C2Analyzer: Co-target–Co-function Analyzer
Keywords: هستیشناسی ژنی; MicroRNA; Post-transcriptional regulation; Gene ontology; Co-target; Co-function
مقالات ISI هستیشناسی ژنی (ترجمه نشده)
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MicroRNA mediates DNA methylation of target genes
Keywords: هستیشناسی ژنی; DNA methylation; Gene ontology; MicroRNA; RNA-directed DNA methylation;
Global impact of Salmonella type III secretion effector SteA on host cells
Keywords: هستیشناسی ژنی; T3SS; type three secretion system; SPI; Salmonella pathogenicity island; NCBI; National Center for Biotechnology Information; LB; Luria-Bertani; FDR; false discovery rate; LDH; lactate dehydrogenase; qPCR; quantitative real-time PCR; HEMA; 2-hydroxyethyl
The biguanide metformin alters phosphoproteomic profiling in mouse brain
Keywords: هستیشناسی ژنی; T2D; type 2 diabetes; PD; Parkinson's disease; AMPK; adenosine monophosphate-activated protein kinase; STRAP; software tool for researching annotations of proteins; GO; Gene Ontology; 2DE; two-dimensional gel electrophoresis; Metformin; Phosphoproteomics;
Gene duplication followed by exon structure divergence substitutes for alternative splicing in zebrafish
Keywords: هستیشناسی ژنی; GD; gene duplication; AS; alternative splicing; GO; gene ontology; syn2; synapsin 2; kitl; kit ligand; mitf; microphthalmia-associated transcription factor; pdgfa; platelet derived growth factor alpha; blast; basic local alignment search tool; blat; blast
The gene expression profile of Monochamus alternatus in response to deltamethrin exposure
Keywords: هستیشناسی ژنی; Monochamus alternatus; Deltamethrin; Differentially expressed gene; Illumina; Gene ontology; Pathway
Role of Frizzled6 in the molecular mechanism of beta-carotene action in the lung
Keywords: هستیشناسی ژنی; BC; β-carotene; BCMO1; beta-carotene 15,15â²-monooxygenase 1; Fzd6; frizzled homologue 6; Cthrc1; collagen triple helix repeat containing 1; GO; Gene Ontology; DAVID; Database for Annotation Visualization and Integrated Discovery; DO; Disease Ontology;
Structural and functional characterization of a novel molluskan ortholog of TRAF and TNF receptor-associated protein from disk abalone (Haliotis discus discus)
Keywords: هستیشناسی ژنی; TTRAP; Disk abalone; Gene ontology; Endonuclease activity; Transcriptional analysis;
MSLoc-DT: A new method for predicting the protein subcellular location of multispecies based on decision templates
Keywords: هستیشناسی ژنی; Amino acid index distribution; Decision template; Gene ontology; Multispecies; Subcellular location
Identification of laticifer-specific genes and their promoter regions from a natural rubber producing plant Hevea brasiliensis
Keywords: هستیشناسی ژنی; ABA; abscisic acid; cPT; cis-prenyltransferase; EST; expressed sequence tag; FPP; E,E-farnesyl diphosphate; GGPP; E,E,E-geranylgeranyl diphosphate; GO; gene ontology; PI; protease inhibitor-like protein; REF; Rubber Elongation Factor; RP; rubber particle;
Characterization of conserved microRNAs from five different cucurbit species using computational and experimental analysis
Keywords: هستیشناسی ژنی; miRNA; Comparative genomics; Cucurbitaceae; Gene ontology; miRNA targets; qRT-PCR;
Prediction of bacterial protein subcellular localization by incorporating various features into Chou's PseAAC and a backward feature selection approach
