Keywords: توالی کدگذاری; RNA-seq; RNA sequencing; GO; gene ontology; KEGG; Kyoto Encyclopedia of Genes & Genome, GENES database; GPCR; G-protein-coupled receptor; Poecilobdella javanica; P. javanica; Hirudo medicinalis; H. medicinalis; Haemadipsa cavatuses; H. cavatuses; Whitmani
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Keywords: توالی کدگذاری; ACO; aconitase; ADA2; adenosine deaminase 2; AGO1; Argonaute1; ANR1; Arabidopsis nitrate regulated 1; AP2; apetala 2; ARR9; type A response regulator 9; ASN; asparagine synthetase; BST1; bristled1; C2H2; Cysteine 2 Histidine 2; C4 and C8; transcriptomic p
Keywords: توالی کدگذاری; Phylogenetic analysis; Gene ontology annotation; Promoter analysis; Expression profiles analysis; bHLH; basic helix-loop-helix; PEG; polyethylene glycol; ABA; abscisic acid; MeJA; methyl jasmonate; qRT-PCR; quantitative real-time PCR; Ks; number of synony
Keywords: توالی کدگذاری; Evolutionary history; Positive selection; Virtual mutation; Molecular modification; Sesquiterpenoids; STS; Sesquiterpene synthase; AsSTS; Aquilaria sinensis sesquiterpene synthase; GhDCS; Gossypium hirsutum (+)-δ-cadinene synthase; AaADS; Artemisia annua
Keywords: توالی کدگذاری; ANOVA; Analysis of variance; BHI; Brain heart infusion; BLAST; Basic Local Alignment Search Tool; CC; Clonal complex; CDS; Coding sequence; ELISA; Enzyme-linked immunosorbent assay; MLST; Multilocus sequence typing; NGS; Next-generation sequencing; PCR; P
Keywords: توالی کدگذاری; CDS; coding sequence; DOOR; Database of prOkaryotic OpeRons; EMOTE; Exact Mapping of Transcription Ends; HMM; hidden Markov model; IP; immunoprecipitation; NN; neural network; RACE; Rapid-Amplification of cDNA Ends; RBP; RNA-binding protein; RF; random fo
Keywords: توالی کدگذاری; ADIG; adipogenin; PPARγ; peroxisome proliferator activated receptor γ; Hh; hedgehog; siRNA; small interfering RNA; TNFα; Tumor Necrosis Factor α; Mw; molecular weight; pI; theoretical isoelectric point; CDS; coding sequence; qPCR; quantitative real ti
Keywords: توالی کدگذاری; 20SPβ4; 20S proteasome beta 4 subunit; AAT; Na+-dependent neutral amino acid transporter; ABA; Abscisic acid; ACC; acetyl-CoA carboxylase; ACCD; 1-aminocyclopropane-1-carboxylate deaminase; ALD; Fructose-bisphosphate aldolase; AP; aspartic proteinase; AP
Keywords: توالی کدگذاری; ACL5; Acaulis5; ADC; arginine decarboxylase; AIH; Agmatine iminohydrolase; AMADH; amino aldehyde dehydrogenase; AO; aminooxidases; Cad; cadaverine; CDS; coding sequence; CPA; N-carbamoyl-Put amidohydrolase; CuAO; Copper containing amine oxidases; dSAM; de
Keywords: توالی کدگذاری; CDS; coding sequence; LDA; linear discriminant analysis; QDA; quadratic discriminant analysis; RF; random forest; ROC; receiving operating characteristics; PR; precision recall; AUC-ROC; area under ROC curve; AUC-PR; area under PR curve; TPR; true positiv
Keywords: توالی کدگذاری; AA; amino acid; ND; normalized difference; Mya; million years ago; dS/dN; number of synonymous substitutions per synonymous site to the number of non-synonymous substitutions per non-synonymous site; CDS; coding sequence; Amino acid gain/loss; Amino acid
Keywords: توالی کدگذاری; CDD; Conserved Domains; CDS; coding sequence; DEF; duck embryo fibroblast; dViperin; duck viperin; HA; Hemagglutination; hpi; hours post-infection; IFN; interferon; ISG; interferon stimulated gene; LDA; limiting dilution analysis; MOI; multiple of infecti
Keywords: توالی کدگذاری; AOTF; acousto-optic tunable filter; BAC; bacterial artificial chromosome; CDS; coding sequence; CMV; cytomegalovirus; DOR; δ-opioid receptor; DR; dorsal raphe nucleus; DRG; dorsal root ganglia; EGFP; enhanced green fluorescent protein; ER; endoplasmic re
