Keywords: Tubulin polymerization promoting proteins (TPPPs); Zebrafish; Lamprey; Genome duplication; Synteny; TPPP; tubulin polymerization promoting protein;
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Keywords: RNA-seq; Synteny; Recombinant leptin; STAT3;
Keywords: Catfish; Hemoglobin; Synteny; Heat stress; Expression;
Keywords: Calcitonin; Evolution; G protein coupled receptors; Promoter analysis; Synteny
Keywords: Angiotensinogen; Serpin A8; Group V2; Synteny; Phylogenetic analysis; AGT variants;
Keywords: Capillaries; eNOS; Fish; Histochemistry; Muscle; Myography; Synteny;
lncRNA in worms - Time to meet the neighbors
Keywords: Bioinformatics; Evolution; Transcription regulation; Synteny;
Phylogeny and expression patterns of two apolipoprotein E genes in the flatfish Senegalese sole
Keywords: ai; anterior intestine; b; brain; ABCA1; ATP Binding Cassette Subfamily A Member 1; BCIP; bromo-chloro-indolyl-phosphate; CNS; central nervous system; DMSO; dimehtylsulfoxide; dph; days post-hatch; e; eye; HDL; high-density lipoproteins; hb; hindbrain; h;
Expression of the adhesion G protein-coupled receptor A2 (adgra2) during Xenopus laevis development
Keywords: Adgra2; Gpr124; TEM5; Expression; Synteny; Xenopus laevis; a; animal; A; anterior; Adgr; adhesion G protein coupled receptor; Adgra2; adhesion G protein-coupled receptor A2; BA; branchial arches; BC; blastocoel; BL; blastopore lip; BP; blastopore; CG; cem
Microsatellite markers of finger millet (Eleusine coracana (L.) Gaertn) and foxtail millet (Setaria italica (L.) Beauv) provide resources for cross-genome transferability and genetic diversity analyses in other millets
Keywords: Millets; Microsatellite markers; Synteny; Cross-genome transferability; Polymorphic information content; Genetic diversity;
Genome-wide identification and tissue-specific expression analysis of nucleotide binding site-leucine rich repeat gene family in Cicer arietinum (kabuli chickpea)
Keywords: Cicer arietinum; NBS-LRR; Gene annotation; Synteny; DNA-motifs; Gene expression;
Genetic diversity of disease resistance genes in foxtail millet (Setaria italica L.)
Keywords: Foxtail millet; Gene duplication; NBS-LRR; Pathogen resistance; Purifying selection; Synteny;
Data ArticleData on the genome-wide identification of CNL R-genes in Setaria italica (L.) P. Beauv.
Keywords: Foxtail millet; Gene duplication; NBS-LRR; Pathogen resistance; Purifying selection; Synteny;
Pan-genome analysis of Clostridium botulinum reveals unique targets for drug development
Keywords: C. botulinum; Clostridium botulinum; COG; Clusters of Orthologous Groups of Proteins; WHO; World Health Organization; HSP; high scoring proteins; SWG; Smith-Waterman-Gotoh; BPGA; Bacterial pan Genome Analysis; MLST; multi locus sequence typing; PSI-BL
Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
Keywords: Synteny; Intergenic spacers; Species delimitation; Species discovery; Species validation; Lichen-forming fungi;
Evolution of TWIN SISTER of FT (TSF) Genes in Brassicaceae
Keywords: Brassicaceae; FT; TSF; evolution; CNS; synteny
Conserved structure and expression of hsp70 paralogs in teleost fishes
Keywords: Fish; Gene duplication; Heat shock proteins; HSP70; Intron; Paralog; Synteny; Tandem duplication
Molecular characterization and developmental expression patterns of apolipoprotein A-I in Senegalese sole (Solea senegalensis Kaup)