Keywords: هستیشناسی ژنی; Protein subcellular localization; Position-specific score matrix; Gene ontology; PROFEAT; Backward feature selection
Comparison of hematopoietic cancer stem cells with normal stem cells leads to discovery of novel differentially expressed SSRs
Keywords: هستیشناسی ژنی; ESTs, expressed sequenced tags; SSR, single sequence repeat; GO, Gene Ontology; CSCs, cancer stem cellsCancer stem cell; GAT triplet; Gene Ontology; SSR; Tandem repeat; NF-kappa
Transcriptome analysis of grain-filling caryopses reveals the potential formation mechanism of the rice sugary mutant
Keywords: هستیشناسی ژنی; RNA-Seq; RNA sequencing; FDR; false discovery rate; DAF; day after flowering; DEGs; differentially expressed genes; OsAGPS; Oryza sativa ADP-glucose pyrophosphorylase small subunit; OsAGPL; Oryza sativa ADP-glucose pyrophosphorylase large subunit; AGPase;
Transcriptome analyses to understand effects of the Fusarium deoxynivalenol and nivalenol mycotoxins on Escherichia coli
Keywords: هستیشناسی ژنی; ACN; acetonitrile; AFB1; aflatoxin B1; ATA; alimentary toxic aleukia; DEG; differentially expressed gene; DH; 2Â ppm deoxynivalenol; DL; 0.2Â ppm deoxynivalenol; DON; deoxynivalenol; E. coli; Escherichia coli; F. graminearum; Fusarium graminearum; FB1; fu
Transcriptomic profiles of Aspergillus flavus CA42, a strain that produces small sclerotia, by decanal treatment and after recovery
Keywords: هستیشناسی ژنی; Aspergillus flavus; Decanal; Conidiation; Sclerotia; Transcriptome; Gene ontology;
Molecular characterization and expression profiles of olfactory receptor genes in the parasitic wasp, Microplitis mediator (Hymenoptera: Braconidae)
Keywords: هستیشناسی ژنی; OR; olfactory receptor; GPCR; G-protein coupled receptor; ORco; co-expression olfactory receptor; TM; transmembrane protein; EST; expressed sequence tag; GO; gene ontology; GSP; gene specific primer; Microplitis mediator; Antennal cDNA library; Olfactory
The impact of automated filtering of BLAST-determined homologs in the phylogenetic detection of horizontal gene transfer from a transcriptome assembly
Keywords: هستیشناسی ژنی; HGT; horizontal gene transfer; EGT; endosymbiotic gene transfer; FC; fraction conserved; GO; gene ontology; SAR; stramenopiles, alveolates, and rhizarians; Phylogenomics; Taxon sampling; Homolog selection; Horizontal gene transfer; Gene trees; Dinoflagell
Identification of differentially expressed genes in hepatopancreas of oriental river prawn, Macrobrachium nipponense exposed to environmental hypoxia
Keywords: هستیشناسی ژنی; PCR; Polymerase chain reaction; RNA; Ribo nucleic acid; mRNA; Messenger ribo nucleic acid; cDNA; DNA complementary to RNA; EST; Expressed sequence tag; NCBI; National Center for Biotechnology Information; GO; Gene Ontology; RNA-Seq; High-throughput RNA-se
A comparative genomic analysis of the alkalitolerant soil bacterium Bacillus lehensis G1
Keywords: هستیشناسی ژنی; CDs; protein-coding sequences; SDS; sodium dodecyl sulphate; GO; Gene Ontology; ISs; insertion sequences; MQ; menaquinone; CPA; cation/proton antiporter; CDF; cation diffusion facilitator; CDs; cyclodextrins; SCL; subcellular localisation; SP; signal pept
CNBP modulates the transcription of Wnt signaling pathway components
Keywords: هستیشناسی ژنی; CNBP; cellular nucleic acid binding protein; ZNF9; zinc-finger protein 9; CNC; cranial neural crest; CNBP-CBS; CNBP DNA-consensus binding sequence; cdk14; cyclin-dependent kinase 14; tcf7l2; T-cell specific, HMG-box transcription factor 7-like 2; ptk7; pr
