دانلود مقالات ISI درباره Rmsd + ترجمه فارسی

Multiscale simulation of microbe structure and dynamics

Keywords: Microbial systems; Multiscale modeling; Deductive multiscale analysis; Order parameters; Langevin dynamics; AFM; atomic force microscopy; CCMV; cowpea chlorotic mosaic virus; STMV; satellite tobacco mosaic virus; HPV; human papillomavirus; RMSD; root mean

دانلود رایگان متن کامل مقاله ISI 18 صفحه سال انتشار : 2011 سفارش ترجمه

Crystal structure of the transcriptional activator HlyU from Vibrio vulnificus CMCP6

Keywords: Crystal structure; HlyU; rtxA; Vibrio vulnificus; HlyU_Vv; HlyU from V. vulnificus CMCP6; rmsd; root-mean-square deviation; SAD; single-wavelength anomalous scattering; Se-Met; seleno-l-methionine; wHTH; winged helix-turn-helix;

دانلود رایگان متن کامل مقاله ISI 6 صفحه سال انتشار : 2010 سفارش ترجمه

Chaperone-like activity of α-cyclodextrin via hydrophobic nanocavity to protect native structure of ADH

Keywords: MD; molecular dynamic; BD; blind docking; CyD; cyclodextrin; Phe; phenylalanine; RMSD; root mean square deviations; ADH; alcohol dehydrogenase; DLS; dynamic light scattering; I; aggregation prone state intermediate; α-Cyclodextrin; Hydrophobic nanocavity

دانلود رایگان متن کامل مقاله ISI 7 صفحه سال انتشار : 2010 سفارش ترجمه

Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module

Keywords: CBM; carbohydrate-binding module; GH; glycoside hydrolase; CjCBM17; CBM17 from Clostridium josui Cel5A; CjCBM28; CBM28 from Clostridium josui Cel5A; CcCBM17; CBM17 from Clostridium cellulovorans EngF; BspCBM28; CBM28 from Bacillus sp. 1139 GH5 endoglucana

دانلود رایگان متن کامل مقاله ISI 7 صفحه سال انتشار : 2010 سفارش ترجمه

Crystal structure of tubulin folding cofactor A from Arabidopsis thaliana and its β-tubulin binding characterization

Keywords: TFC; tubulin folding cofactor; CoA; cofactor A; KIS; KIESEL; PIPES; piperazine-N,N′-bis (2-ethanesulfonic acid); EGTA; ethylene glycol bis (2-aminoethyl ether)-N,N,N′,N′-tetraacetic acid; RMSD; root mean square deviations; Tubulin folding cofactor A

دانلود رایگان متن کامل مقاله ISI 7 صفحه سال انتشار : 2010 سفارش ترجمه

Cyclic peptide inhibitors of HIV-1 integrase derived from the LEDGF/p75 protein

Keywords: AIDS; acquired immunodeficiency syndrome; HIV; human immunodeficiency virus; IN; integrase; LEDGF; lens epithelium-derived growth factor; IBD; integrase binding domain; BC; backbone cyclic; MOI; multiplicity of infection; BTC; bis(trichloromethyl) carbona

دانلود رایگان متن کامل مقاله ISI 8 صفحه سال انتشار : 2010 سفارش ترجمه

Development of potent anti-infective agents from Silurana tropicalis: Conformational analysis of the amphipathic, alpha-helical antimicrobial peptide XT-7 and its non-haemolytic analogue [G4K]XT-7

Keywords: CD; circular dichroism; DHPC; 1,2-dihexanoyl-sn-glycero-3-phosphocholine; MIC; minimum inhibitory concentration; NMR; nuclear magnetic resonance; NOE; nuclear Overhauser effect; NOESY; nuclear Overhauser effect spectroscopy; TFE; trifluoroethanol; TOCSY;

دانلود رایگان متن کامل مقاله ISI 9 صفحه سال انتشار : 2010 سفارش ترجمه

A new member of the ribbon-helix-helix transcription factor superfamily from the plant pathogen Xanthomonas axonopodis pv. citri

