Identification of the HIV-1 packaging RNA sequence (Ψ) as a major determinant for the translation inhibition conferred by the HIV-1 5′ UTR

The HIV-1 5′ untranslated region (UTR) contains conserved sequences and unique structural motifs associated with many steps in virus replication. Because unspliced HIV mRNA containing the full-length UTR serves as a template for replication and transcription as well as packaging genomic RNA into virion, it has been postulated that the UTR may play a role in translational regulation. However, the effect and the region(s) responsible for translation control remain controversial. We used deletion mutations of the 5′ UTR region in both cell-based and in vitro assays to determine if secondary structural elements within the 5′ UTR confer translation inhibition, and to identify which of these elements are involved. The results indicate clearly that the entire HIV-1 5′ UTR confers translation inhibition in vitro and in cells; the Psi (Ψ) region specifically has the most translation inhibitory activity among the highly-structured elements in the HIV-1 5′ UTR. Moreover, it was found that the SL4 structure in the Psi (Ψ) region is the major determinant of translation inhibition, and that elimination of the SL4 RNA sequence led to increased translation. The results suggest a functional role for the Psi element and the SL4 structure in the translational control of HIV-1 full-length mRNA.

► The effect of HIV-1 5′ UTR on translation inhibition activity.
► HIV-1 Packaging RNA confers a strong translation inhibition within living cells.
► HIV-1 Psi is a major determinant for the translation inhibition by HIV-1 5′ UTR.