کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
1163731 1490946 2015 9 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Multiple ligand detection and affinity measurement by ultrafiltration and mass spectrometry analysis applied to fragment mixture screening
ترجمه فارسی عنوان
اندازه گیری لیگاند چندگانه و اندازه گیری وابستگی با استفاده از روش اولترافیلتراسیون و تجزیه و تحلیل طیف سنجی جرم برای غربالگری قطعه مخلوط
موضوعات مرتبط
مهندسی و علوم پایه شیمی شیمی آنالیزی یا شیمی تجزیه
چکیده انگلیسی


• The accuracy of Kd determination for a ligand mixture by UF-LC/MS was examined.
• We developed a new workflow of UF-LC/MS based on unbound fraction analysis (UFA).
• The UFA workflow afforded rapid and sensitive detection of low-affinity ligands.
• Fragment ligands discovered by the UFA method were validated by SPR analysis.
• Binding affinities of multiple fragments were determined by UF-LC/MS analysis.

Binding affinity of a small molecule drug candidate to a therapeutically relevant biomolecular target is regarded the first determinant of the candidate's efficacy. Although the ultrafiltration-LC/MS (UF-LC/MS) assay enables efficient ligand discovery for a specific target from a mixed pool of compounds, most previous analysis allowed for relative affinity ranking of different ligands. Moreover, the reliability of affinity measurement for multiple ligands with UF-LC/MS has hardly been strictly evaluated. In this study, we examined the accuracy of Kd determination through UF-LC/MS by comparison with classical ITC measurement. A single-point Kd calculation method was found to be suitable for affinity measurement of multiple ligands bound to the same target when binding competition is minimized. A second workflow based on analysis of the unbound fraction of compounds was then developed, which simplified sample preparation as well as warranted reliable ligand discovery. The new workflow implemented in a fragment mixture screen afforded rapid and sensitive detection of low-affinity ligands selectively bound to the RNA polymerase NS5B of hepatitis C virus. More importantly, ligand identification and affinity measurement for mixture-based fragment screens by UF-LC/MS were in good accordance with single ligand evaluation by conventional SPR analysis. This new approach is expected to become a valuable addition to the arsenal of high-throughput screening techniques for fragment-based drug discovery.

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ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Analytica Chimica Acta - Volume 886, 30 July 2015, Pages 98–106
نویسندگان
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