Keywords: Citrus canker; Ribbon-helix-helix fold; DNA-binding protein; Antitoxin; NMR; Xac; Xanthomonas axonopodis pv. citri; Xaa; Xanthomonas axonopodis pv. aurantifolii); RHH; ribbon-helix-helix; TA; toxin-antitoxin pair; CSI; chemical shift index; J; spectral

دانلود رایگان متن کامل مقاله ISI 11 صفحه سال انتشار : 2010 سفارش ترجمه

Synthesis and pharmacological characterization of a new series of 5,7-disubstituted-[1,2,4]triazolo[1,5-a][1,3,5]triazine derivatives as adenosine receptor antagonists: A preliminary inspection of ligand-receptor recognition process

Keywords: GPCRs; G protein-coupled receptors; AR; adenosine receptor; ADA; adenosine deaminase; cAMP; cyclic adenosine monophosphate; h; human; SAR; structure-affinity relationship; r; rat; DPCPX; 8-cyclopentyl-1,3-dipropyl-xanthine; CGS 21680; 2-[4-(2-carboxyeth

دانلود رایگان متن کامل مقاله ISI 13 صفحه سال انتشار : 2010 سفارش ترجمه

Nitration of tyrosine 74 prevents human cytochrome c to play a key role in apoptosis signaling by blocking caspase-9 activation

Keywords: Ac-LEHD-AFC; N-acetyl-Leu-Glu-His-Asp-(7-amino-4-trifluoromethyl coumarin); Apaf-1-xl; apoptosis protease-activating factor-1-x-long; BSA; bovine serum albumin; Cc; cytochrome c; CD; circular dichroism; CLSTR; CLuSTeR CDPro database; DSF; differential sca

دانلود رایگان متن کامل مقاله ISI 13 صفحه سال انتشار : 2010 سفارش ترجمه

Affinity of aporphines for the human 5-HT2A receptor: Insights from homology modeling and molecular docking studies

Keywords: Nantenine; Aporphine; Serotonin; MDMA; 5-HT2A; 5-HT; 5-hydroxytryptamine, serotonin; AcOH; acetic acid; Boc; tert-butoxycarbonyl; BLAST; Basic Local Alignment Search Tool; BRho; bovine rhodopsin; CDI; 1,1′-carbonyldiimidazole; D; aspartic acid; DCM; dic

دانلود رایگان متن کامل مقاله ISI 14 صفحه سال انتشار : 2010 سفارش ترجمه

Structure-oriented methods for protein NMR data analysis

Keywords: 2D; two-dimensional; 3D; three-dimensional; 4D; four-dimensional; ABACUS; applied BACUS; ADC; antidistance constraint; ALFA; algorithm for fast assignment; ANSRS; assignment of NOESY spectra in real space; ARIA; ambiguous restraints for iterative assignme

دانلود رایگان متن کامل مقاله ISI 18 صفحه سال انتشار : 2010 سفارش ترجمه

Biochemical and structural characterization of 5′-methylthioadenosine nucleosidases from Arabidopsis thaliana

Keywords: AdoMet; S-adenosyl-methionine; AtMTAN1; Arabidopsis thaliana MTAN1; AtMTAN2; Arabidopsis thaliana MTA/SAH nucleosidase; EcMTAN; E. coli MTA/SAH nucleosidase; MTAN; 5′-methylthioadenosine nucleosidase; MTAP; 5′-methylthioadenosine phosphorylase; MTR; 5

دانلود رایگان متن کامل مقاله ISI 6 صفحه سال انتشار : 2009 سفارش ترجمه

Structural bioinformatics analysis of free cysteines in protein environments

Keywords: Å; RMSD from the crystal structure of the complex; aa; amino acid; C; cysteine; SH; free cysteine form; SS; disulphide from; HSSP; a database of homology-derived secondary structure of proteins; PDB; Protein Data Bank; PERL; Practical Extraction and Repo

