Functional role of putative critical residues in Mycobacterium tuberculosis RNase P protein
Keywords: Pre-tRNA maturation; tRNA; Ribonuclease; Ribozyme; RNA
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Research paperThe complete chloroplast genome of Gentiana straminea (Gentianaceae), an endemic species to the Sino-Himalayan subregion
Keywords: Cp; chloroplast; LSC; large single-copy region; SSC; small single-copy region; IR; inverted repeat; bp; base pair(s); rRNA; ribosomal RNA; tRNA; transfer RNA; IGS; intergenic spacer; CDS; coding sequence; SSR; simple sequence repeat; ML; maximum likelihoo
Research paperThe complete mitogenomes of Calameuta filiformis (Eversmann, 1847) and Calameuta idolon (Rossi, 1794) (Hymenoptera: Cephidae): The remarkable features of the elongated AÂ +Â T rich region in Cephini
Keywords: Cl. idolon; Calamauta idolon; Cl. filiformis; Calamauta filiformis; T. iudaicus; Trachelus iudaicus; C. cinctus; Cephus cinctus; bp; base pair; PCGs; protein coding genes; rRNA; ribosomal RNA; tRNA; transfer RNA; A + T-rich region; adenine + thymine-r
tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs
Keywords: tRNA; RNA modification; Bioinformatics; Sequence similarity; Homology; MODOMICS;
Loss of the Mediator subunit Med20 affects transcription of tRNA and other non-coding RNA genes in fission yeast
Keywords: Transcription; Mediator; Exosome; tRNA; RNA polymerase III
Comparison of full mitochondrial genomes for the rice weevil, Sitophilus oryzae and the maize weevil, Sitophilus zeamais (Coleoptera: Curculionidae)
Keywords: ORF; Open Reading Frame; rRNA; ribosomal ribonucleic acid; tRNA; transfer ribonucleic acid; rrnS; small rRNA; rrnL; large rRNA; COI; cytochrome oxidase c subunit 1; COII; cytochrome oxidase c subunit 2; COIII; cytochrome oxidase c subunit 3; Weevil; Contr
Mitochondrial haplogroups and expression studies of commonly used human cell lines
Keywords: Cell lines; Multiplex fragment length analysis; Mitochondrial haplogroup; Mitochondria; mtDNA; Gene expression analysis; EMB; endomyocardial biopsy; gDNA; genomic DNA; MFLA; multiplex fragment length analysis; mtDNA; mitochondrial DNA; OXPHOS; oxidative p
Development of a Bacillus subtilis cell-free transcription-translation system for prototyping regulatory elements
Keywords: ATP; adenosine triphosphate; CTP; cytidine triphosphate; GTP; guanosine triphosphate; UTP; uridine triphosphate; GFPmut3b; green fluorescent protein mut3b variant; Mg; magnesium; K; potassium; tRNA; transfer ribonucleic acid; 3-PGA; 3-phosphoglycerate; NA
High-glucose environment increased thrombospondin-1 expression in keratinocytes via DNA hypomethylation
Keywords: TSP1; thrombospondin-1; AGE; advanced glycation end-product; BSA; bovine serum albumin; 5-Aza-dC; 5-Aza-2'-deoxycytidine; MSP; methylation-specific PCR; ROS; reactive oxygen species; PBS; phosphate-buffered saline; PCR; polymerase chain reaction; Rluc; Re
Cryptic tRNAs in chaetognath mitochondrial genomes
Keywords: tRNA; Chaetognatha; Cryptic tRNA; Overlap coding; tRNA misloading
Mitogenomics of Hesperelaea, an extinct genus of Oleaceae
Keywords: bp; base pair; dN; non-synonymous substitution rate; dS; synonymous substitution rate; GC content; Guanine and Cytosine content; GTR + G; General Time Reversible + Gamma; mitogenome; mitochondrial genome; NGS; Next Generation Sequencing; plastome; pla
The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs
Keywords: HL; Hairpin Loop; IL; Internal Loop; 3WJ; 3-way Junction; 4WJ; 4-way Junction; MHJ; Multi-Helix Junction; 2D structure; Secondary structure; PDB; Protein Data Bank; NDB; Nucleic Acid Database; WC; Watson-Crick; non-WC; non-Watson-Crick; BP; basepair; NR;
Sequence and phylogenetic analysis of the complete mitochondrial genome of Lasiopodomys mandarinus mandarinus (Arvicolinae, Rodentia)