Keywords: توالی کدگذاری; A; adenine; ACMG; American College of Medical Genetics; Ala; alanine; Asp; aspartic acid; BCL2L12; B-cell lymphoma-2-like protein 12; BRCA1; breast cancer-1 gene; C; cytosine; CCDS; Consensus Coding Sequence; CD; circular dichroism; CDC; coding sequence;
Keywords: توالی کدگذاری; Homeodomain leucine zipper IV; Tomato; Expression profile; Phytohormone; Abiotic stress; SlHDZIV; tomato HD-Zip IV; qRT-PCR; Quantitative polymerase chain reaction; ABA; Abscisic acid; IBA; 4-(indolyl)-butyric acid; JA; jasmonic acid; GA; Gibberellic acid
Keywords: توالی کدگذاری; Transgenic crops; Labeling threshold; Adventitious presence; Yellow corn; GMO; genetically modified organism; PCR; polymerase chain reaction; qPCR; real-time PCR; dwb; dry weight basis; CaMV; cauliflower mosaic virus; CDS; coding sequence; CRM; certified
Keywords: توالی کدگذاری; AOA; alternative oxidase antibody; AOX; alternative oxidase; Arg; argenine; ATP; adenosine triphosphate; BLAST; basic local alignment search tool; Bya; billion years ago; CDS; coding sequence; COX; cytochrome c oxidase; Cys; cysteine; ETC; electron transp
Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids
Keywords: توالی کدگذاری; Dual RNAs; RNA secondary structures; Coding sequence; RNAz; RNAcode;
Effects of fasting and re-feeding on mstn and mstnb genes expressions in Cranoglanis bouderius
Keywords: توالی کدگذاری; MSTN; myostatin; MSTNb; myostatinb; TGF-β; transforming growth factor-β; MS222; 3-aminobenzoic acid ethyl ester methane sulfonate; S.E.; standard error; Fig.; Figure; Tab.; Table; pI; theoretical isoelectic point; MW; molecular weight; CDS; coding seque
Overexpression and RNAi-mediated downregulation of TwIDI regulates triptolide and celastrol accumulation in Tripterygium wilfordii
Keywords: توالی کدگذاری; Tw; Tripterygium wilfordii; OE; overexpression; RNAi or Ri; RNA interference; IDI; isopentenyl diphosphate isomerase; CDS; coding sequence; TwIDI; Overexpression; RNAi; Triptolide; Celastrol; Gene gun;
G0S2a1 (G0/G1 switch gene 2a1) is downregulated by TNF-α in grass carp (Ctenopharyngodon idellus) hepatocytes through PPARα inhibition
Keywords: توالی کدگذاری; ATGL; adipose triglyceride lipase; HSL; hormone-sensitive lipase; MGL; monoacylglycerol lipase; ORF; open reading frame; TAG; triacylglycerol; FA; fatty acid; G0S2; G0/G1 switch gene 2; PPAR; Proliferator-Activated Receptor; TSGD; teleost-specific genome
A novel lentiviral scFv display library for rapid optimization and selection of high affinity antibodies
Keywords: توالی کدگذاری; Agtuzumab; Lentivirus scFv display library; Hotspot mutagenesis; Optimization library; AGR2; anterior gradient 2; CDR; Complementary Determining Regions; CopGFP; copepod Pontellina plumata Green Fluorescence Protein; scFv; single chain fragment variable;
Isolation and characterization of porcine PILRB gene and its alternative splicing variants
Keywords: توالی کدگذاری; AS; alternative splicing; cDNA; complementary DNA; CDS; coding sequence; CHX; cycloheximide; NMD; nonsense-mediated mRNA decay; PCR; polymerase chain reaction; PILR; paired immunoglobulin-like type 2 receptor; PTC; premature termination codon; qPCR; quant
Comparative transcriptome profiling of genes and pathways involved in leaf-patterning of Clivia miniata var. variegata
Keywords: توالی کدگذاری; PET; Photosynthetic electron transport; Cmvv; Clivia miniata var. variegata; cpDNA; Chloroplast DNA; CTP; Chloroplast transit peptide; IR; Large inverted repeat; LSC; Large single copy regions; SSC; Small single copy regions; YSs; Yellow stripes of leaves