دانلود رایگان متن کامل مقاله ISI 7 صفحه سال انتشار : 2009 سفارش ترجمه

Automated NMR assignment and protein structure determination using sparse dipolar coupling constraints

Keywords: NMR; Nuclear Magnetic Resonance; ppm; parts per million; RMSD; mean square deviation; HSQC; heteronuclear single quantum coherence spectroscopy; NOE; Nuclear Overhauser Effect; RDC; residual dipolar coupling; PDB; Protein Data Bank; pol η; zinc finger do

دانلود رایگان متن کامل مقاله ISI 27 صفحه سال انتشار : 2009 سفارش ترجمه

Crystal structure of Sulfolobus acidocaldarius aspartate carbamoyltransferase in complex with its allosteric activator CTP

Keywords: rmsd; root-mean-square-deviation; EcATCT; Escherichia coli T-state ATCase; EcATCR; Escherichia coli R-state ATCase; SaATCT; Sulfolobus acidocaldarius T-state ATCase; ATCase; Sulfolobus acidocaldarius; Allosteric regulation; CTP binding; Nucleotide-perturb

دانلود رایگان متن کامل مقاله ISI 5 صفحه سال انتشار : 2008 سفارش ترجمه

A stochastic method for the reconstruction of protein structures from one-dimensional structural profiles

Keywords: CASP; Critical assessment of structure prediction; PDB; Protein Databank; PE; Principal eigenvector; RMSD; Root mean square deviation; Protein folding; Structural profile; Tube model;

دانلود رایگان متن کامل مقاله ISI 5 صفحه سال انتشار : 2008 سفارش ترجمه

Right-handed 14-Helix in β3-Peptides from L-Aspartic Acid Monomers

Keywords: CD; circular dichroism; MD; molecular dynamics; NMR; nuclear magnetic resonance spectroscopy; NOE; nuclear Overhauser effect; NOESY; two-dimensional NOE spectroscopy; ns; nanosecond; pbc; periodic boundary conditions; ps; picosecond; RMSD; root mean squar

دانلود رایگان متن کامل مقاله ISI 8 صفحه سال انتشار : 2008 سفارش ترجمه

A biochemical and genetic study of Leishmania donovani pyruvate kinase

Keywords: CHEF; Contour Clamped Hexagonal Electric Field; FIGE; Field Inversion Gel Electrophoresis; F1,6BP; fructose 1,6 biphosphate; F2,6BP; fructose 2,6 biphosphate; MD; Molecular Dynamics; MEM; Minimum Essential Medium; PYK; Pyruvate Kinase; RMSD; relative disp

دانلود رایگان متن کامل مقاله ISI 8 صفحه سال انتشار : 2008 سفارش ترجمه

Assessment and inter-comparison of five high-resolution sea surface temperature products in the shelf and coastal seas around China

Keywords: GHRSST; Different spread; RMSD; Coastal sea; Bias correction

دانلود رایگان متن کامل مقاله ISI 8 صفحه سال انتشار : 2008 سفارش ترجمه

Effect of deleterious nsSNP on the HER2 receptor based on stability and binding affinity with herceptin: A computational approach

Keywords: Breast cancer; SNP; ERBB2 gene; HER2 receptor; Herceptin; RMSD; Stability; Binding energy; Flexibility

دانلود رایگان متن کامل مقاله ISI 9 صفحه سال انتشار : 2008 سفارش ترجمه

Multiple tandem gene duplications in a neutral lipase gene cluster in Drosophila

Keywords: dN/dS; non-synonymous to synonymous nucleotide substitution; LRT; likelihood ratio test; PAML; phylogenetic analysis by maximum likelihood; RMSD; root mean square deviation, D-D-C, duplication-degeneration-complementation; Gene duplication; Adaptive r

دانلود رایگان متن کامل مقاله ISI 11 صفحه سال انتشار : 2008 سفارش ترجمه

The conserved glycine/alanine residue of the active-site loop containing the putative acetylCoA-binding motif is essential for the overall structural integrity of Mesorhizobium loti arylamine N-acetyltransferase 1

