Keywords: میلیون سال پیش; ESS; effective sample size; Ma; million years ago; PSRF; potential scale reduction factor; SBW; spruce budworm; smy; substitution per site per million years; UFBS; Ultra-Fast Bootstrap support; Mitogenome; Phylogenetic divergence; Time estimation; Pliocen
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Keywords: میلیون سال پیش; Seismic geomorphology; Clinoforms; Carbonate ramp; Trajectory analysis; Cenozoic; North West Shelf Australia; NWS; North West Shelf; SS; Seismic sequence; SB; Sequence boundary; DL; Dip line; IDA; Individual dip line aggradation; IDP; Individual dip line
Keywords: میلیون سال پیش; mRNAs; messenger RNAs; RNA-seq; RNA Illumina sequencing; COX1; cytochrome c oxidase subunit 1; COX3; cytochrome c oxidase subunit 3; HSP; heat shock protein; gGAPDH; Glyceraldehyde-3-phosphate dehydrogenase; MYA; million years ago; Transcriptomics; Co-div
Keywords: میلیون سال پیش; tRNAs; transfer RNAs; cpDNA; chloroplast DNA; MYA; million years ago; Cp; chloroplast; Indel; insertion and deletion; PCR; polymerase chain reaction; IR; inverted repeat; SSC region; small single-copy region; LSC region; large single-copy region; ML; maxi
Keywords: میلیون سال پیش; bpp; Bayesian Posterior Probabilities; BP&P; Bayesian Phylogenetics and Phylogeography program; ML; Maximum Likelihood; ILS; Incomplete Lineage Sorting; TNHCFS; Texas Natural History Collections Field Series; MSC; MultiSpecies Coalescent; SNP; Single Nucl
Keywords: میلیون سال پیش; ASTRAL; Accurate Species TRee ALgorithm; bp; basepairs; c-gene; coalescence gene; CI; consistency index; CUs; coalescent units; GTR; general time reversible; ILS; incomplete lineage sorting; ML; maximum likelihood; MP-EST; maximum pseudo-likelihood for es
Keywords: میلیون سال پیش; AA; amino acid; ND; normalized difference; Mya; million years ago; dS/dN; number of synonymous substitutions per synonymous site to the number of non-synonymous substitutions per non-synonymous site; CDS; coding sequence; Amino acid gain/loss; Amino acid
Keywords: میلیون سال پیش; CARC; conceptualization of asymmetric relations between concepts; CCLI; cultural constraints on linguistic interpretation; mya; million years ago; N; noun; P-H; 'pyow-hack'; V; verb; Language; Evolution; Syntax; Concatenation; Embedding; Sign; Num
Keywords: میلیون سال پیش; Symbol; Evolution; Sign; Language; Meaning; Syntax; mya; million years ago; NL; natural language; S; stimulus; R; reaction;
Keywords: میلیون سال پیش; AOA; alternative oxidase antibody; AOX; alternative oxidase; Arg; argenine; ATP; adenosine triphosphate; BLAST; basic local alignment search tool; Bya; billion years ago; CDS; coding sequence; COX; cytochrome c oxidase; Cys; cysteine; ETC; electron transp
Salt and drought stress and ABA responses related to bZIP genes from V. radiata and V. angularis
Keywords: میلیون سال پیش; bZIP; basic leucine zipper; TFs; transcription factors; HMM; hidden Markov model; MW; molecular weight; pI; isoelectric point; Ka; non-synonymous substitutions rates; Ks; synonymous substitutions rates; PEG; polyethylene glycol; ABA; abscisic acid; mya; m
New insights into the phylogeny of the TMBIM superfamily across the tree of life: Comparative genomics and synteny networks reveal independent evolution of the BI and LFG families in plants