Hyperoside and let-7a-5p synergistically inhibits lung cancer cell proliferation via inducing G1/S phase arrest
Keywords: توالی کدگذاری; SCLC; small-cell lung cancer; NSCLC; non-small-cell lung cancer; miRNA; microRNA; 3â²UTR; 3â²untranslated region; 5â²UTR; 5â²untranslated region; CDS; coding sequence; CDK6; cyclin-dependent kinase 6; CDK4; cyclin-dependent kinase 4; CCND1; cyclin D1;
Peculiar genes for thermostable bifunctional catalase-peroxidases in Chaetomium thermophilum and their molecular evolution
Keywords: توالی کدگذاری; CDS; coding sequence; GB; GenBank; katG; gene coding for a bifunctional catalase-peroxidase; HGT; horizontal gene transfer; ML; maximum likelihood phylogenetic method; PDB; protein data bank; PolA; polyadenylation site; ROS; reactive oxygen species; RT-qP
Identification of BABY BOOM homolog in bread wheat
Keywords: توالی کدگذاری; BABY BOOM; Wheat; Embryogenesis; Microspores; Double haploids; TaBBM; Triticum aestivum BABY BOOM; AP2; APETALA 2 domain; IMC; isolated microspore culture; DH; double haploid; CPP; cell penetrating peptide; LEC1; LEAFY COTYLEDON1; LEC2; LEAFY COTYLEDON2;
Barhl1 is required for the differentiation of inner ear hair cell-like cells from mouse embryonic stem cells
Keywords: توالی کدگذاری; mESCs; mouse embryonic stem cells; iPSCs; induced pluripotent stem cells; CRISPR; clustered regularly interspaced short palindromic repeat; Cas9; CRISPR- associated protein 9; MEF; mouse embryonic fibroblast; EBs; embryoid bodies; EPL; early primitive ect
Insights into the multifunctional role of natural killer enhancing factor-A (NKEF-A/Prx1) in big-belly seahorse (Hippocampus abdominalis): DNA protection, insulin reduction, H2O2 scavenging, and immune modulation activity
Keywords: توالی کدگذاری; MTT; 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide; BLAST; Basic Local Alignment Search Tool; CDS; coding sequence; CFU; colony forming units; CDD; conserved domain search program; Cys; cysteines; DTT; dithiothreitol; LPS; lipopolysacchari
Molecular characterization, expression and cellular localization of CYP17 gene during geese (Anser cygnoides) follicular development
Keywords: توالی کدگذاری; SWF; Small White Follicle; LWF; Large White Follicle; FSH; Follicle Stimulating Hormone; LH; Luteinizing Hormone; AR; Androgen Receptor; GC; Granulosa Cell; TE; Theca Extera; TI; Theca Intera; CYP17; 17α-Hydroxylase/17,20-lyase; q-PCR; Quantitative Real-
Duplicated membrane estrogen receptors in the European sea bass (Dicentrarchus labrax): Phylogeny, expression and regulation throughout the reproductive cycle
Keywords: توالی کدگذاری; 18s; 18S ribosomal RNA; 7TM; seven transmembrane domains; aa; amino acids; CDS; coding sequence; E2; 17β-estradiol; Ef1α; elongation factor 1-alpha; Esr; nuclear estrogen receptor; Fsh; follicle stimulating hormone; GPCRs; G-protein coupled receptors; G
A Functional Role for the Epigenetic Regulator ING1 in Activity-induced Gene Expression in Primary Cortical Neurons
Keywords: توالی کدگذاری; AAVs; adeno-associated viral vectors; CDS; coding sequence; ChIP; chromatin immunoprecipitation; ING1; inhibitor of growth family member 1; piRNAs; Piwi-interacting RNAs; shRNA; short-hairpin RNA; TSS; transcription start site; epigenetics; gene regulatio
Long-term evolutionary DNA methylation dynamic of protein-coding genes and its underlying mechanism
