The importance of an extra loop in the B-domain of an α-amylase from B. stearothermophilus US100

To provide insight into the potential role of a loop in domain B of several bacterial α-amylases, molecular and structural investigation of Bacillus stearothermophilus α-amylase (Amy US100) was used as a model. Combination deletion mutants of G213, I214 and G215, described as a loop-forming on the surface bacterial amylases, were subjected to biochemical and structural investigation. Thermoactivity, thermostability as well calcium requirement were studied for each mutant.Thus, deletion of one residue differently affects only the thermostability. Shortening the loop by deletion of G213–I214 or I214–G215 improved the thermostability and reduces calcium requirement. However, the deletion of three residues has a negative effect on thermostability and reduces the optimal temperature by 17 °C.The structural investigation showed that stabilizing deletions contribute to reinforce the architecture of domain B and the active site conformation. The deletion of three residues reduces the flexibility of this region and abolishes a denser hydrogen bond network.