کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
7563719 | 1491560 | 2012 | 9 صفحه PDF | دانلود رایگان |
عنوان انگلیسی مقاله ISI
In silico identification of human pregnane X receptor activators from molecular descriptors by machine learning approaches
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موضوعات مرتبط
مهندسی و علوم پایه
شیمی
شیمی آنالیزی یا شیمی تجزیه
پیش نمایش صفحه اول مقاله
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چکیده انگلیسی
In the current study, computational models for hPXR activators and hPXR non-activators were developed using support vector machine (SVM), k-nearest neighbor (k-NN), and artificial neural networks (ANN) algorithms. 73 molecular descriptors used for hPXR activator and hPXR non-activator prediction were selected from a pool of 548 descriptors by using a multi-step hybrid feature selection method combining Fischer's score and Monte Carlo simulated annealing method. The y-scrambling method was used to test if there is a chance correlation in the developed SVM model. In the meantime, five-fold cross validation of these machine learning methods results in the prediction accuracies of 87.2-92.5% for hPXR activators and 73.8-87.8% for hPXR non-activators, and the prediction accuracies for external test set are 93.8-95.8% for hPXR activators and 86.7-92.8% for hPXR non-activators. Our study suggested that the tested machine learning methods are potentially useful for hPXR activators identification.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Chemometrics and Intelligent Laboratory Systems - Volume 118, 15 August 2012, Pages 271-279
Journal: Chemometrics and Intelligent Laboratory Systems - Volume 118, 15 August 2012, Pages 271-279
نویسندگان
Hanbing Rao, Yanying Wang, Xianyin Zeng, Xianxiang Wang, Yong Liu, Jiajian Yin, Hua He, Feng Zhu, Zerong Li,