Keywords: میلیون سال پیش; Bax inhibitor 1; Gene family evolution; Lifeguard; Programmed cell death; Synteny network; TMBIM; ER; endoplasmic reticulum; FtsH; filamentous temperature-sensitive; GA; Golgi apparatus; GAAP; Golgi anti-apoptotic protein; GHITM; growth-hormone inducible
Identification of another primordial CD80/86 molecule in rainbow trout: Insights into the origin and evolution of CD80 and CD86 in vertebrates
Keywords: میلیون سال پیش; CD80/86; Duplication; Evolution; Rainbow trout; APC; antigen presenting cell; DN; double negative; EF-1a; elongation factor 1a; HKL; head kidney leukocyte; mAb; monoclonal antibody; Mya; million years ago; Mye; myeloid; ORF; open reading frame; qPCR; quan
Long-term evolutionary DNA methylation dynamic of protein-coding genes and its underlying mechanism
Keywords: میلیون سال پیش; CDS; coding sequence; mCG; CG methylation; mCHG; CHG methylation; mCHH; CHH methylation; MYA; million years ago; RdDM; RNA-directed DNA methylation; siRNA; small interfering RNA; TAIR; The Arabidopsis Information Resource; TE; transposable element; TF; tr
Genome-wide analysis of maize CONSTANS-LIKE gene family and expression profiling under light/dark and abscisic acid treatment
Keywords: میلیون سال پیش; COL; CONSTANS-LIKE; ABA; abscisic acid; TF; transcription factor; AA; amino acid; PI; isoelectric point; CDS; coding sequence; WGD; whole genome duplication; Mya; million years ago; NJ; neighbor joining; qRT-PCR; quantitative reverse transcription-PCR; Ks
Functional importance for developmental regulation of sterol biosynthesis in Acanthamoeba castellanii
Keywords: میلیون سال پیش; Ac; Acanthamoeba castellanii; SMT; sterol methyl transferase; GC-MS; gas-chromatography-mass spectroscopy; VOR; voriconazole; AZC; 25-azacycloartanol; RRTc; retention time of unknown to retention time of cholesterol in GC; Mya; million years ago; Acan
Ancient mitochondrial pseudogenes reveal hybridization between distant lineages in the evolution of the Rupicapra genus
Keywords: میلیون سال پیش; A; adenosine; AIC; Akaike information criterion; bp; base pair; BPP; Bayesian posterior probability; COI; cytochrome oxidase I; cytb; cytochrome b; dCTP; deoxycytidine triphosphate; dNTP; deoxyribonucleoside triphosphate; G; guanosine; HKY; Hasegawa-Kishi
The complete mtDNA sequence of the griffon vulture (Gyps fulvus): Phylogenetic analysis and haplotype frequency variations after restocking in the Sardinian population
Keywords: میلیون سال پیش; Griffon vulture; Mitochondrial haplotypes; Phylogeny; Conservation management; Hpt; haplotype; MYA; million years ago; bp; base pairs; mtDNA; mitochondrial DNA; Cyt B; Cytochrome b gene; ND2; NADH dehydrogenase subunit 2 gene;
Identification and characterization of mobile genetic elements LINEs from Brassica genome
Keywords: میلیون سال پیش; aa; amino acids; BAC; bacterial artificial chromosomes; Bo; Brassica oleracea; Bp; base pair; Br; Brassica rapa; CDD; conserved domain database; CTAB; cetyltrimethylammonim bromide; Cv; cultivar; DIRs; Dictyostelium intermediate repeat sequence; DNA; Deox
Genomic organization and structural diversity of germin-like protein coding genes in foxtail millet (Setaria italica L.)