Keywords: NAT; arylamine N-acetyltransferase; RMSD; root mean square deviation; RMSF; root mean square fluctuation; MLNAT1; Mesorhizobium loti NAT1; Arylamine N-acetyltransferase; P-loop; Active-site; Steric hindrance; Site-directed mutagenesis;

دانلود رایگان متن کامل مقاله ISI 7 صفحه سال انتشار : 2007 سفارش ترجمه

Displaying 3D data on RNA secondary structures: coloRNA

Keywords: Display program; Visualization software; Three-dimensional structure; Conformational change; Tertiary fold; RMSD

دانلود رایگان متن کامل مقاله ISI 9 صفحه سال انتشار : 2007 سفارش ترجمه

A pathway for protons in nitric oxide reductase from Paracoccus denitrificans

Keywords: NOR; bacterial nitric oxide reductase; HCuO; heme-copper oxidase; CcO; cytochrome c oxidase; DDM; β-d-dodecyl maltoside; HEPES; 4-(2-Hydroxyethyl)-piperazine-1-ethanesulfonic acid; BTP; Bis-Tris Propane; HARC; hexa-amineruthenium(II)-chloride; v-NOR; NOR

دانلود رایگان متن کامل مقاله ISI 12 صفحه سال انتشار : 2007 سفارش ترجمه

Role of water molecules for binding inhibitors in the SH2 domain of Grb2: A molecular dynamics study

Keywords: Grb2 SH2; Molecular dynamics; Solvent effects; Water bridging; Ligand binding; Drug design; EGF-R; epidermal growth factor receptor; Grb2; growth factor receptor bound protein 2; IC50; concentration required for 50% inhibition; MAPK; mitogen-activated pro

دانلود رایگان متن کامل مقاله ISI 16 صفحه سال انتشار : 2007 سفارش ترجمه

High non-protective, long-lasting antibody levels in malaria are associated with haplotype shifting in MHC-peptide-TCR complex formation: a new mechanism for immune evasion

Keywords: Malaria vaccine; Immunogenic peptides; MHC II-peptide-TCR Complex; Long-lasting antibody; AMA-1; apical membrane antigen 1; APL; altered peptide ligand; CD; circular dichroism; CG; glycine-cysteine; COL II; collagen II; FCA; Freund's complete adjuvant;

دانلود رایگان متن کامل مقاله ISI 10 صفحه سال انتشار : 2006 سفارش ترجمه

Molecular characterization of a new scorpion venom lipolysis activating peptide: Evidence for disulfide bridge-mediated functional switch of peptides

Keywords: NaScTx; scorpion toxin affecting sodium channels; WDB; wrapper disulfide bridge; ORF; open reading frame; UTR; untranslational region; CSαβ; cystine-stabilized α-helix and β-sheet; NavChs; voltage-gated sodium channels; KvChs; voltage-gated potassium

دانلود رایگان متن کامل مقاله ISI 12 صفحه سال انتشار : 2006 سفارش ترجمه

The very C-terminus of protein kinase Cɛ is critical for the full catalytic competence but its hydrophobic motif is dispensable for the interaction with 3-phosphoinositide-dependent kinase-1

Keywords: aPKC; atypical PKC; cPKC; classic PKC; MD; molecular dynamics; nPKC; novel PKC; PAGE; polyacrylamide gel electrophoresis; PDK-1; 3-phosphoinositide-dependent kinase-1; PKA; cAMP-dependent protein kinase; PKB; protein kinase B; PKC; protein kinase C; RMSD;

دانلود رایگان متن کامل مقاله ISI 12 صفحه سال انتشار : 2006 سفارش ترجمه

Structure of the house dust mite allergen Der f 2: Implications for function and molecular basis of IgE cross-reactivity

