Assessment and mitigation of DNA loss utilizing centrifugal filtration devices

Maximizing DNA recovery during its isolation can be vital in forensic casework, particularly when DNA yields are expected to be low, such as from touch samples. Many forensic laboratories utilize centrifugal filtration devices to purify and concentrate the DNA; however, DNA loss has been reported when using them. In this study, all centrifugal filtration devices tested caused substantial DNA loss, affecting low molecular weight DNA (PCR product) somewhat more than high molecular weight DNA. Strategies for mitigating DNA loss were then examined, including pre-treatment with glucose, glycogen, silicone (RainX®), bovine serum albumin, yeast RNA, or high molecular weight DNA. The length of pre-treatment and UV irradiation of pre-treatment reagents were also investigated. Pre-treatments with glucose and glycogen resulted in little or no improvement in DNA recovery, and most or all DNA was lost after silicone pre-treatment. Devices pre-treated with BSA produced irregular and uninterpretable quantitative PCR amplification curves for the DNA and internal PCR control. On the other hand, nucleic acid pre-treatments greatly improved recovery of all DNAs. Pre-treatment time and its UV irradiation did not influence DNA recovery. Overall, the results show that centrifugal filtration devices trap DNA, yet their proper pre-treatment can circumvent that loss, which is critical in the case of low copy forensic DNA samples.