywords: Uveal melanoma; WGCNA; Gene expression; Prognostic markers;
Integration of summary data from GWAS and eQTL studies identified novel causal BMD genes with functional predictions
Keywords: BMD; bone mineral density; GWAS; genome-wide association studies; eQTL; expression quantitative trait loci; SMR; summary data-based Mendelian randomization; HEIDI; heterogeneity in dependent instruments; LD; linkage disequilibrium; WGCNA; weighted gene co
Identification of novel variants associated with osteoporosis, type 2 diabetes and potentially pleiotropic loci using pleiotropic cFDR method
Keywords: Osteoporosis; Type 2 diabetes; Pleiotropy; cFDR; WGCNA;
Gene co-expression analysis identifies gene clusters associated with isotropic and polarized growth in Aspergillus fumigatus conidia
Keywords: A. fumigatus; Germination; RNA-Seq; Isotropic growth; Polarized growth; CI; confidence interval; DE; differential expression; WGCNA; weighted gene co-expression network analysis; GO; gene ontology; qRT-PCR; quantitative reverse transcription polymerase ch
DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome
Keywords: Epigenetics; Intestinal Epithelium; Gut Microbiota; Human Intestinal Organoids; AC; ascending colon; AUC; area under the curve; CD; Crohn's disease; DMP; differentially methylated position; DEG; differentially expressed gene; DMR; differentially methyla
Databases/Web ServersBFDCA: A Comprehensive Tool of Using Bayes Factor for Differential Co-Expression Analysis
Keywords: DC; differential co-expression; DE; differential expression; BFDCA; Bayes Factor approach for Differential Co-expression Analysis; WGCNA; Weighted Gene Coexpression Network Analysis; ALL; acute lymphoblastic leukemia; LOOCV; leave-one-out cross-validation
Co-expression network analysis identified six hub genes in association with progression and prognosis in human clear cell renal cell carcinoma (ccRCC)
Keywords: ccRCC; clear cell renal cell carcinoma; HPA; human protein atlas; GSEA; enrichment analysis and gene set enrichment; WGCNA; weighted gene co-expression network analysis; TCGA; the cancer genome atlas; DEGs; differentially expressed genes; TOM; topological
Long noncoding RNA LINC01186, regulated by TGF-β/SMAD3, inhibits migration and invasion through Epithelial-Mesenchymal-Transition in lung cancer
Keywords: lncRNAs; long noncoding RNAs; EMT; Epithelial-Mesenchymal-Transition; TGF-β; transforming growth factor β; ChIP-Seq; Chromatin Immunoprecipitation Sequencing; qRT-PCR; quantitative real-time reverse transcription polymerase chain reaction; GSEA; gene se
A systems approach to renal inflammation in SLE
Keywords: SLE; Systemic Lupus Erythematosus; LN; Lupus Nephritis; RNA; Ribonucleic Acid; Anti-sm RNP; Anti-smith RiboNucleo Protein; TALE; Tool for Approximate LargE graph matching; IgAN; IgA Nephropathy; HT; Hypertensive; SOM; Self-Organizing Map; SVD; Singular Va
Baked corn (Zea mays L.) and bean (Phaseolus vulgaris L.) snack consumption lowered serum lipids and differentiated liver gene expression in C57BL/6 mice fed a high-fat diet by inhibiting PPARγ and SREBF2
Keywords: BW; body weight; HFD; high-fat diet; SD; standard diet; FDR; false discovery rate; WGCNA; Weighted Gene Coexpression Network Analysis; IPA; Ingenuity Pathway Analysis; Baked snack; Corn/bean; C57BL/6 mice; Diet-induced hyperlipidemia; Lipid metabolism; Ob
Co-expressed miRNAs in gastric adenocarcinoma
Keywords: miRNAs; Gastric adenocarcinoma; WGCNA; Node degree;
Weighted gene co-expression network analysis of pneumocytes under exposure to a carcinogenic dose of chloroprene
Keywords: Chloroprene; Lung cancer; WGCNA; Gene modules; Hub genes;
A co-expression network analysis reveals lncRNA abnormalities in peripheral blood in early-onset schizophrenia
Keywords: lncRNAs; Long non-coding RNAs; EOS; Early-onset schizophrenia; TDCs; Typically developing controls; WGCNA; Weighted gene co-expression network analysis; GO; Gene Ontology; CCA; Canonical correlation analysis; SCZ; Schizophrenia; DISC2; Disrupted in Schizo
PPAR agonists regulate brain gene expression: Relationship to their effects on ethanol consumption
Keywords: PPAR; Microarray; Alcohol; Prefrontal cortex; Amygdala; Mice; PPAR; Peroxisome proliferator-activated receptor; RXR; Retinoid X receptor; CNS; Central nervous system; VTA; Ventral tegmental area; PFC; Prefrontal cortex; WGCNA; Weighted gene co-expression
Transcriptome analysis of HIV-infected peripheral blood monocytes: Gene transcripts and networks associated with neurocognitive functioning
Keywords: HIV-associated neurocognitive disorder; transcriptome; Monocyte; IL6R; gene expression; WGCNA;
Systematic characterization of hypothetical proteins in Synechocystis sp. PCC 6803 reveals proteins functionally relevant to stress responses
Keywords: CAI; codon adaptation index; CH; chaperone/degradation proteins; CMR; Comprehensive Microbial Resource; DTT; dithiothreitol; EDTA; Ethylenediaminetetraacetic acid; iTRAQ; isobaric tag for relative and absolute quantification; HP; hypothetical proteins; LC