Keywords: mtDNA; mitochondrial DNA; rRNA; ribosomal RNA; tRNA; transfer RNA; DHU; dihydrouracil; ML; maximum likelihood; NJ; neighbor joining; PCGs; protein-coding genes; COX3; cytochrome oxidase subunit 3; ND; nicotinamide adenine dinucleotide dehydrogenase subuni
Long non-coding RNA: A newly deciphered “code” in prostate cancer
Keywords: Androgen receptor; LNCaP; Biomarker; PCa; prostate cancer; ncRNA; non-coding RNAs; lncRNA; long ncRNA; miRNA; microRNA; snRNA; small nuclear RNA; siRNA; small interfering RNA; tRNA; transfer RNA; rRNA; ribosomal RNA; PCA3; PCa antigen 3; PIN; prostatic in
Probing the influence of hypermodified residues within the tRNA3Lys anticodon stem loop interacting with the A-loop primer sequence from HIV-1
Keywords: RNA dynamics; HIV genome; HIV transcription; tRNA; Anti-codon loop; Molecular dynamics; Quantum mechanics; QTAIM;
Organization and comparative analysis of the mitochondrial genomes of bioluminescent Elateroidea (Coleoptera: Polyphaga)
Keywords: DNA; deoxyribonucleic acid; mt genome; mitochondrial genome; RNA; ribonucleic acid; tRNA; trnasfer RNA; rRNA; ribosomal RNA; bp; base pairs; 16S lrRNA or rrnL; large subunit rRNA gene; 12S srRNA or rrnS; small subunit rRNA gene; COX1; cytochrome oxidase s
Identification and expression analysis of cellular and viral microRNAs in CyHV3-infected KCF-1 cells
Keywords: miRNA; microRNA; CyHV-3; Cyprinivirus 3; KHV; Koi Herpesvirus; KCF-1; Koi caudal fin cells-1; Nt; nucleotides; Bp; base pair; UTR; untranslated regions; LPS; lipopolysaccharide; VZV; varicella zoster virus; UVB; ultraviolet radiation b; DMEM; Dulbecco min
Counterselection employing mutated pheS for markerless genetic deletion in Bacteroides species
Keywords: Bacteroides; pheS; tRNA; p-chloro-phenylalanine;
An efficient approach for conversion of 5-substituted 2-thiouridines built in RNA oligomers into corresponding desulfured 4-pyrimidinone products
Keywords: 2-Thiouridine; Oxidative desulfuration; Oxidative stress; tRNA; Oxone;
The complete mitochondrial genome of Strongylus equinus (Chromadorea: Strongylidae): Comparison with other closely related species and phylogenetic analyses
Keywords: Strongylus equinus; Mitochondrial genome; Comparative analyses; Phylogenetic analyses; S. vulgaris; Strongylus vulgaris; S. equinus; Strongylus equinus; mt; mitochondrial; mtDNA; mitochondrial DNA; PCR; polymerase chain reaction; BI; Bayesian inference;
Biophysical insights into the intercalative interaction of surfactant cobalt(III) complexes of certain diimine ligands bound to yeast tRNA: Effects of hydrophobicity
Keywords: Intercalation; tRNA; Surfactant cobalt(IIII) complex; Hydrophobicity; Competitive binding;
Locating the binding sites of antioxidants resveratrol, genistein and curcumin with tRNA
Keywords: res; resveratrol; gen; genistein; cur; curcumin; FTIR; Fourier transform infrared; CD; circular dichroism; Polyphenol; tRNA; Binding site; Stability; Spectroscopy; Modeling;
Analysis of the complete mitochondrial genome and characterization of diverse NUMTs of Macaca leonina
Keywords: mtDNA; mitochondrial DNA; NUMT; nuclear mitochondrial sequences; tRNA; transfer ribonucleic acid; rRNA; ribosomal ribonucleic acid; mya; million years ago; DSB; double-strand break; SAP; shrimp alkaline phosphatase; HIV-1; human immunodeficiency virus typ
Breast anticancer drug tamoxifen and its metabolites bind tRNA at multiple sites
Keywords: tamoxtamoxifen; 4-hydroxtamox4-hydroxytamoxifen; endoxendoxifen; FTIRFourier transform infrared spectroscopy; CDcircular dichroism; Tamoxifen; tRNA; Binding site; Spectroscopy; Modeling;
A mutation in MT-TW causes a tRNA processing defect and reduced mitochondrial function in a family with Leigh syndrome
Keywords: LS; Leigh Syndrome; MT-TW; mitochondrial tRNA tryptophan; OXPHOS; oxidative phosphorylation; rRNA; ribosomal ribonucleic acid; tRNA; transfer ribonucleic acid; NGS; next generation sequencing; IUGR; intrauterine growth retardation; Leigh syndrome; Multi-o