Keywords: Apolipoprotein A-I; Gene expression; Synteny; Senegalese sole; Brain; HDL;
The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete
Keywords: Filamentous; Fungus; Mitochondrial genome; Smallest; Synteny; Zasmidium cellare
Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta
Keywords: Lepidoptera; Insect; Tobacco hornworm; Synteny; Moth; Insect biochemistry; Innate immunity
Molecular characterization, origin, and evolution of teleost p68 gene family: Insights from Japanese flounder, Paralichthys olivaceus
Keywords: p68; Genome duplication; Synteny; Selective pressure; Sub-functionalization;
Neuropeptide Y family receptors Y1 and Y2 from sea lamprey, Petromyzon marinus
Keywords: Lamprey; Neuropeptide Y; Receptor; Evolution; Phylogeny; Synteny;
The mitochondrial genomes of Pecten albicans and Pecten maximus (Bivalvia: Pectinidae) reveal a novel gene arrangement with low genetic differentiation
Keywords: Mitochondrial genome; Pectinidae; Synteny; Phylogenetics; Amino acids; Scallops
Characterization of rock bream (Oplegnathus fasciatus) complement components C1r and C1s in terms of molecular aspects, genomic modulation, and immune responsive transcriptional profiles following bacterial and viral pathogen exposure
Keywords: Synteny; Classical complement system; Immune responses
New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing
Keywords: Bd; Brachypodium distachyon; CDS; coding DNA sequences; dN/dS; non-synonymous-to-synonymous substitutions; EST; expressed sequence tag; ISBP; insertion site-based polymorphism; IWGSC; International Wheat Genome Sequencing Consortium; LMP; long mate pair;
Paleogenomics in Triticeae for translational research
Keywords: Triticeae; Synteny; Duplication; Evolution; Genome; Ancestor;
Second generation genetic linkage map for the gilthead sea bream Sparus aurata L.
Keywords: Sparus aurata; Microsatellites; EST-SSR; SNP; Synteny; Comparative map;
Utility of syntenic relationships of VDAC1 pseudogenes for not only an understanding of the phylogenetic divergence history of rodents, but also ascertaining possible pseudogene candidates as genuine pseudogenes
Keywords: VDAC, voltage-dependent anion channelVoltage-dependent anion channel (VDAC); Mitochondria; Pseudogene; Synteny
Gene and genome duplications and the origin of C4 photosynthesis: Birth of a trait in the Cleomaceae
Keywords: Plant genome evolution; Synteny; Cleomaceae; Brassicaceae; Bioinformatics; Whole genome duplication; Paleopolyploidy; C4 photosynthesis
Molecular phylogeny of C1 inhibitor depicts two immunoglobulin-like domains fusion in fishes and ray-finned fishes specific intron insertion after separation from zebrafish
Keywords: C1 inhibitor; Serpin G1; Group V4; Synteny; Phylogenetic analysis; Intron gain;
Surveying genetic variants and molecular phylogeny of cerebral cavernous malformation gene, CCM3/PDCD10
Keywords: Cerebral cavernous malformations; Endothelium; CCM3/PDCD10; Synteny; Phylogenetic analysis; Genetic variants
Genetic variants and evolutionary analyses of heparin cofactor II
Keywords: Heparin cofactor II; SerpinD1; Group V2; Synteny; Phylogenetic analysis; HCII variants; Nested gene; PIK4CA
Sequence, phylogenetic and variant analyses of antithrombin III
Keywords: Antithrombin III; SerpinC1; Group V5; Synteny; Phylogenetic analysis; ATIII variants;
Genome-wide identification and analysis of the SBP-box family genes in apple (Malus Ã domestica Borkh.)
