کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
8293631 1536746 2018 6 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Efficient potential of mean force calculation from multiscale simulations: Solute insertion in a lipid membrane
ترجمه فارسی عنوان
پتانسیل کارآمد محاسبه میانگین نیرو از طریق شبیه سازی چندسطحی: قرار دادن حل در یک غشای چربی
موضوعات مرتبط
علوم زیستی و بیوفناوری بیوشیمی، ژنتیک و زیست شناسی مولکولی زیست شیمی
چکیده انگلیسی
The determination of potentials of mean force for solute insertion in a lipid membrane by means of all-atom molecular dynamics simulations is often hampered by sampling issues. Recently, a multiscale method has been proposed to leverage the conformational ensemble of a lower-resolution model as starting point for higher resolution simulations. In this work, we analyze the efficiency of this method by comparing its predictions for propanol insertion into a lipid membrane against conventional atomistic umbrella sampling simulation results. The multiscale approach is confirmed to provide accurate results with a gain of one order of magnitude in computational time. We then investigate the role of the coarse-grained representation. We find that the accuracy of the results is tightly connected to the presence of a good configurational overlap between the coarse-grained and atomistic models-a general requirement when developing multiscale simulation methods.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Biochemical and Biophysical Research Communications - Volume 498, Issue 2, 29 March 2018, Pages 282-287
نویسندگان
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