The influence of the C5 substituent on the 2-thiouridine desulfuration pathway and the conformational analysis of the resulting 4-pyrimidinone products
Keywords: 2-Thiouridine; tRNA; Desulfuration; 4-Pyrimidinone riboside; Conformational analysis; Oxidative stress;
RNA epigenetics
Keywords: lncRNA; long noncoding RNA; m1A; N1-methyl-A; m1G; N1-methyl-G; m5C; 5-methyl cytosine; m6A; N6-methyl adenosine; METTL14; Methyltransferaselike 14; mRNA; Messenger RNA; Nm; 2â²-O-methyl nucleotides; Ψ; pseudouridine; RT; reverse transcriptase; tRNA; tr
Efficacy and safety of tavaborole topical solution, 5%, a novel boron-based antifungal agent, for the treatment of toenail onychomycosis: Results from 2 randomized phase-III studies
Keywords: antifungal agents; arthrodermataceae; nails; onychomycosis; randomized controlled trial; tavaborole; AE; adverse event; FDA; Food and Drug Administration; KOH; potassium hydroxide; TEAE; treatment-emergent adverse event; TGT; target great toenail; tRNA; t
A genome survey sequencing of the Java mouse deer (Tragulus javanicus) adds new aspects to the evolution of lineage specific retrotransposons in Ruminantia (Cetartiodactyla)
Keywords: A (nucleotide); adenosine; Ala; alanine; ALPINE; alpaca SINE; BDDF; bovine dimer driven family; BLAT; blast like alignment tool; BLAST; basic local alignment search tool; BovB; bovine RTE element; BWA; Burrows-Wheeler aligner; C (nucleotide); Cytosine;
Mitochondrial tRNASer(UCN) variants in 2651 Han Chinese subjects with hearing loss
Keywords: Hearing loss; Mitochondria; tRNA; Mutation; Incidence; Spectrum
Complete mitochondrial genome of Cuora trifasciata (Chinese three-striped box turtle), and a comparative analysis with other box turtles
Keywords: AÂ +Â T; percentage of adenosine and thymidine; aa; amino acid; Ala; alanine; Arg; arginine; Asn; asparagine; Asp; aspartic acid; ATP; adenosine 5-triphosphate; bp; base pair(s); C; cytosine; COX; cytochrome c oxidase; CR; control region; CSB; conserved s
An unusual mitochondrial genome structure of the tonguefish, Cynoglossus trigrammus: Control region translocation and a long additional non-coding region inversion
Keywords: mt; mitochondrial; PCR; polymerase chain reaction; tRNA; transfer RNA; rRNA; ribosomal RNA; CR; control region; ATP6 and ATP8; ATPase subunits 6 and 8; ND1-ND6 and ND4L; NADH dehydrogenase subunits 1-6 and 4L; COX1-COX3; cytochrome c oxidase subunit
Why should cancer biologists care about tRNAs? tRNA synthesis, mRNA translation and the control of growth
Keywords: tRNA; RNA; Polymerase III; mRNA translation growth; Myc; TOR
The role of FeS clusters for molybdenum cofactor biosynthesis and molybdoenzymes in bacteria
Keywords: Molybdenum-iron-iron-sulfur cluster; Molybdenum cofactor; tRNA; Sulfur transfer; l-Cysteine desulfurase;
Regulation of hippocampal synaptic plasticity by BDNF
Keywords: 4E-BPs; eIF4E-binding proteins; 5-HT; 5-hydroxytryptamine; ADF; actin-depolymerising factor; AMPA; α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid; AMPAR; AMPA receptors; Arc; activity-regulated cytoskeleton-associated protein; BDNF; brain-derived n
The complete mitochondrial genome of Oxyuris equi: Comparison with other closely related species and phylogenetic implications
Keywords: Mitochondrial genome; Oxyuris equi; Comparative analysis; Phylogeny; O. equi; Oxyuris equi; E. vermicularis; Enterobius vermicularis; W. siamensis; Wellcomia siamensis; mt; mitochondrial; mtDNA; mitochondrial DNA; PCR; polymerase chain reaction; cox1;
Complete mitochondrial genome of Anadara vellicata (Bivalvia: Arcidae): A unique gene order and large atypical non-coding region
Keywords: Sb; Scapharca broughtonii; Sk; Scapharca kagoshimensis; Tg; Tegillarca granosa; Av; Anadara vellicata; atp6; ATPase subunit 6 genes; Cytb; cytochrome b gene; cox1-3; cytochrome c oxidase subunits I-III genes; NCR; non-coding region; nad1-6 and nad4l