Gene Ontology based housekeeping gene selection for RNA-seq normalization
Keywords: هستیشناسی ژنی; Gene Ontology; RNA-seq; Housekeeping gene; Comparative genomics; Differential gene expression;
Research ArticleThe function of targeted host genes determines the oncogenicity of HBV integration in hepatocellular carcinoma
Keywords: هستیشناسی ژنی; HBV; hepatitis B virus; HCC; hepatocellular carcinoma; ITG; integration targeted gene; RTG; recurrent integration targeted host genes; NGS; next generation sequencing; EST; expressed sequence tag; TPM; transcripts per million; GO; gene ontology; TSS; tran
Functional combination strategy for prioritization of human miRNA target
Keywords: هستیشناسی ژنی; MTPA; miRNA target prediction algorithms; GO; Gene Ontology; BP; Gene Ontology-Biology Process; MF; Gene Ontology-Molecular Function; CC; Gene Ontology-Cellular Component; PPIN; Protein-Protein Interaction Network; TF; transcription factor; TSG; t
Comparative transcriptomic analysis by RNA-seq to discern differential expression of genes in liver and muscle tissues of adult Berkshire and Jeju Native Pig
Keywords: هستیشناسی ژنی; DEGs; differentially expressed genes; JNP; Jeju Native Pig; GO; gene ontology; NGS; next generation sequencing; PE; paired-ends; CASAVA-v1.7; Consensus Assessment of Sequence and Variation v 1.7; UCSC; University of California Santa Cruz; EASE; Expression
RNA sequencing reveals high resolution expression change of major plant hormone pathway genes after young seedless grape berries treated with gibberellin
Keywords: هستیشناسی ژنی; ABA; abscisic acid; BR; brassinosteroid; DAT; days after treatment; GO; gene ontology; IAA; indoleacetic acid; qRT-PCR; quantitative real-time PCR; Additional berry enlargement; Gibberellin acid treatment; Plant hormone cross talk; Plant hormone gene expr
Genomic analysis of the interactions between social environment and social communication systems in honey bees (Apis mellifera)
Keywords: هستیشناسی ژنی; Honey bee; Social behavior; Genomics; Chemical communication; Pheromone biosynthesis; MG; mandibular gland; QR; queenright; QL; queenless; QMP; queen mandibular pheromone; 9-ODA; 9-oxo-2-decenoic acid; 9-HDA; (R)-and (S)-9-hydroxy-(E)-2-decenoic acid; HOB
Screening and identification of soybean seed-specific genes by using integrated bioinformatics of digital differential display, microarray, and RNA-seq data
Keywords: هستیشناسی ژنی; qRT-PCR; quantitative reverse transcription polymerase chain reaction; DDD; digital differential display; DAF; day after flowering; GO; gene ontology; NGS; next-generation sequencing; EST; expressed sequence tag; SAGE; serial analysis of gene expression;
Proteome-wide profiling of carbonylated proteins and carbonylation sites in HeLa cells under mild oxidative stress conditions
Keywords: هستیشناسی ژنی; DCFDA; 2,7-dichlorofluorescin diacetate; DMEM; Dulbecco's modification of Eagle's medium; DNPH; 2,4-dinitrophenyl hydrazine; ESI; electrospray ionization; FBS; fetal bovine serum; GO; Gene Ontology; LDI; laser-desorption/ionization; OS; oxidative stre
Hypoxia induces a HIF-1α dependent signaling cascade to make a complex metabolic switch in SGBS-adipocytes
Keywords: هستیشناسی ژنی; Hypoxia; Adipocytes; SGBS; Gene ontology; HIF-1; Gene expression profiling;
