Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Sensitivity analysis; Complex raw material; Filamentous fungi; Corn steep liquor; Key material attributes; ACV; L-α-aminoadipyl-L-cysteinyl-D-valine; CMA; critical material attributes; CPP; critical process parameters; CQA; criti
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Keywords: تجزیه و تحلیل شار متابولیک; BCAA; branched-chain amino acid; ETC; electron transport chain; FOCM; folate-mediated one carbon metabolism; HIFs; hypoxia-induced factors; ISA; isotopomer spectral analysis; ODE; ordinary differential equation; oxPPP; oxidative pentose phosphate pathway;
Keywords: تجزیه و تحلیل شار متابولیک; Lactic acid; Oxygen metabolism; Metabolite profiling; Metabolic flux analysis;
High-throughput quantification of the levels and labeling abundance of free amino acids by liquid chromatography tandem mass spectrometry
Keywords: تجزیه و تحلیل شار متابولیک; Amino acids; 13C-labeling; LC-MS/MS; Mass isotopomer distribution; Multiple reaction monitoring; Metabolic flux analysis;
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Cancer metabolism;
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Metabolic network; Methionine; Serine; Cancer metabolism; Optimization; Simulation studies;
Keywords: تجزیه و تحلیل شار متابولیک; MFA; metabolic flux analysis; MDV; mass distribution vector; Sf; flux solution from an unconstrained model; Sd; flux solution from a fully constrained model; Sdmin; flux solution from a model with minimal constraints; ACCOA; acetyl-CoA; PYR; pyruvate; SER
The importance of accurately correcting for the natural abundance of stable isotopes
Keywords: تجزیه و تحلیل شار متابولیک; Stable isotopes; Natural abundance correction; Metabolic flux analysis; Reproducibility;
Keywords: تجزیه و تحلیل شار متابولیک; CBM; Constraint-based modeling; CHO; Chinese hamster ovarian; ER; Endoplasmic reticulum; FBA; Flux balance analysis; GFA; Glycosylation flux analysis; IgG; Immunoglobulin G; MFA; Metabolic flux analysis; PAT; Process analytical technology; QbD; Quality by
Keywords: تجزیه و تحلیل شار متابولیک; Systems biology; Metabolic flux analysis; Elementary mode; Metabolic flux estimation; Genetic mutant database; Metabolic network data; Flux mutant prediction; Genetic modification
Keywords: تجزیه و تحلیل شار متابولیک; Inulin; Ethanol production; Oxidation-reduction potential control; Consolidated bioprocessing; Metabolic flux analysis; Kluyveromyces marxianus;
Keywords: تجزیه و تحلیل شار متابولیک; Noninvasive indices; Nonalcoholic fatty liver disease; Nonalcoholic steatohepatitis; Simple steatosis; Treatment; ABCA1; ATP-binding cassette transporter subfamily A, member A1; ALT; alanine transaminase; AST; aspartate transaminase; AMPK; 5â² adenosine
Keywords: تجزیه و تحلیل شار متابولیک; CCE; Carbon conversion efficiency; CF; Cystic Fibrosis; EDP; Entner-Doudoroff Pathway; EMPP; Embden Meyerhof Parnas Pathway; FBA; Flux balance analysis; FVA; Flux Variability Analysis; HCA; Hierarchical Clustering Analysis; MFA; Metabolic flux analysis; O
Keywords: تجزیه و تحلیل شار متابولیک; KiSAO; kinetic simulation algorithm ontology; MIASE; minimum information about a simulation experiment; MIRIAM; minimal information required in the annotation of models; NCBI; National Center for Biotechnology Information; SBO; systems biology ontology; S
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Gene expression; Metabolic networks; Cancer;
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Isotopic labeling; Acyl editing; Central metabolism; Mass spectrometry;
Keywords: تجزیه و تحلیل شار متابولیک; Mechanistic modeling; Top-down systems biology; Metabolic flux analysis; Cell objective; Flux balance analysis;
Keywords: تجزیه و تحلیل شار متابولیک; Escherichia coli; Succinate; Activated glyoxylate pathway; Acetate kinase and phosphotransacetylase (ackA-pta); Metabolic flux analysis;
Keywords: تجزیه و تحلیل شار متابولیک; Cancer; Metabolism; Networks; Regulation; Flux balance analysis; Metabolic flux analysis; Pattern analysis;