Keywords: توالی کدگذاری; CDS; coding sequence; mCG; CG methylation; mCHG; CHG methylation; mCHH; CHH methylation; MYA; million years ago; RdDM; RNA-directed DNA methylation; siRNA; small interfering RNA; TAIR; The Arabidopsis Information Resource; TE; transposable element; TF; tr
Genome-wide analysis of maize CONSTANS-LIKE gene family and expression profiling under light/dark and abscisic acid treatment
Keywords: توالی کدگذاری; COL; CONSTANS-LIKE; ABA; abscisic acid; TF; transcription factor; AA; amino acid; PI; isoelectric point; CDS; coding sequence; WGD; whole genome duplication; Mya; million years ago; NJ; neighbor joining; qRT-PCR; quantitative reverse transcription-PCR; Ks
Pyridazine-derivatives Enhance Structural and Functional Plasticity of Tripartite Synapse Via Activation of Local Translation in Astrocytic Processes
Keywords: توالی کدگذاری; Ank2; ankyrin-2; AP-2; adaptor complex 2 subunit; APP; amyloid precursor protein; AUC; area under the curve; BDNF/NT-3; brain-derived neurotrophic factor and neurotrophin-3 receptor; CDS; coding sequence; CLTB; clathrin light-chain B; EAAT1/GLAST; excitat
De-novo assembly and transcriptome analysis of Odontesthes argentinensis gill tissue, with development of single sequence repeat markers
Keywords: توالی کدگذاری; BLAST; Basic Local Alignment Search Tool; bp; base pair(s); CDS; coding sequence; cDNA; DNA complementary to RNA; GO; Gene Ontology; INDEL; insertion or deletion of bases; KEGG; Kyoto Encyclopedia of Genes and Genomes; mRNA; messenger RNA; UTR; untranslat
Identification of chickpea (Cicer arietinum) in foods using a novel real-time polymerase chain reaction detection method
Keywords: توالی کدگذاری; A; absorbance; BLAST; basic local alignment search tool; bp; base pair; BSA; bovine serum albumin; CaNCED; 9-cis-epoxycarotenoid dioxygenase in Cicer arietinum; CDS; coding sequence; Ct; threshold cycle; DNA; deoxyribonucleic acid; EDTA; ethylenediaminete
Transcriptional regulation of follicle-stimulating hormone β-subunit in marmoset by an alternate distal promoter
Keywords: توالی کدگذاری; CDS; coding sequence; EMSA; electrophoretic mobility-shift assay; FSH; follicle stimulating hormone; GnRH; gonadotropin releasing hormone; NWM; New World monkey; RT; reverse transcriptase; TBP; TATA box-binding protein; TSS; transcriptional start site; UT
Toward phylogenomics of Lauraceae: The complete chloroplast genome sequence of Litsea glutinosa (Lauraceae), an invasive tree species on Indian and Pacific Ocean islands
Keywords: توالی کدگذاری; Cp; chloroplast; LSC; large single-copy region; SSC; small single-copy region; IR; inverted repeat; bp; base pair(s); rRNA; ribosomal RNA; tRNA; transfer RNA; IGS; intergenic spacer; CDS; coding sequence; SSR; simple sequence repeat; ML; maximum likelihoo
Heterologous expression of GmSIP1;3 from soybean in tobacco showed and growth retardation and tolerance to hydrogen peroxide
Keywords: توالی کدگذاری; AQPs; aquaporins; PIPs; plasma membrane intrinsic proteins; TMH; transmembrane helices; SIPs; small intrinsic proteins; CTAB; cetyltrimethyammonium brodmide; PEG; polyethyleneglycol; NPA; Asn-Pro-Ala; CDS; coding sequence; H2O2; hydrogen peroxide; MDA; ma
Original ArticleMyocyte enhancer factor 2D promotes colorectal cancer angiogenesis downstream of hypoxia-inducible factor 1α
Keywords: توالی کدگذاری; MEF2D; HIF-1α; Angiogenesis; Colorectal cancer; CD31; cluster of differentiation 31; CDS; coding sequence; ChIP; chromatin immunoprecipitation; CM; conditioned medium; CRC; colorectal cancer; DMEM; Dulbecco's modified Eagle's medium; HCC; hepatocellular
Transcriptional profiling of Rickettsia prowazekii coding and non-coding transcripts during in vitro host-pathogen and vector-pathogen interactions