Bioinformatic identification and experimental validation of miRNAs from foxtail millet (Setaria italica)
Keywords: هستیشناسی ژنی; 5â²-RLM-RACE; RNA-ligase-mediated rapid amplification of cDNA ends; A; adenosine; BLAST; basic local alignment search tool; DCL1; Dicer-like-1; EST; expressed sequence tag; GSS; genomic survey sequence; GO; gene ontology; MFE; minimal folding free energy
Histologic eosinophilic gastritis is a systemic disorder associated with blood and extragastric eosinophilia, TH2Â immunity, and a unique gastric transcriptome
Keywords: هستیشناسی ژنی; Eosinophilic gastritis; EG transcriptome; IL-13; eosinophils; regulatory T cells; mast cells; CCL26; CCHMC; Cincinnati Children's Hospital Medical Center; EG; Eosinophilic gastritis; EGID; Eosinophilic gastrointestinal disorder; EoE; Eosinophilic esophagi
Comparative analysis of two phenologically divergent populations of the pine processionary moth (Thaumetopoea pityocampa) by de novo transcriptome sequencing
Keywords: هستیشناسی ژنی; Pine processionary moth; Thaumetopoea pityocampa; de novo transcriptome assembly; Next Generation Sequencing; Population comparative analyses; SNP detection; Phenology; PPM; pine processionary moth; SP; summer population; WP; winter population; SNP; singl
Ki-1/57 and CGI-55 ectopic expression impact cellular pathways involved in proliferation and stress response regulation
Keywords: هستیشناسی ژنی; HABP4; hyaluronan binding protein 4; PAIRBP1; plasminogen activator inhibitor RNA-binding protein 1; HEK293; human embryonic kidney 293 cells; TF; transcriptional factor; ER; endoplasmic reticulum; SG; stress granule; PB; processing bodies; GO; gene ontol
Gene expression profile analysis of Ligon lintless-1 (Li1) mutant reveals important genes and pathways in cotton leaf and fiber development
Keywords: هستیشناسی ژنی; ACO; 1-aminocyclopropane-1-carboxylic acid oxidase; ADNI1; adenine nucleotide transporter 1; ALDH; aldehyde dehydrogenase; AP2; AP2-EREBP transcription factors; AS1; ASYMMETRIC LEAVES1; AS2; ASYMMETRIC LEAVES2; ATSS3; Arabidopsis starch synthase 3; ATBFRU
Induction of apoptosis through ER stress and TP53 in MCF-7 cells by the nanoparticle [Gd@C82(OH)22]n: A systems biology study
Keywords: هستیشناسی ژنی; ER; endoplasmic reticulum; ROS; reactive oxygen species; GO; gene ontology; qRT; quantitative real-time; TF; transcription factor; LTS; least trimmed squares; LMS; least median of squares; MLE; maximum likelihood estimator; HEK293T; human embryonic kidney
Antennal transcriptome analysis and comparison of olfactory genes in two sympatric defoliators, Dendrolimus houi and Dendrolimus kikuchii (Lepidoptera: Lasiocampidae)
Keywords: هستیشناسی ژنی; Gene ontology; Odorant receptor; Ionotropic receptor; Odorant binding protein; Chemosensory protein; Sensory neuron membrane protein
Altered epigenetic regulation of homeobox genes in human oral squamous cell carcinoma cells
Keywords: هستیشناسی ژنی; ChIP; chromatin immunoprecipitation; GAPDH; glyceraldehyde 3-phosphate dehydrogenase; GO; gene ontology; H3K27me3; histone 3 lysine 27 trimethyl; HNSCC; head and neck squamous cell carcinoma; HOX; homeobox; HPRT1; hypoxanthine phosphoribosyltransferase 1;
Phosphoproteome analysis reveals new drought response and defense mechanisms of seedling leaves in bread wheat (Triticum aestivum L.)