Keywords: تجزیه و تحلیل شار متابولیک; metabolic network; mathematical modelling; underdetermined systems; Metabolic Flux Analysis; Flux Balance Analysis; flux-spectrum approach; overflow metabolism; mammalian cells
Metabolic shift of Klebsiella pneumoniae L17 by electrode-based electron transfer using glycerol in a microbial fuel cell
Keywords: تجزیه و تحلیل شار متابولیک; Microbial fuel cell; mRNA expression; RT-PCR; Klebsiella pneumonia L17; Electrode based electron transfer; Metabolic shift; Metabolic flux analysis;
Analysis of 13C labeling amino acids by capillary electrophoresis - High resolution mass spectrometry in developing flaxseed
Keywords: تجزیه و تحلیل شار متابولیک; 13C labeling; Accurate assessment of labeling measurements; Amino acids; Metabolic flux analysis; Fluxomic; Flaxseed;
Elucidation of photoautotrophic carbon flux topology in Synechocystis PCC 6803 using genome-scale carbon mapping models
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Carbon mapping model; Genome-scale model; Synechocystis; Photoautotrophic metabolism;
The ATP-stimulated translocation promoter (ASTP) activity of glycerol kinase plays central role in adipogenesis
Keywords: تجزیه و تحلیل شار متابولیک; Glycerol kinase; Glycerol kinase deficiency; Metabolic flux analysis; Moonlighting proteins; Adipogenesis; ASTP; ATP stimulated translocation promoter; GK; glycerol kinase; GKD; glycerol kinase deficiency; VDAC; voltage-dependent anion channel; Gyk; murin
Study on production enhancement of validamycin A using online capacitance measurement coupled with 1H NMR spectroscopy analysis in a plant-scale bioreactor
Keywords: تجزیه و تحلیل شار متابولیک; NMR; nuclear magnetic resonance; GC; gas chromatography; MS; mass spectrometry; DCW; dry cell weight; HPLC; high-performance liquid chromatography; OUR; oxygen uptake rate; CER; carbon dioxide expiration rate; vvm; air volume/culture volume/min; HSQC; het
Lysine production from the sugar alcohol mannitol: Design of the cell factory Corynebacterium glutamicum SEA-3 through integrated analysis and engineering of metabolic pathway fluxes
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; 13C; Elementary flux mode; Fructokinase; Glyceraldehyde 3-phosphate dehydrogenase; NADPH; Lysine; Oxidative pentose phosphate pathway; Fructose; Seaweed; Macroalgae; Biomass;
13C labeling analysis of sugars by high resolution-mass spectrometry for metabolic flux analysis
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Isotopomers; 13C-labeling; Sugars; LC-HRMS; Mass spectrometry;
Data documenting the comparison between the theoretically expected values of free sugars mass isotopomer composition with standards using GC-MS and LC-HRMS for Metabolic Flux Analysis
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Isotopic enrichments of free sugars; Mass spectrometry; LC-HRMS;
Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring
Keywords: تجزیه و تحلیل شار متابولیک; Adaptive evolution; Escherichia coli; Metabolic flux analysis; Flux balance analysis; Fast growth;
Use of CellNetAnalyzer in biotechnology and metabolic engineering
Keywords: تجزیه و تحلیل شار متابولیک; CNA; CellNetAnalyzer; SCBM; Stoichiometric and constraint-based modeling; CR(s); Conservation relation(s); MFA; Metabolic flux analysis; FBA; Flux balance analysis; FVA; Flux variability analysis; EFM(s); Elementary flux modes(s); MCS(s); Minimal cut set(
Application of 13C flux analysis to identify high-productivity CHO metabolic phenotypes
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Chinese hamster ovary; IgG expression; Lactate shift; Citric acid cycle;
Production of itaconic acid by biotransformation of wheat bran hydrolysate with Aspergillus terreus CICC40205 mutant
Keywords: تجزیه و تحلیل شار متابولیک; Wheat bran; Aspergillus terreus CICC40205; Itaconic acid; Mutagenic breeding; Metabolic flux analysis;
Original research articleLKB1 promotes metabolic flexibility in response to energy stress
Keywords: تجزیه و تحلیل شار متابولیک; LKB1; Cancer metabolism; Mitochondria; Metabolic flux analysis; Phenformin; Glutaminase;
What can mathematical modelling say about CHO metabolism and protein glycosylation?