Keywords: Apple; SBP-box gene; MdmiR156; Phylogeny; Synteny; Gene expression; Hormone response; aa; amino acid(s); ABA; abscisic acid; Eth; ethylene; GA; gibberellin; MeJA; methyl jasmonate; miRNA; microRNA; NLS; nuclear localization signal; SA; salicylic acid; SBP
Ancient cis-regulatory constraints and the evolution of genome architecture
Keywords: synteny; genome evolution; cis-regulatory element
Characterization and expression analysis of Th-POK from the Japanese pufferfish, Takifugu rubripes
Keywords: Th-POK; T-helper-inducing POZ/Krüppel-like factor; LPS; lipopolysaccharide; polyI:C; polyinosinic-polycytidylic acid; RT; reverse transcription; PCR; polymerase chain reaction; qPCR; quantitative real-time PCR; Takifugu rubripes; Th-POK; Structural ana
Sex dimorphic expression of five dmrt genes identified in the Atlantic cod genome. The fish-specific dmrt2b diverged from dmrt2a before the fish whole-genome duplication
Keywords: Dmrt, Doublesex and Mab-3 related transcription factor; dpf, days post fertilisation; dph, days post hatch; GSI, gonado-somatic index; qPCR, quantitative polymerase chain reaction, (qPCR)Sex determination; Synteny; Paralogon; Genome duplication; Gene loss
Characterization of genomic sequence showing strong association with polyembryony among diverse Citrus species and cultivars, and its synteny with Vitis and Populus
Keywords: Citrus; Apomixis; Polyembryony; Synteny; Haplotype
Differential regulation of the luteinizing hormone genes in teleosts and tetrapods due to their distinct genomic environments – Insights into gonadotropin beta subunit evolution
Keywords: FSH, follicle-stimulating hormone; LH, luteinizing hormone; GTH, gonadotropin hormone; TSH, thyrotropin hormone; CGα, common alpha subunit of glycoproteinLHβ; FSHβ; Reproduction; Synteny; In situ hybridization
Palaeogenomics in cereals: Modeling of ancestors for modern species improvement
Keywords: Synteny; Duplication; Genome; Chromosome; Evolution; Speciation; MarkersSynténie; Duplication; Génome; Chromosome; Évolution; Spéciation; Marqueurs
MBL1 gene in nonhuman primates
Keywords: MBL1; Evolution; Nonhuman primates; Pseudogene; Sequencing; Synteny
Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage
Keywords: Gossypium; Lineage specific genome-wide duplication; Vitis vinifera; Whole genome alignment; Synteny; Collinearity; Gene loss; Gene density
The HMGB protein gene family in zebrafish: Evolution and embryonic expression patterns
Keywords: High-Mobility group; High-Mobility Group Box; Gene family; Phylogenetic analysis; Molecular evolution; Gene expression; Development; Embryonic development; Vertebrates; Fish; Danio rerio; In situ hybridization; Synteny; Chromatin; Transcription; Recombina
Genomics of fish IL-17 ligand and receptors: A review
Keywords: IL-17; IL-17 receptor; Fish; Synteny; Phylogeny
Comparative study on synteny between yeasts and vertebrates
Keywords: Yeast; Vertebrate; Synteny; Genome; Evolution; Chromosome; RearrangementsLevures; Vertébrés; Synténie; Génome; Evolution; Chromosome; Réarrangements
Cytochrome P450 CYP2 genes in the common cormorant: Evolutionary relationships with 130 diapsid CYP2 clan sequences and chemical effects on their expression
Keywords: Anole lizard; Chicken; Common (great) cormorant; CYP2; Cytochrome P450; Phylogeny; Synteny; Zebra finch
The gsdf gene locus harbors evolutionary conserved and clustered genes preferentially expressed in fish previtellogenic oocytes
Keywords: Ovary; Testis; Medaka; Teleost; Synteny
Genome-Wide Comparative in silico Analysis of Calcium Transporters of Rice and Sorghum
Keywords: in silico comparison; calcium transporter; rice; sorghum; genomic annotation; synteny
A Babesia bovis gene syntenic to Theileria parva p67 is expressed in blood and tick stage parasites
Keywords: Babesia bovis; Theileria parva; p67; Synteny; Comparative genomics
A radiation hybrid map of the European sea bass (Dicentrarchus labrax) based on 1581 markers: Synteny analysis with model fish genomes
Keywords: Sea bass; RH-panel; Mapping; Synteny; Comparative genomics