Keywords: هستیشناسی ژنی; ABA; abscisic acid; ABI5; abscisic acid insensitive 5; AFP; ABI5 binding protein; AQP; aquaporin; CDPK; Ca2Â +-dependent protein kinase; GO; gene ontology; KOG; eukaryotic orthologous group; LEA; late embryogenesis abundant protein; MAPK; mitogen-activate
Proteomic analysis of FUS interacting proteins provides insights into FUS function and its role in ALS
Keywords: هستیشناسی ژنی; ALS; amyotrophic lateral sclerosis; fALS; familial ALS; sALS; sporadic ALS; 293T; human embryonic kidney (HEK293T) cells; FUS/TLS; Fused in Sarcoma/Translocated in Liposarcoma; GST; glutathione S-transferase; RIPA; radioimmunoprecipitation assay buffer; S
Identification of conserved microRNAs and their targets in the model legume Lotus japonicus
Keywords: هستیشناسی ژنی; miRNA; Lotus japonicus; Gene ontology; Targets; qRT-PCR;
Identification of somatic mutations in human prostate cancer by RNA-Seq
Keywords: هستیشناسی ژنی; GWAS; genome-wide association studies; ENA; European Nucleotide Archive; SPORE; Specialized Programs of Research Excellence; SNV; single nucleotide variants; GO; gene ontology; TRAIL; TNF-related apoptosis-inducing ligand; TNF; tumor necrosis factor; RNA-
Glyphosate effects on the gene expression of the apical bud in soybean (Glycine max)
Keywords: هستیشناسی ژنی; cDNA; complementary deoxyribonucleic acid; FC; fold change; FDR; false detection rate; GO; gene ontology; KEGG; kyoto encyclopedia of genes and genomes; DGE; digital gene expression tag profiling; 26 DGEs; 26 differentially expressed cross talk genes at t
Analysis of the inheritance pattern of a Chinese family with phaeochromocytomas through whole exome sequencing
Keywords: هستیشناسی ژنی; CT; Computed Tomography; CTA; Computed Tomography Angiography; FDR; False Discovery Rate; GO; Gene Ontology; Indel; Insertion-Deletion; LOD; Logarithm of Odds; MEN2; Multiple Endocrine Neoplasia Type 2; MN; Metanephrine; NF1; Neurofibromatosis Type 1; N
A Genome-Wide Methylation Study of Severe Vitamin D Deficiency in African American Adolescents
Keywords: هستیشناسی ژنی; 25(OH)D; 25-Hydroxyvitamin D; FDR; False discovery rate; GO; Gene ontology; GWAS; Genome-Wide Association Studies; IL; Interleukin; LC-MS/MS; Liquid chromatography tandem mass spectroscopy; NHANES; National Health and Nutrition Examination Survey;
Abundant sequence divergence in the native Japanese cattle Mishima-Ushi (Bos taurus) detected using whole-genome sequencing
Keywords: هستیشناسی ژنی; mtDNA; mitochondrial DNA; BACs; bacterial artificial chromosomes; SNPs; single-nucleotide polymorphisms; indels; insertions and deletions; UTRs; untranslated regions; PCR; polymerase chain reaction; nsSNPs; non-synonymous SNPs; GO; gene ontology; QTL; qua
Lessons from the gene expression pattern of the rat zona glomerulosa
Keywords: هستیشناسی ژنی; zG; zona glomerulosa; zF; zona fasciculata; zR; zona reticularis; Cyp11b1; steroid 11β-hydroxylase; Cyp11b2; aldosterone synthase; TGF-β; transforming growth factor β; Gpc3; glypican 3; Kcnn2; potassium intermediate/small conductance calcium-activated
Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships
Keywords: هستیشناسی ژنی; Gene ontology; Association rule mining; Data mining; Interestingness measures; Gene ontology relationships; Interpro relationships;
Transcriptome-driven synthetic re-modeling of Escherichia coli to enhance cellobiose utilization
Keywords: هستیشناسی ژنی; OSS; original synthetic strain; ESS; evolved synthetic strain; CMP; central metabolic pathway; GO; gene ontology; SLIC; sequence and ligation independent cloning; CCR; carbon catabolite repression; OD; optical density; asc operon; Cellobiose metabolism; c
Analysis of the Dendrobium officinale transcriptome reveals putative alkaloid biosynthetic genes and genetic markers
Keywords: هستیشناسی ژنی; BLAST; Basic Local Alignment Search Tool; CYP450; cytochrome P450-dependent monooxygenase; EC; enzyme commission; ESTs; expressed sequence tags; G10H; geraniol 10-hydroxylase; GO; Gene Ontology; HQ; high-quality; KEGG; Kyoto Encyclopedia of Genes and Geno