Keywords: میلیون سال پیش; bp; base pairs; CARES; cis-acting regulatory elements; CDS; coding sequence; GER; germins; GLP; germin-like proteins; GO; gene ontology; HMM; hidden Markov Model; MYA; million years ago; OXO; oxalate oxidases; pI; iso-electric point; RT-PCR; Reverse trans
Skin fragility in the wild-derived, inbred mouse strain Mus pahari/EiJ
Keywords: میلیون سال پیش; M.; Mus; M.m.; Mus mus; spp; species; MYA; million years ago; Xpr1; xenotropic and polytropic retrovirus receptor 1; XMRV; Xenotropic murine leukemia virus-related virus; Lamc2; laminin, gamma 2; jeb; junctional epidermolysis bullosa; H&E; hematoxylin and
Phylogenetic position of the white-cheeked macaque (Macaca leucogenys), a newly described primate from southeastern Tibet
Keywords: میلیون سال پیش; BI; Bayesian inference; cyt b; cytochrome b; MCMC; Markov chain Monte Carlo; ML; maximum likelihood; Mya; million years ago; mtDNA; mitochondrial DNA; PCRs; polymerase chain reactions; TMRCA; the most recent common ancestor; TSPY; the paternally inherited
Evolution, expression analysis, and functional verification of Catharanthus roseus RLK1-like kinase (CrRLK1L) family proteins in pear (Pyrus bretchneideri)
Keywords: میلیون سال پیش; CrRLK1L; Catharanthus roseus RLK1-like kinases; RLKs; receptor-like kinases; PERKs; proline-rich extensin-like receptor-kinases; CRKs; cysteine-rich; LRR-RLKs; leucine-rich repeat RLKs; HERK1; HERCULES Receptor Kinase 1; RALFs; rapid alkalinization factor
Genome-wide characterization and expression analysis of the aldehyde dehydrogenase (ALDH) gene superfamily under abiotic stresses in cotton
Keywords: میلیون سال پیش; ALDHs; aldehyde dehydrogenases; ROS; reactive oxygen species; GB; glycine betaine; BADH; betaine-aldyhyde dehydrogenase; MDA; malondialdehyde; AGNC; ALDH gene nomenclature committee; GSDS; Gene Structure Display Server; Ks; synonymous; Ka; non-synonymous;
Microsynteny and phylogenetic analysis of tandemly organised miRNA families across five members of Brassicaceae reveals complex retention and loss history
Keywords: میلیون سال پیش; my; million years; mya; million years ago; RISC; RNA induced silencing complex; miRNA; Tandem organisation; Evolution; Brassicaceae;
Intraperitoneal injection urocortin-3 reduces the food intake of Siberian sturgeon (Acipenser baerii)
Keywords: میلیون سال پیش; AgRP; agoutirelated peptide; Ala; alanine; BW; body weight; bp; base pairs; CCK; cholecystokinin; CART; cocaine and amphetamine regulated transcript; CRF; corticotropin releasing factor; HPLC; high performance liquid chromatography; i.p.; intraperitoneal;
Transposition burst of mariner-like elements in the sequenced genome of Rhodnius prolixus
Keywords: میلیون سال پیش; Transposable elements; Mariner family; Burst of transposition; Speciation; Rhodnius prolixus; BSP; Bayesian Skyline Plot; ESS; Effective Sample Size; HPD; Highest Probability Density; MITE; Miniature Inverted Repeat Transposable Elements; MLE; mariner-lik
Analysis of the complete mitochondrial genome and characterization of diverse NUMTs of Macaca leonina
Keywords: میلیون سال پیش; mtDNA; mitochondrial DNA; NUMT; nuclear mitochondrial sequences; tRNA; transfer ribonucleic acid; rRNA; ribosomal ribonucleic acid; mya; million years ago; DSB; double-strand break; SAP; shrimp alkaline phosphatase; HIV-1; human immunodeficiency virus typ
A genome survey sequencing of the Java mouse deer (Tragulus javanicus) adds new aspects to the evolution of lineage specific retrotransposons in Ruminantia (Cetartiodactyla)
Keywords: میلیون سال پیش; A (nucleotide); adenosine; Ala; alanine; ALPINE; alpaca SINE; BDDF; bovine dimer driven family; BLAT; blast like alignment tool; BLAST; basic local alignment search tool; BovB; bovine RTE element; BWA; Burrows-Wheeler aligner; C (nucleotide); Cytosine;