Keywords: Eur m 2; Euroglyphus maynei major allergen 2; GM2-AP; GM2-activator protein; HE1; human epidymal secretory protein; IgE; immunoglobulin E; Lep d 2; major type 2 allergen Lepidoglyphus destructor; Der f 2; major type 2 allergen from Dermatophagoides farina

دانلود رایگان متن کامل مقاله ISI 5 صفحه سال انتشار : 2005 سفارش ترجمه

Isobaric vapor-liquid equilibria of the binary system maleic anhydride and di-isobutyl hexahydrophthalate at 2.67, 5.33 and 8.00 kPa

Keywords: DIBE; di-isobutyl hexahydrophthalate; MAN; maleic anhydride; RMSD; root mean squared deviations; UNIFAC; universal quasi-chemical functional-group activity coefficients; VLE; vapor-liquid equilibrium; Vapor-liquid equilibrium data; Ebulliometric metho

دانلود رایگان متن کامل مقاله ISI 5 صفحه سال انتشار : 2005 سفارش ترجمه

Ab initio fragment molecular orbital (FMO) method applied to analysis of the ligand-protein interaction in a pheromone-binding protein

Keywords: FMO; fragment molecular orbital; BmPBP; Bombyx mori pheromone-binding protein; BM; bombykol; RMSD; root-mean-square deviation; PDB; Protein Data Bank; RHF; restricted Hartree-Fock; SCF; self-consistent force field; GDDI; generalized distributed data int

دانلود رایگان متن کامل مقاله ISI 6 صفحه سال انتشار : 2005 سفارش ترجمه

Structure and laminin-binding specificity of the NtA domain expressed in eukaryotic cells

Keywords: HEK; human embryonic kidney; ABTS; 2,2′-azino-di-[3-ethylbenzthiazoline sulfonate]; RMSD; root-mean-square deviation; DMEM; Dulbecco's modified Eagles medium; Agrin; N-terminal agrin; Agrin-laminin interaction;

دانلود رایگان متن کامل مقاله ISI 7 صفحه سال انتشار : 2005 سفارش ترجمه

The nop gene from Phanerochaete chrysosporium encodes a peroxidase with novel structural features

Keywords: LiP; lignin peroxidase; MnP; manganese_dependent peroxidase; MD; molecular dynamics; RMSD; root mean square deviation; VP or VS; versatile peroxidase; CiP; peroxidase from Coprinus cinereus; ARP; peroxidase from Arthromyces ramosus; Oxidoreductase; Peroxi

دانلود رایگان متن کامل مقاله ISI 7 صفحه سال انتشار : 2005 سفارش ترجمه

Synthesis and evaluation of eight-membered cyclic pseudo-dipeptides

Keywords: Boc; tert-butyloxycarbonyl; DCM; dichloromethane; DIBAL; diisobutyl aluminium hydride; DIEA; diisopropyl ethyl amine; EtOAc; ethyl acetate; HATU; O-(7-azabenzotriazol-1-yl)-N,N,N′,N′-tetra-methyluronium hexafluorophosphate; HOBt; hydroxybenzotriazole;

دانلود رایگان متن کامل مقاله ISI 8 صفحه سال انتشار : 2005 سفارش ترجمه

AMBER force field implementation of the boronate function to simulate the inhibition of β-lactamases by alkyl and aryl boronic acids

Keywords: Amber; Boronic acid; Force field parameterization; β-Lactamases; GB/SA; generalized Born surface area; MCMM; Monte Carlo multiple minimum; MM/MD; molecular mechanics/molecular dynamics; PDB; protein data bank; RMSD; root mean square distance; TNCG; trunc

دانلود رایگان متن کامل مقاله ISI 9 صفحه سال انتشار : 2005 سفارش ترجمه

Automated NMR structure determination and disulfide bond identification of the myotoxin crotamine from Crotalus durissus terrificus

Keywords: Crotalus durissus terrificus; NMR structure; Crotamine; COSY; correlation spectroscopy; DLP; defensin-like peptide; E.COSY; exclusive COSY; NMR; nuclear magnetic resonance; NOE; nuclear Overhauser enhancement; NOESY; NOE spectroscopy; PDB; protein data ba

