کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
5518288 1543920 2016 5 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Genomics/technical resourcesHaving a BLAST: Searchable transcriptome resources for the gilthead sea bream and the European sea bass
موضوعات مرتبط
مهندسی و علوم پایه علوم زمین و سیارات علوم زمین و سیاره ای (عمومی)
پیش نمایش صفحه اول مقاله
Genomics/technical resourcesHaving a BLAST: Searchable transcriptome resources for the gilthead sea bream and the European sea bass
چکیده انگلیسی

The gilthead sea bream (Sparus aurata) and the European sea bass (Dicentrarchus labrax) are the most important aquaculture species in the Mediterranean Sea and since the last decade it has been seen an exponential increase in their available molecular resources. In order to improve accessibility to transcriptome resources, Expressed Sequence Tags (ESTs), mRNA sequences and raw read sequences were assembled and deposited in BLAST queryable databases. The publicly available sea bream and sea bass sequences (6.4 and 247.5 million) generated 45,094 and 68,117 assembled sequences, with, respectively, arithmetic mean size of 998 and 2125 bp and N50 of 1302 and 2966 bp. The assemblies will be regularly updated and new analytical tools added to the web server at http://sea.ccmar.ualg.pt.

ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Marine Genomics - Volume 30, December 2016, Pages 67-71
نویسندگان
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