Lineage-specific loss of FGF17 within the avian orders Galliformes and Passeriformes
Keywords: میلیون سال پیش; BMP; bone morphogenetic protein; Bpp; Bayesian posterior probabilities; cDNA; DNA complementary to RNA; CDS; coding sequence; FGF; fibroblast growth factor; FGFR; fibroblast growth factor receptor; indels; insertions/deletion; LRT; likelihood ratio test;
Research paperSystematic analysis of maize class III peroxidase gene family reveals a conserved subfamily involved in abiotic stress response
Keywords: میلیون سال پیش; PRXs; class III peroxidases; ROS; reactive oxygen species; H2O2; hydrogen peroxide; Mya; million years ago; CDS; coding sequences; HMM; Hidden Markov Model; NJ; Neighbor-Joining; Os; Oryza sativa; Zm; Zea mays; Sb; Sorghum bicolor; Maize; Class III peroxi
Phylogenetic position of Myriapoda revealed by 454 transcriptome sequencing
Keywords: میلیون سال پیش; BS; bootstrap support; CIR; Cox-Ingersoll-Ross model; EST; Expressed Sequence Tag; ML; Maximum Likelihood; mya; million years ago; PP; Bayesian posterior probability; Arthropoda; Bayesian analyses; Mandibulata; Maximum Likelihood; Myriapoda; Myriochel
Continuity or discontinuity in the European Early Pleistocene human settlement: the Atapuerca evidence
Keywords: میلیون سال پیش; Early Pleistocene; Europe; Atapuerca; TD; Gran Dolina; TE; Sima del Elefante; MRCA; Most recent common ancestor; Ma; Million years ago; TE-LRU; Sima del Elefante Lower Red Unit; MIS; Marine Isotope Stage; EMPT; Early-Middle Pleistocene Transition; CADE; C
Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos
Keywords: میلیون سال پیش; MT-RNR1; mitochondrially encoded 12S RNA; MT-ND1; mitochondrially encoded NADH dehydrogenase 1; BRCA1; breast cancer 1 early onset; VWF; von Willebrand factor; Mya; million years ago; Myr; million years; bp; base pairs; ML; Maximum likelihood; MCMCMC; Met
The conserved Cockayne syndrome B-piggyBac fusion protein (CSB-PGBD3) affects DNA repair and induces both interferon-like and innate antiviral responses in CSB-null cells
Keywords: میلیون سال پیش; CSB; Cockayne syndrome group B protein; fusion protein; short for CSB-PGBD3 fusion protein and used interchangeably; HCR; host cell reactivation; IFN; interferon; IGFBP5 and IGFBP7; insulin growth factor binding proteins 5 and 7; My; million years; Mya; m
Characterization of the immunoglobulin repertoire of the spiny dogfish (Squalus acanthias)
Keywords: میلیون سال پیش; aa; amino acid; C; Ig constant region; H; heavy chain; Ig; immunoglobulin; L; light chain; mAb; monoclonal antibody; MYA; million years ago; Sec; secretory tail; Tm; transmembrane region; V; Ig variable region; Evolution; Cartilaginous fish; Adaptive immu
Characterization of new medium-chain alcohol dehydrogenases adds resolution to duplications of the class I/III and the sub-class I genes
Keywords: میلیون سال پیش; MDR/SDR; medium-chain/short-chain dehydrogenases/reductases; ADH; alcohol dehydrogenase; MYA; million years ago; Gene duplications; Vertebrate enzyme evolution; Alcohol dehydrogenase; Liver enzyme origin; Avian order taxonomy;
Dating the arthropod tree based on large-scale transcriptome data
Keywords: میلیون سال پیش; mya; million years ago; myr; million years; LOG; log-normal autocorrelated clock model; CIR; Cox-Ingersoll-Ross model; UGM; uncorrelated gamma multipliers; Arthropoda; Bayesian methods; Cambrian explosion; CIR process; Molecular clock;
The mitochondrial genome of Bacillus stick insects (Phasmatodea) and the phylogeny of orthopteroid insects
Keywords: میلیون سال پیش; mtDNA; Phasmatodea; Bacillus; Phylogeny; Phylogenetic informativeness; AIC; Akaike Information Criterion; BF; Bayes Factor; EML; Estimated Marginal Likelihood; ML; Maximum Likelihood; mtDNA; mitochondrial DNA; Mya; million years ago; Myr; million years; P