دانلود رایگان متن کامل مقاله ISI 9 صفحه سال انتشار : 2005 سفارش ترجمه

Structural studies on 26RFa, a novel human RFamide-related peptide with orexigenic activity

Keywords: CD; circular dichroism; COSY; correlated spectroscopy; Fmoc; fluorenylmethoxycarbonyl; HMBC; heteronuclear multiple-bond correlation; HSQC; heteronuclear single quantum coherence; MALDI/TOF-MS; matrix-assisted laser desorption ionisation time-of-flight ma

دانلود رایگان متن کامل مقاله ISI 11 صفحه سال انتشار : 2005 سفارش ترجمه

Disulfide-linked dimers of human adrenaline synthesizing enzyme PNMT are catalytically active

Keywords: AdoHcy; S-adenosyl-l-homocysteine; AdoMet; S-adenosyl-l-methionine; βME; β-mercaptoethanol; AUC; analytical ultracentrifugation; DTT; dithiothreitol; EDTA; ethylene-diamine tetraacetic acid; GSH; reduced glutathione; GSSG; oxidized glutathione; PAGE; po

دانلود رایگان متن کامل مقاله ISI 11 صفحه سال انتشار : 2005 سفارش ترجمه

Identifying Plasmodium falciparum merozoite surface protein-10 human erythrocyte specific binding regions

Keywords: P. falciparum; Merozoite Surface Protein 10; MSP-10; High Activity Binding Peptides; Invasion inhibition; MSP; merozoite surface protein; HABP; high activity binding peptide; 125I-HABP; 125-iodine radio-labelled HABP; HBS; HEPES buffered saline; CD; circu

دانلود رایگان متن کامل مقاله ISI 12 صفحه سال انتشار : 2005 سفارش ترجمه

Kinematic and dynamic processes for the control of pointing movements in humans revealed by short-term exposure to microgravity

Keywords: motor planning; velocity profile; internal models; motor adaptation; gravity force; AD; acceleration duration; C; ratio of peak to mean velocity; Dev; maximum path deviation from a straight line; DF; downward direction, fast movement; DN; downward directi

دانلود رایگان متن کامل مقاله ISI 13 صفحه سال انتشار : 2005 سفارش ترجمه

The last five amino acid residues at the C-terminus of PRK1/PKN is essential for full lipid responsiveness

Keywords: aPKC; atypical PKC; cPKC; classic PKC, MD molecular dynamics; nPKC; novel PKC; PAGE; polyacrylamide gel electrophoresis; PRK1; protein kinase C-related kinase 1; PKC; protein kinase C; PKA; cAMP-dependent protein kinase; PKB; protein kinase B; PDK-1; 3-ph

دانلود رایگان متن کامل مقاله ISI 14 صفحه سال انتشار : 2005 سفارش ترجمه

Fitting modified HRP-I peptide analogue 3D structure into HLA-DR molecules induces protection against Plasmodium falciparum malaria

Keywords: HLA; human leukocyte antigen; RBC; red blood cells; HRP; histidine-rich proteins; KAHRP; knob-associated histidine-rich protein; MAHRP; membrane-associated histidine-rich protein; FP; ferriprotoporphyrin; BLVCR; B-lymphocyte leukemia virus cell receptor;

دانلود رایگان متن کامل مقاله ISI 14 صفحه سال انتشار : 2005 سفارش ترجمه

The interactions of antimicrobial peptides derived from lysozyme with model membrane systems

Keywords: 1D; one dimensional; 2D; two dimensional; CD; circular dichroism; CFU; colony forming unit; CSI; chemical shift index; DSC; differential scanning calorimetry; nuclear magnetic resonance; DSS; sodium 3-(trimethylsilyl)-1-propanesulfonate; DPC; dodecylphosp

دانلود رایگان متن کامل مقاله ISI 15 صفحه سال انتشار : 2005 سفارش ترجمه