کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
503198 863748 2012 8 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Dynamic load balancing algorithm for molecular dynamics based on Voronoi cells domain decompositions
موضوعات مرتبط
مهندسی و علوم پایه شیمی شیمی تئوریک و عملی
پیش نمایش صفحه اول مقاله
Dynamic load balancing algorithm for molecular dynamics based on Voronoi cells domain decompositions
چکیده انگلیسی

We present a new algorithm for automatic parallel load balancing in classical molecular dynamics. It assumes a spatial domain decomposition of particles into Voronoi cells. It is a gradient method which attempts to minimize a cost function by displacing Voronoi sites associated with each processor/sub-domain along steepest descent directions. Excellent load balance has been obtained for quasi-2D and 3D practical applications, with up to 440⋅106440⋅106 particles on 65,536 MPI tasks.

ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Computer Physics Communications - Volume 183, Issue 12, December 2012, Pages 2608–2615
نویسندگان
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