The impact of fossil calibrations, codon positions and relaxed clocks on the divergence time estimates of the native Australian rodents (Conilurini)
Keywords: میلیون سال پیش; Myr; million years; Ma; million years ago; mt; mitochondrial; kb; kilobase; nt; nucleotide; ca; amino acid; ML; maximum likelihood; GTR; general time reversible; MTD; Multidivtime; S. D.; standard deviation; cdp; codon position; Rodentia; Leggadina; Pseud
An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group
Keywords: میلیون سال پیش; LTR; Long terminal repeats; Mya; million years ago; bp; base pair; kb; kilobase pairs; nt; nucleotide; ORF; open reading frame; TE; transposable element; Phylogeny; Xc inversion; Drosophila Americana; Deletion;
Newly discovered young CORE-SINEs in marsupial genomes
Keywords: میلیون سال پیش; SINE; short interspersed repetitive element; LINE; long interspersed repetitive element; PCR; polymerase chain reaction; mya; million years ago; CORE-SINE; Marsupials; Phylogeny; Evolution;
The SNMP/CD36 gene family in Diptera, Hymenoptera and Coleoptera: Drosophila melanogaster, D. pseudoobscura, Anopheles gambiae, Aedes aegypti, Apis mellifera, and Tribolium castaneum
Keywords: میلیون سال پیش; Olfaction; Chemoreception; Evolution; Insect; Pheromone; CD36; cluster determinant 36; Crq; croquemort; Emp; epithelial membrane protein; NinaD; neither inactivation nor afterpotential D; Pes; Peste; SCRB; scavenger receptor type B; SNMP; sensory neuron m
MyrSINEs: A novel SINE family in the anteater genomes
Keywords: میلیون سال پیش; Mya; million years ago; SINEs; short interspersed repetitive elements; t-SINEs; Retroposons; Myrmecophagidae; Xenarthra; Mammalia;
Status of genes encoding the mitochondrial S1 ribosomal protein in closely-related legumes
Keywords: میلیون سال پیش; CTAB; cetyl trimethylammonium bromide; C-terminal; carboxy-terminal; EST; expressed sequence tag; Mya; million years ago; N-terminal; amino-terminal; RACE; rapid amplification of cDNA ends; rps1; S1 ribosomal protein; RT-PCR; reverse transcriptase-polymer
Comparative genome analyses of nervous system-specific genes
Keywords: میلیون سال پیش; NS; nervous system; H-invitational; human full-length cDNA annotation invitational; CA; common ancestor; Ma; million years ago; ER; emergence rate; Homo sapiens; Tissue-specific genes; Genome; Evolution;
Uncovering the complex metabolic network underlying diterpenoid phytoalexin biosynthesis in rice and other cereal crop plants
Keywords: میلیون سال پیش; CPP; copalyl diphosphate; CPS; copalyl diphosphate synthase; CPSL; copalyl diphosphate synthase-like; P450; cytochrome P450; GGPP; geranylgeranyl diphosphate; KO; kaurene oxidase; KOL; kaurene oxidase-like; KS; kaurene synthase; KSL; kaurene synthase-like
Mitochondrial genome of Pogona vitticepes (Reptilia; Agamidae): control region duplication and the origin of Australasian agamids
Keywords: میلیون سال پیش; 12S; 12S rRNA; 16S; 16S rRNA; AT6 and AT8; ATPase subunits 6 and 8; COI-III; cytochrome oxidase subunits I-III; CR; control region; CSB; conserved sequence block; cytb; cytochrome b; LA-PCR; long-and-accurate polymerase chain reaction; ML; maximum-lik
The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths
Keywords: میلیون سال پیش; ATPase 6 and 8; ATPase subunits 6 and 8; bp; base pair(s); COI-III; cytochrome c oxidase subunits I-III; cyt b; cytochrome b; DMSO; dimethyl sulfoxide; Mya; million years ago; Myr; million years; ND1-6, 4L; NADH dehydrogenase subunits 1-6, 4L; PCR
Molecular evolution of growth hormone gene family in old world monkeys and hominoids
Keywords: میلیون سال پیش; GH; growth hormone; CSH; chronic somatommamotropin hormone; NWM; new world monkey; OWM; old world monkey; Mya; million years ago; Growth hormone; Primates; Gene duplication; Positive selection;