Keywords: تجزیه و تحلیل شار متابولیک; 00-01; 99-00; CHO cells; Metabolic modelling; Glycosylation; MFA; Kinetic model; 13C-labelling; CHO; Chinese hamster ovary; FBA; Flux Balance Analysis; GSMR; genome-scale metabolic reconstruction; mAb; monoclonal antibody; MFA; metabolic flux analysis; PP
Original Research ArticleUltra-deep next generation mitochondrial genome sequencing reveals widespread heteroplasmy in Chinese hamster ovary cells
Keywords: تجزیه و تحلیل شار متابولیک; CHO; Chinese hamster ovary; MFA; Metabolic flux analysis; OXPHOS; Oxidative phosphorylation; nDNA; nuclear DNA; mtDNA; mitochondrial DNA; D-loop; displacement loop; ROS; reactive oxygen species; MAF; minor allele frequency; NumtS; nuclear encoded mitochon
Poly-pathway model, a novel approach to simulate multiple metabolic states by reaction network-based model - Application to amino acid depletion in CHO cell culture
Keywords: تجزیه و تحلیل شار متابولیک; Modeling; Metabolic flux analysis; Elementary flux modes; Chinese hamster ovary cells; Amino acid metabolism; Poly-pathway model;
From MFA to FBA: Defining linear constraints accounting for overflow metabolism in a macroscopic FBA-based dynamical model of cell cultures in bioreactor
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic network; Mathematical modelling; Underdetermined systems; Metabolic Flux Analysis; Flux Balance Analysis; Flux Variability Analysis; Overflow metabolism; Macroscopic models; Dynamical models; Cell cultures;
Metabolic flux network analysis of hydrogen production from crude glycerol by Clostridium pasteurianum
Keywords: تجزیه و تحلیل شار متابولیک; Biohydrogen; Metabolic flux analysis; Glycerol; Fermentation; Butyrate to acetate ratio;
13C metabolic flux analysis of three divergent extremely thermophilic bacteria: Geobacillus sp. LC300, Thermus thermophilus HB8, and Rhodothermus marinus DSM 4252
Keywords: تجزیه و تحلیل شار متابولیک; Parallel labeling experiments; Metabolic model validation; Thermophiles; Metabolic flux analysis;
Metabolic fluxes in recombinant Streptomyces lividans analyzed with 13C-based metabolic flux analysis
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Streptomyces lividans; recombinant protein;
Carbon material distribution and flux analysis under varying glucose concentrations in hydrogen-producing Clostridium tyrobutyricum JM1
Keywords: تجزیه و تحلیل شار متابولیک; Clostridium tyrobutyricum; Metabolic flux analysis; Carbon balance; Energy balance; Hydrogen;
Yarrowia lipolytica as a biotechnological chassis to produce usual and unusual fatty acids
Keywords: تجزیه و تحلیل شار متابولیک; GEMs; Genome scale metabolic models; MFA; metabolic flux analysis; TAG; triacylglycerol; DAG; diacylglycerol; CLA; conjutated linoleic acid; EPA; eicosapentanoic acid; DHA; docosahexanoic acid; LA; linoleic acid; ALA; alpha-linoleic acid; RA; ricinoleic a
A methodology for building a macroscopic FBA-based dynamical simulator of cell cultures through flux variability analysis
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Flux balance analysis; Mathematical modeling; Flux variability analysis; Mammalian cells; Constraint-based modeling
Analysis of culture media screening data by projection to latent pathways: The case of Pichia pastoris X-33
Keywords: تجزیه و تحلیل شار متابولیک; EFM; elementary flux mode; LV; latent variable; MFA; metabolic flux analysis; PLP; projection to latent pathways; PLS; partial least squares; RMSE; root mean squared error; Pichia pastoris X-33; Culture media design; Elementary flux modes; Projection to l
Can stable isotope mass spectrometry replace âradiolabelled approaches in metabolic studies?
Keywords: تجزیه و تحلیل شار متابولیک; Flux profiling; Isotopic labelling; Metabolic flux analysis; Plant systems biology; Primary metabolism;
Development of cultivation strategies for friulimicin production in Actinoplanes friuliensis
Keywords: تجزیه و تحلیل شار متابولیک; Lipopeptide antibiotic; Chemically defined medium; Fed-batch cultivation; Continuous cultivation; Metabolic flux analysis
Disruption of lactate dehydrogenase and alcohol dehydrogenase for increased hydrogen production and its effect on metabolic flux in Enterobacter aerogenes
Keywords: تجزیه و تحلیل شار متابولیک; Enterobacter aerogenes; Lactate dehydrogenase; Alcohol dehydrogenase; Metabolic flux analysis; Conjugation;
Engineering Propionibacterium freudenreichii subsp. shermanii for enhanced propionic acid fermentation: Effects of overexpressing propionyl-CoA:Succinate CoA transferase
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic engineering; Propionic acid fermentation; Propionyl-CoA:succinate CoA transferase; Metabolic flux analysis; Propionibacterium shermanii;
Dynamic metabolic flux analysis using B-splines to study the effects of temperature shift on CHO cell metabolism
Keywords: تجزیه و تحلیل شار متابولیک; B-DMFA; B-spline fitting dynamic metabolic flux analysis; CHO; Chinese hamster ovary; DMFA; dynamic metabolic flux analysis; L-DMFA; linear dynamic metabolic flux analysis; MFA; metabolic flux analysis; SSR; variance-weighted sum of squared residuals; Dyn
13C-metabolic flux analysis of co-cultures: A novel approach
Keywords: تجزیه و تحلیل شار متابولیک; Metabolic flux analysis; Isotopic tracers; Microbial consortia; Multi-organism systems; Microbial communities;