The complete mitochondrial genome of Brachymystax lenok tsinlingensis (Salmoninae, Salmonidae) and its intraspecific variation
Keywords: bp; base pair; tRNA; transfer ribose nucleic acid; rRNA; ribosomal ribose nucleic acid; OL; replication origin; PCR; polymerase chain reaction; kb; kilo base pair; CR; control region; DNA; deoxy-ribose nucleic acid; BLAST; Basic Local Alignment Search Too
MYC and metabolism on the path to cancer
Keywords: 2-DG; 2-deoxyglucose; 4E-BP; eIF4E-binding protein; 5,10-methylene THF; 5,10-methylenetetrahydrofolate; ACC; acetyl-CoA carboxylase; ACLY; ATP-citrate lyase; AMPK; AMP-activated protein kinase; ATP; adenosine triphosphate; ChIP-seq; chromatin immunoprecip
Origin and evolution of the Peptidyl Transferase Center from proto-tRNAs
Keywords: Ribosome; Peptidyl Transferase Center; Origin; tRNA
Stability studies on the newly discovered cyclic form of tRNA N6-threonylcarbamoyladenosine (ct6A)
Keywords: Cyclic N6-threonylcarbamoyladenosine (ct6A); N6-threonylcarbamoyladenosine (t6A); tRNA; Modified nucleosides; Oxazolones
The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand
Keywords: tRNA; Riboswitch; Transcription attenuation; Gene regulation; RNA structure;
Relaxed tRNA specificity of the Staphylococcus aureus aspartyl-tRNA synthetase enables RNA-dependent asparagine biosynthesis
Keywords: AsnRS; asparaginyl-tRNA synthetase; AspRS; aspartyl-tRNA synthetase; ND-AspRS; non-discriminating AspRS; D-AspRS; discriminating AspRS; GlnRS; glutaminyl-tRNA synthetase; ND-GluRS; non-discriminating glutamyl-tRNA synthetase; AsnA; asparagine synthetase A
Genome-guided analysis of transformation efficiency and carbon dioxide assimilation by Moorella thermoacetica Y72
Keywords: PAM; plasmid artificial modification; PCR; polymerase chain reaction; R-M; restriction-modification; rRNA; ribosomal RNA; TCA; tricarboxylic acid; tRNA; transfer RNA; Acetogen; Genome analysis; Moorella thermoacetica Y72; Reductive acetyl-CoA pathway;
The complete mitochondrial genome sequence of the world's largest fish, the whale shark (Rhincodon typus), and its comparison with those of related shark species
Keywords: bp; base pairs; IUCN; International Union for the Conservation of Nature; rRNA; Ribosomal ribose nucleic acid; tRNA; Transfer ribose nucleic acid; Ï; nucleotide diversity; Cytb; Cytochrome oxidase b gene; COI and COII; Cytochrome oxidase gene subunits 1
Modelling of vitamin A binding to tRNA
Keywords: ret, retinol; retac, retinoic acid; FTIR, Fourier transform infrared; CD, circular dichroismRetinol; Retinoic acid; tRNA; Binding; Fluorescent
Purification of pre-miR-29 by arginine-affinity chromatography
Keywords: miRNA; microRNA; RNA; ribonucleic acid; mRNA; messenger RNA; RISC; RNA-induced silencing complex; AD; Alzheimer's disease; Aβ; β-amyloid; APP; β-amyloid precursor protein; BACE1; β-site APP-cleaving enzyme 1; SPE; silica-based solid-phase extraction;
Space ethics to test directed panspermia
Keywords: Astrobiology; Directed panspermia; Genetic code; Extraterrestrial intelligence; Space ethicsSETI, search for extraterrestrial intelligence; METI, messaging to extraterrestrial intelligence; LUCA, last universal common ancestor; RNA, ribonucleic acid; tRNA
tRNA gene copy number variation in humans
Keywords: tRNA; transfer RNA; CNV; copy number variation; tgCNV; tRNA gene copy number variation; PCR; polymerase chain reaction; T2D; type-2 diabetes; Chr; chromosome; bp; base pair(s); GWAS; genome wide association studies; Codon; Anti-codon; Translation; Next-ge
The complete chloroplast genome sequence of Taxus chinensis var. mairei (Taxaceae): loss of an inverted repeat region and comparative analysis with related species
Keywords: aa; amino acid; ATP; adenosine triphosphate; BLAT; The BLAST-Like Alignment Tool; BLAST; Basic Local Alignment Search Tool; CDS; coding sequence; cp; chloroplast; cpDNA; chloroplast DNA; CRA; comparative repeat analysis; CST; chloroplast SSR type; DNase;