Keywords: توالی کدگذاری; AAE2; Amblyomma americanum cells; CDS; coding sequence; gltA; citrate synthase gene; HMECs; human microvascular endothelial cells; MEV; mean expression value; Rp_sR; Rickettsia prowazekii small ribonucleic acid; RPKM; reads per kilobase per million; TEX;
Src SUMOylation Inhibits Tumor Growth Via Decreasing FAK Y925 Phosphorylation
Keywords: توالی کدگذاری; SFKs; Src family kinases; SH; Src homology; SUMO; small ubiquitin-like modifier; CDS; coding sequence; IP; immunoprecipitation; GST; glutathione S-transferase; FAK; Focal adhesion kinase; SENPs; SUMO-sentrin specific proteases;
A novel role of fragile X mental retardation protein in pre-mRNA alternative splicing through RNA-binding protein 14
Keywords: توالی کدگذاری; CDS; coding sequence; co-IP; co-immunoprecipitation; FBS; fetal bovine serum; FMRP; fragile X mental retardation protein; KO; knockout; PBS; phosphate-buffered saline; PVDF; polyvinylidene difluoride; RBM14; RNA-binding protein 14; RIP; RNA immunoprecipit
Genomic organization and structural diversity of germin-like protein coding genes in foxtail millet (Setaria italica L.)
Keywords: توالی کدگذاری; bp; base pairs; CARES; cis-acting regulatory elements; CDS; coding sequence; GER; germins; GLP; germin-like proteins; GO; gene ontology; HMM; hidden Markov Model; MYA; million years ago; OXO; oxalate oxidases; pI; iso-electric point; RT-PCR; Reverse trans
Research articleUnderstanding the role of DNA polymerase λ gene in different growth and developmental stages of Oryza sativa L. indica rice cultivars
Keywords: توالی کدگذاری; Indica rice cultivars; Developmental stages; DNA polymerase λ; Gene expression; ddNTP sensitivity; In vitro DNA polymerase assay; cds; Coding sequence; ddNTP; Dideoxynucleotidetriphosphate; PMSF; Phenylmethanesulfonyl fluoride; PVDF; Polyvinylidenediflu
Ct shift: A novel and accurate real-time PCR quantification model for direct comparison of different nucleic acid sequences and its application for transposon quantifications
Keywords: توالی کدگذاری; qPCR; quantitative polymerase chain reaction; Ct; threshold cycle; ÎÎCt; comparative Ct; RT-PCR; reverse transcription PCR; PGBD3; PiggyBac derived transposon family member 3; CS; Cockayne syndrome; CSB; Cockayne syndrome B; SB; Sleeping Beauty; Rcor1;
Digital gene expression profiling of flax (Linum usitatissimum L.) stem peel identifies genes enriched in fiber-bearing phloem tissue
Keywords: توالی کدگذاری; DGE; digital gene expression; DEGs; differentially expressed genes; qRT-PCR; quantitative real-time PCR; GO; the Gene Ontology database; KEGG; The Kyoto Encyclopedia of Genes and Genomes database; ESTs; expressed sequence tags; L; leaf samples; SP; stem p
Functional genomics provides insights into the role of Propionibacterium freudenreichii ssp. shermanii JS in cheese ripening
Keywords: توالی کدگذاری; Cas; CRISPR-associated protein; CDS; coding sequence; COG; clusters of orthologous groups; CRISPR; clustered regularly interspaced short palindromic repeats; EMPP; Embden-Meyerhof-Parnas-pathway; FDR; false discovery rate; GI; genomic island; HGT; horizon
A cysteine protease (cathepsin Z) from disk abalone, Haliotis discus discus: Genomic characterization and transcriptional profiling during bacterial infections
Keywords: توالی کدگذاری; CTSZ; Cathepsin Z; Ab; Disk abalone; gDNA; Genomic DNA; BLAST; Basic Local Alignment Search Tool; BAC; Bacterial artificial chromosome; CDS; Coding sequence; CDD; Conserved domain search program; PBS; Phosphate buffered saline; CFU; Colony forming units;